Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008558

Physical Location & Seq

Genomic Coordinates Reverse (-)

15640684 .. 15657263

Gene Structure 16580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007311

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3159 bp

ATGGTTTATATTGGGTATAACATTTGGAAGAACATTAAAAGCTTTTCAAAGAAATACGATTTGAATTACTTTGATAAGGTTGATTGTAGATTTACTATACCAGACAATAAACTAGTGGACGTAATCCGAATTGGTAAACCATGTGAATTAACTAATAAGCAAAAACCAAAACGAAACGTTTCGGGACACCCGCCTAAAACGAAACGAAACGAAAAATGCTTCAGAGGGAGAAAGGTAGCAACATCTGAATATTCTAAGGTGCGGGAACAGTTCTATGGAACGTATGGGAAACATTGCCAGAATGCAGATAAATCGTGTTTTGGTCCAGACTCAGACTTTCTCCGCCAATTGCTTTTTTTCTTCGATGCTCGAAGTGTTGGCGACTTTTCCATTCTTGTGGAAACATGCCGGTTACTTCAGCAATTTGTCAGAGATACAGGGGATATGGTGAGCCTCTTTGCAGGCATGGATTATTCATCAAAGCATGCTTTGGTTAATTACAGAGTGAAGAAACTTGCATATCTGTGTATCAAGGCTGTTCATCAAAATAGAAATCAATTGAAGGATCAACTTTTCGCATCTCCCCAGGAGTGCACTGTGTCGATAACTTTATTGTTGGAAACAGTATTGTTGTTGATTGATCATAAGCTTCCATGGGTTTGTAAGACAGTTAGCTATCTTCTGGAAAGAAAAGCATTTACCCTGTTTAGAGAGATTATTTTAACAGGAAGGGCTAGTATAGAGACTCATAATTCCATTAACAGAGTTTCTTCATTGGAGCGCACTCTTGCTGTTGTAATTCCTCACATTGGTCAGGAGCCATGTAACTGCCCAAACATTGGTCCACACTGGAGTTTTTCGTCTCAGATTCTTACAATTCCTTTCTTGTGGAAGCTACTACCATACTTAAGAGGGGTTTTTGCAGCGCGTGGGCTGAGCCAACATTACATTCATCAGATGGCACTCTGTGTGCATAATCATGCTGATGTGCTTCCCAATGATACATCAGTTGAGTTACCCAGTTATGCCTGCCTTCTGGGAAATATACTAGAATCTTCTGGAGTTGCTCTGTCTCAGCCTGACTGCTCATTTGAAATGGCTGTAGACCTTGCTGCTGTTGCAACATTCTTGTTGGAATCCCTTCCTTCAATAAAATCGTCAAATAGACAAAGCAAGGAAGATTCCATGGTGGGTGAAGATGATACTGAGGGAGATGATGCAATGGAAATATGTTTGAATAATGATTTGGAGCGGCAGATTTGTGAGGCCATAGATTCACGCTTTCTTCTGCAATTTACAAATGTTTTGTTTGGAGGGATTTCACTTGTCAGTGATTCACATAAAGCACCGGATGATAAAGAGGTGTCAGCTGTTGGCGCAGCGTGTGCTTTTCTACATGTCACTTTCAACACCTTACCTCTTGAGAGAATCATGACTATCCTAGCTTATAGAACCGAACTTGTCCCTGTTCTATGGAACTTTATGAAACGGTGCAATGAGAACCAGAAATGGTCTTCATTGTCTGAGCAATTGGCATATCTACTGTCAGGAGATGCACCTGGTTGGCTATTACCTTTGGCAGTTTTCTGTCCCGTGTACAAGCACATGCTTACAATAGTTGATAATGAGGAGTTCTATGAACAGGAGAAGCCACTATCGTTGAAGGATATCAGATCCCTAATTATCATACTCAGACAGGCTCTATGGCAGCTTCTCTGGGTGAATCCTACGGCTCCCAGTAACTCTTCGAAATCTGTCACCAGCACCCCTGCAAAGAAGAAGCACCCTGTGGAGTTCATTCAACAGAGGGTTGGGATTGTAGCATCTGAACTCCTCTCCCAGTTGCAAGATTGGAACAATAGACGAGAGTTTACTTCCCCCAGTGACTTCCATGCTGATGGTGTCAATGATTTTTTCATTTCGCAGGCTGTGATAGAAAATACCCGAGCCAATGACATTTTGAAGCAAGCTCCGTTCCTTGTACCGTTTACGAGCAGAGTTAAAATATTCACTTCACAATTGGCAGCAGCTAGACAAAGACATGAGTCTAATTCTGTGTTTACCAGAAACCGGTTCAGAATACGGCGGGATCGTATCTTGGAAGATGCCTATAATCAGATGAGTGCATTGTCTGAAGAAGATCTTCGAGGACCGATTCGGGTAACATTTGTAAATGAATTTGGGGTTGAAGAAGCTGGAATTGATGGTGGTGGGATTTTTAAAGATTTCATGGAGAACATTACTCGAGCAGCCTTTGATGTCCAGTATGGTTTATTTAAGGAAACATCCGACCATCTCCTCTACCCTAATCCTGGTTCAGGAATGATTCATGATCAGCATCTCCAATTTTTCCATTTTCTGGGAATTCTTCTTGCAAAGGCTTTGTTTGAGGGAATTCTTGTTGATATTCCATTTGCAACATTCTTCCTGAGCAAATTAAAGCAGAAGTACAACTACTTGAATGATTTACCTTCATTAGACCAAGAATTGTATCGCCACCTTATTTTCTTGAAGCATTTCAAAGGTGATATTTCAGAACTAGAACTATATTTTGTGATCGTAAATAATGAGTATGGGGAGCAAACGGAGGAAGAGCTGCTTCCAGGCGGGAAAAACCTACGTGTCACTAATGACAACGTCATTACTTTTATTCATCTCGTTGCCAATCACCGTTTAAATTATCAGATACGTCAACAAAGTTCTCATTTTTTAAGGGGGTTTCAGCAGCTTATACAGAAAGATTGGATTGATATGTTTAATGAGCATGAACTTCAGCTTCTGATATCAGGCTCACTTGACAGCCTGGATATTGATGATCTGCGGAGAAACACTAACTATGTTGGTGGCTATCACAGTGAGCATTATGTTGTTGACATGTTCTGGGAAGTTCTCAAAAGCTTTTCATTGGAAAATCAGAAGAAATTTTTGAAATTTGTGACGGGGTGCTCTCGAGGACCATTGCTTGGGTTCAAGTACCTTGAACCATTGTTTTGCATCCAGAGAGCTGCTGGTAGTGCAACTGATGAAGCTCTTGACCGATTGCCAACTGCGGCTACATGTATGAATCTGCTGAAGCTTCCACCATATCGGAGCAAAGAGCAATTAGAAACGAAGTTGATGTATGCAATAAGTGCAGAAGCTGGTTTTGATTTGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

1053

Amino Acids

120.18

Weight (kDa)

6.4

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HECT	PF00632	747 - 1052	3.4e-93	HECT-domain (ubiquitin-transferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17205 AT3G17205 AT3G17205
fragaria_vesca	FvH4_4g20760 FvH4_4g20760 FvH4_4g20760 FvH4_4g20760
malus_domestica	MD13G1148100.v1.1 MD16G1148200.v1.1
prunus_persica	Prupe.1G111600_v2.0.a1 Prupe.1G111600_v2.0.a1
pyrus_communis	pycom13g12750 pycom16g12650
rosa_chinensis	RchiOBHm_Chr4g0426201
rosa_laevigata	RLG00000007311
rosa_multiflora	Rmu_sc0000730.1_g000025
rosa_roxburghii	Rroxscaffold_5G00368220
rosa_rugosa	Rorug04G0209500
rosa_samantha	Rh4AG266300 Rh4BG272400 Rh4CG285600 Rh4DG268700
rosa_wichuraiana	Rw4G023030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	839, 2359, 2963
AccBSI	CCGCTC	1 cut(s)	1252
AccI	GTMKAC	1 cut(s)	1104
AccII	CGCG	1 cut(s)	928
AciI	CCGC	8 cut(s)	191, 262, 343, 1252, 2086, 2607, 2821, 3050
AclI	AACGTT	1 cut(s)	177
AclWI	GGATC	3 cut(s)	573, 1668, 2097
AcsI	RAATTY	5 cut(s)	2177, 2364, 2394, 2921, 2930
AcuI	CTGAAG	5 cut(s)	205, 401, 2154, 2756, 3092
AdeI	CACNNNGTG	2 cut(s)	968, 1789
AfaI	GTAC	4 cut(s)	1598, 1983, 2450, 2975
AfiI	CCNNNNNNNGG	7 cut(s)	809, 839, 2070, 2312, 2318, 2359, 2963
AflII	CTTAAG	1 cut(s)	907
AflIII	ACRYGT	4 cut(s)	1396, 2620, 2874, 3056
AgeI	ACCGGT	1 cut(s)	2070
AhlI	ACTAGT	1 cut(s)	112
AjnI	CCWGG	5 cut(s)	585, 1558, 2311, 2602, 2802
AjuI	GAANNNNNNNTTGG	4 cut(s)	933, 965, 1229, 1261
Alw21I	GWGCWC	2 cut(s)	596, 2948
Alw26I	GTCTC	3 cut(s)	737, 867, 1077
Alw44I	GTGCAC	1 cut(s)	592
AlwI	GGATC	3 cut(s)	573, 1668, 2097
AlwNI	CAGNNNCTG	2 cut(s)	2779, 3140
Ama87I	CYCGRG	3 cut(s)	1944, 2244, 2949
AoxI	GGCC	1 cut(s)	1266
ApaLI	GTGCAC	1 cut(s)	592
ApoI	RAATTY	5 cut(s)	2177, 2364, 2394, 2921, 2930
ArsI	GACNNNNNNTTYG	2 cut(s)	1073, 1105
AsiGI	ACCGGT	1 cut(s)	2070
Asp700I	GAANNNNTTC	4 cut(s)	178, 1140, 2142, 2516
AspLEI	GCGC	3 cut(s)	783, 928, 1379
AspS9I	GGNCC	4 cut(s)	323, 842, 2150, 2954
AsuHPI	GGTGA	6 cut(s)	460, 1205, 1732, 1750, 2537, 2660
AsuII	TTCGAA	1 cut(s)	1748
AvaI	CYCGRG	3 cut(s)	1944, 2244, 2949
AvaII	GGWCC	4 cut(s)	323, 842, 2150, 2954
BaeGI	GKGCMC	1 cut(s)	596
BaeI	ACNNNNGTAYC	2 cut(s)	993, 1026
BarI	GAAGNNNNNNTAC	2 cut(s)	2438, 2470
BbsI	GAAGAC	1 cut(s)	1506
Bbv12I	GWGCWC	2 cut(s)	596, 2948
BccI	CCATC	4 cut(s)	952, 1892, 2198, 2301
BceAI	ACGGC	2 cut(s)	1746, 2099
BcgI	CGANNNNNNTGC	2 cut(s)	294, 328
BciT130I	CCWGG	5 cut(s)	587, 1560, 2313, 2604, 2804
BclI	TGATCA	2 cut(s)	640, 2332
BcoDI	GTCTC	3 cut(s)	737, 867, 1077
BcuI	ACTAGT	1 cut(s)	112
BfaI	CTAG	6 cut(s)	113, 735, 1049, 1442, 2031, 2540
BfmI	CTRYAG	1 cut(s)	1101
BfrI	CTTAAG	1 cut(s)	907
BglII	AGATCT	1 cut(s)	2140
BlpI	GCTNAGC	1 cut(s)	935
Bme1390I	CCNGG	5 cut(s)	587, 1560, 2313, 2604, 2804
Bme18I	GGWCC	4 cut(s)	323, 842, 2150, 2954
BmeT110I	CYCGRG	3 cut(s)	1944, 2244, 2949
BmgT120I	GGNCC	4 cut(s)	323, 842, 2150, 2954
BmiI	GGNNCC	2 cut(s)	819, 1734
BmrFI	CCNGG	5 cut(s)	587, 1560, 2313, 2604, 2804
BmrI	ACTGGG	4 cut(s)	1014, 1731, 1834, 1875
BmsI	GCATC	8 cut(s)	355, 587, 1207, 1543, 1832, 2095, 2347, 3003
BmuI	ACTGGG	4 cut(s)	1014, 1731, 1834, 1875
BoxI	GACNNNNGTC	1 cut(s)	2044
BpiI	GAAGAC	1 cut(s)	1506
BpmI	CTGGAG	2 cut(s)	871, 1080
Bpu10I	CCTNAGC	1 cut(s)	2429
Bpu1102I	GCTNAGC	1 cut(s)	935
Bpu14I	TTCGAA	1 cut(s)	1748
BpuEI	CTTGAG	1 cut(s)	1442
BsaAI	YACGTR	1 cut(s)	2621
BsaBI	GATNNNNATC	1 cut(s)	2337
BsaJI	CCNNGG	3 cut(s)	585, 653, 1185
BsaWI	WCCGGW	2 cut(s)	1348, 2070
Bsc4I	CCNNNNNNNGG	7 cut(s)	809, 839, 2070, 2312, 2318, 2359, 2963
Bse118I	RCCGGY	2 cut(s)	408, 2070
Bse1I	ACTGG	6 cut(s)	854, 1020, 1737, 1840, 1881, 2263
Bse3DI	GCAATG	4 cut(s)	292, 1227, 1501, 2957
Bse8I	GATNNNNATC	1 cut(s)	2337
BseBI	CCWGG	5 cut(s)	587, 1560, 2313, 2604, 2804
BseDI	CCNNGG	3 cut(s)	585, 653, 1185
BseGI	GGATG	3 cut(s)	1357, 2285, 2994
BseJI	GATNNNNATC	1 cut(s)	2337
BseLI	CCNNNNNNNGG	7 cut(s)	809, 839, 2070, 2312, 2318, 2359, 2963
BseMI	GCAATG	4 cut(s)	292, 1227, 1501, 2957
BseMII	CTCAG	8 cut(s)	345, 878, 926, 1088, 1197, 1515, 1705, 2420
BseNI	ACTGG	6 cut(s)	854, 1020, 1737, 1840, 1881, 2263
BseRI	GAGGAG	3 cut(s)	1643, 1823, 2288
BseSI	GKGCMC	1 cut(s)	596
BsgI	GTGCAG	1 cut(s)	3153
Bsh1236I	CGCG	1 cut(s)	928
BshFI	GGCC	1 cut(s)	1268
BshTI	ACCGGT	1 cut(s)	2070
BsiHKAI	GWGCWC	2 cut(s)	596, 2948
BsiHKCI	CYCGRG	3 cut(s)	1944, 2244, 2949
BsiSI	CCGG	3 cut(s)	409, 1349, 2071
BslFI	GGGAC	3 cut(s)	198, 1448, 1575
BslI	CCNNNNNNNGG	7 cut(s)	809, 839, 2070, 2312, 2318, 2359, 2963
BsmAI	GTCTC	3 cut(s)	737, 867, 1077
BsmBI	CGTCTC	1 cut(s)	867
BsmFI	GGGAC	3 cut(s)	198, 1448, 1575
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	1268
BsoBI	CYCGRG	3 cut(s)	1944, 2244, 2949
Bsp119I	TTCGAA	1 cut(s)	1748
Bsp1286I	GDGCHC	2 cut(s)	596, 2948
Bsp1407I	TGTACA	1 cut(s)	1596
Bsp143I	GATC	8 cut(s)	565, 640, 1673, 2089, 2140, 2332, 2556, 2815
Bsp1720I	GCTNAGC	1 cut(s)	935
Bsp19I	CCATGG	2 cut(s)	653, 1185
BspACI	CCGC	8 cut(s)	191, 262, 343, 1252, 2086, 2607, 2821, 3050
BspANI	GGCC	1 cut(s)	1268
BspCNI	CTCAG	8 cut(s)	344, 877, 927, 1087, 1198, 1516, 1704, 2421
BspFNI	CGCG	1 cut(s)	928
BspHI	TCATGA	2 cut(s)	1431, 2329
BspLI	GGNNCC	2 cut(s)	819, 1734
BspPI	GGATC	3 cut(s)	573, 1668, 2097
BspQI	GCTCTTC	1 cut(s)	2586
BspT104I	TTCGAA	1 cut(s)	1748
BspTI	CTTAAG	1 cut(s)	907
BsrBI	CCGCTC	1 cut(s)	1252
BsrDI	GCAATG	4 cut(s)	292, 1227, 1501, 2957
BsrFI	RCCGGY	2 cut(s)	408, 2070
BsrGI	TGTACA	1 cut(s)	1596
BsrI	ACTGG	6 cut(s)	854, 1020, 1737, 1840, 1881, 2263
BssAI	RCCGGY	2 cut(s)	408, 2070
BssECI	CCNNGG	3 cut(s)	585, 653, 1185
BssMI	GATC	8 cut(s)	565, 640, 1673, 2089, 2140, 2332, 2556, 2815
BssT1I	CCWWGG	2 cut(s)	653, 1185
Bst2UI	CCWGG	5 cut(s)	587, 1560, 2313, 2604, 2804
Bst4CI	ACNGT	9 cut(s)	270, 598, 625, 670, 1491, 1545, 1986, 2672, 2855
Bst6I	CTCTTC	2 cut(s)	1750, 2586
BstAFI	CTTAAG	1 cut(s)	907
BstAPI	GCANNNNNTGC	2 cut(s)	1385, 3131
BstAUI	TGTACA	1 cut(s)	1596
BstBAI	YACGTR	1 cut(s)	2621
BstBI	TTCGAA	1 cut(s)	1748
BstC8I	GCNNGC	5 cut(s)	463, 486, 1030, 1926, 1968
BstDEI	CTNAG	9 cut(s)	255, 331, 864, 935, 1074, 1206, 1524, 1691, 2429
BstDSI	CCRYGG	2 cut(s)	653, 1185
BstENI	CCTNNNNNAGG	1 cut(s)	2316
BstF5I	GGATG	3 cut(s)	1357, 2285, 2994
BstFNI	CGCG	1 cut(s)	928
BstHHI	GCGC	3 cut(s)	783, 928, 1379
BstKTI	GATC	8 cut(s)	568, 643, 1676, 2092, 2143, 2335, 2559, 2818
BstMAI	GTCTC	3 cut(s)	737, 867, 1077
BstMBI	GATC	8 cut(s)	565, 640, 1673, 2089, 2140, 2332, 2556, 2815
BstMWI	GCNNNNNNNGC	5 cut(s)	1118, 1376, 1385, 3014, 3131
BstNI	CCWGG	5 cut(s)	587, 1560, 2313, 2604, 2804
BstNSI	RCATGY	6 cut(s)	408, 488, 1400, 1609, 2878, 3060
BstPAI	GACNNNNGTC	1 cut(s)	2044
BstSCI	CCNGG	5 cut(s)	585, 1558, 2311, 2602, 2802
BstSFI	CTRYAG	1 cut(s)	1101
BstSLI	GKGCMC	1 cut(s)	596
BstUI	CGCG	1 cut(s)	928
BstV2I	GAAGAC	1 cut(s)	1506
BstX2I	RGATCY	2 cut(s)	1673, 2140
BstXI	CCANNNNNNTGG	2 cut(s)	397, 1898
BstYI	RGATCY	2 cut(s)	1673, 2140
BsuRI	GGCC	1 cut(s)	1268
BtgI	CCRYGG	2 cut(s)	653, 1185
BtsCI	GGATG	3 cut(s)	1357, 2285, 2994
BtsIMutI	CAGTG	5 cut(s)	594, 847, 1336, 1888, 2860
Cac8I	GCNNGC	5 cut(s)	463, 486, 1030, 1926, 1968
CaiI	CAGNNNCTG	2 cut(s)	2779, 3140
CciI	TCATGA	2 cut(s)	1431, 2329
CfoI	GCGC	3 cut(s)	783, 928, 1379
Cfr10I	RCCGGY	2 cut(s)	408, 2070
Cfr13I	GGNCC	4 cut(s)	323, 842, 2150, 2954
CsiI	ACCWGGT	1 cut(s)	1558
Csp6I	GTAC	4 cut(s)	1597, 1982, 2449, 2974
CspAI	ACCGGT	1 cut(s)	2070
CspCI	CAANNNNNGTGG	2 cut(s)	1641, 1676
CviQI	GTAC	4 cut(s)	1597, 1982, 2449, 2974
DdeI	CTNAG	9 cut(s)	255, 331, 864, 935, 1074, 1206, 1524, 1691, 2429
DpnI	GATC	8 cut(s)	567, 642, 1675, 2091, 2142, 2334, 2558, 2817
DpnII	GATC	8 cut(s)	565, 640, 1673, 2089, 2140, 2332, 2556, 2815
DraI	TTTAAA	2 cut(s)	2221, 2676
DraIII	CACNNNGTG	2 cut(s)	968, 1789
Eam1104I	CTCTTC	2 cut(s)	1750, 2586
EarI	CTCTTC	2 cut(s)	1750, 2586
EciI	GGCGGA	1 cut(s)	332
Eco130I	CCWWGG	2 cut(s)	653, 1185
Eco32I	GATATC	2 cut(s)	1669, 2784
Eco47I	GGWCC	4 cut(s)	323, 842, 2150, 2954
Eco57I	CTGAAG	5 cut(s)	205, 401, 2154, 2756, 3092
Eco88I	CYCGRG	3 cut(s)	1944, 2244, 2949
EcoNI	CCTNNNNNAGG	1 cut(s)	2316
EcoRI	GAATTC	2 cut(s)	2364, 2394
EcoRII	CCWGG	5 cut(s)	585, 1558, 2311, 2602, 2802
EcoRV	GATATC	2 cut(s)	1669, 2784
EcoT14I	CCWWGG	2 cut(s)	653, 1185
ErhI	CCWWGG	2 cut(s)	653, 1185
Esp3I	CGTCTC	1 cut(s)	867
FalI	AAGNNNNNCTT	4 cut(s)	2127, 2159, 2583, 2615
FaqI	GGGAC	3 cut(s)	198, 1448, 1575
FauI	CCCGC	4 cut(s)	198, 255, 2079, 2600
FbaI	TGATCA	2 cut(s)	640, 2332
FblI	GTMKAC	1 cut(s)	1104
FokI	GGATG	3 cut(s)	1364, 2272, 2981
FspBI	CTAG	6 cut(s)	113, 735, 1049, 1442, 2031, 2540
GlaI	GCGC	3 cut(s)	782, 927, 1378
GsuI	CTGGAG	2 cut(s)	871, 1080
HaeIII	GGCC	1 cut(s)	1268
HapII	CCGG	3 cut(s)	409, 1349, 2071
HhaI	GCGC	3 cut(s)	783, 928, 1379
Hin6I	GCGC	3 cut(s)	781, 926, 1377
HinP1I	GCGC	3 cut(s)	781, 926, 1377
HincII	GTYRAC	2 cut(s)	2693, 2872
HindII	GTYRAC	2 cut(s)	2693, 2872
HindIII	AAGCTT	4 cut(s)	40, 647, 2896, 3074
HpaII	CCGG	3 cut(s)	409, 1349, 2071
HphI	GGTGA	6 cut(s)	460, 1205, 1732, 1750, 2537, 2660
HpyAV	CCTTC	7 cut(s)	556, 723, 1043, 1151, 1155, 1657, 2481
HpyCH4III	ACNGT	9 cut(s)	270, 598, 625, 670, 1491, 1545, 1986, 2672, 2855
HpyCH4IV	ACGT	6 cut(s)	120, 177, 281, 2620, 2637, 2689
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1118, 1376, 1385, 3014, 3131
HpyF3I	CTNAG	9 cut(s)	255, 331, 864, 935, 1074, 1206, 1524, 1691, 2429
HpySE526I	ACGT	6 cut(s)	120, 177, 281, 2620, 2637, 2689
HspAI	GCGC	3 cut(s)	781, 926, 1377
Ksp22I	TGATCA	2 cut(s)	640, 2332
Kzo9I	GATC	8 cut(s)	565, 640, 1673, 2089, 2140, 2332, 2556, 2815
LguI	GCTCTTC	1 cut(s)	2586
LmnI	GCTCC	7 cut(s)	778, 817, 1249, 1738, 1975, 2578, 3090
LweI	GCATC	8 cut(s)	355, 587, 1207, 1543, 1832, 2095, 2347, 3003
MabI	ACCWGGT	1 cut(s)	1558
MaeI	CTAG	6 cut(s)	113, 735, 1049, 1442, 2031, 2540
MaeII	ACGT	6 cut(s)	120, 177, 281, 2620, 2637, 2689
MalI	GATC	8 cut(s)	567, 642, 1675, 2091, 2142, 2334, 2558, 2817
MbiI	CCGCTC	1 cut(s)	1252
MboI	GATC	8 cut(s)	565, 640, 1673, 2089, 2140, 2332, 2556, 2815
MfeI	CAATTG	4 cut(s)	347, 557, 1529, 2018
MflI	RGATCY	2 cut(s)	1673, 2140
MhlI	GDGCHC	2 cut(s)	596, 2948
MlyI	GAGTC	3 cut(s)	323, 739, 2054
MmeI	TCCRAC	3 cut(s)	597, 1113, 2313
MroXI	GAANNNNTTC	4 cut(s)	178, 1140, 2142, 2516
MslI	CAYNNNNRTG	5 cut(s)	395, 523, 978, 984, 1896
MspA1I	CMGCKG	1 cut(s)	1370
MspCI	CTTAAG	1 cut(s)	907
MspI	CCGG	3 cut(s)	409, 1349, 2071
MspR9I	CCNGG	5 cut(s)	587, 1560, 2313, 2604, 2804
MunI	CAATTG	4 cut(s)	347, 557, 1529, 2018
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	5 cut(s)	587, 1560, 2313, 2604, 2804
MvnI	CGCG	1 cut(s)	928
MwoI	GCNNNNNNNGC	5 cut(s)	1118, 1376, 1385, 3014, 3131
NcoI	CCATGG	2 cut(s)	653, 1185
NdeII	GATC	8 cut(s)	565, 640, 1673, 2089, 2140, 2332, 2556, 2815
NlaIV	GGNNCC	2 cut(s)	819, 1734
NmuCI	GTSAC	5 cut(s)	1399, 1756, 1883, 2623, 2935
NspI	RCATGY	6 cut(s)	408, 488, 1400, 1609, 2878, 3060
NspV	TTCGAA	1 cut(s)	1748
PaeI	GCATGC	1 cut(s)	488
PaeR7I	CTCGAG	2 cut(s)	2244, 2949
PagI	TCATGA	2 cut(s)	1431, 2329
PciI	ACATGT	3 cut(s)	1396, 2874, 3056
PciSI	GCTCTTC	1 cut(s)	2586
PcsI	WCGNNNNNNNCGW	1 cut(s)	2089
PctI	GAATGC	1 cut(s)	307
PdmI	GAANNNNTTC	4 cut(s)	178, 1140, 2142, 2516
PflFI	GACNNNGTC	1 cut(s)	2636
PflMI	CCANNNNNTGG	3 cut(s)	839, 2359, 2963
PinAI	ACCGGT	1 cut(s)	2070
PleI	GAGTC	3 cut(s)	323, 739, 2053
PpsI	GAGTC	3 cut(s)	323, 739, 2053
Ppu21I	YACGTR	1 cut(s)	2621
PscI	ACATGT	3 cut(s)	1396, 2874, 3056
PshAI	GACNNNNGTC	1 cut(s)	2044
Psp1406I	AACGTT	1 cut(s)	177
Psp6I	CCWGG	5 cut(s)	585, 1558, 2311, 2602, 2802
PspGI	CCWGG	5 cut(s)	585, 1558, 2311, 2602, 2802
PspN4I	GGNNCC	2 cut(s)	819, 1734
PspPI	GGNCC	4 cut(s)	323, 842, 2150, 2954
PspXI	VCTCGAGB	1 cut(s)	2244
PstNI	CAGNNNCTG	2 cut(s)	2779, 3140
PsuI	RGATCY	2 cut(s)	1673, 2140
PsyI	GACNNNGTC	1 cut(s)	2636
PvuII	CAGCTG	1 cut(s)	1370
RsaI	GTAC	4 cut(s)	1598, 1983, 2450, 2975
RsaNI	GTAC	4 cut(s)	1597, 1982, 2449, 2974
RseI	CAYNNNNRTG	5 cut(s)	395, 523, 978, 984, 1896
SapI	GCTCTTC	1 cut(s)	2586
Sau3AI	GATC	8 cut(s)	565, 640, 1673, 2089, 2140, 2332, 2556, 2815
Sau96I	GGNCC	4 cut(s)	323, 842, 2150, 2954
SchI	GAGTC	3 cut(s)	323, 739, 2054
ScrFI	CCNGG	5 cut(s)	587, 1560, 2313, 2604, 2804
SduI	GDGCHC	2 cut(s)	596, 2948
SexAI	ACCWGGT	1 cut(s)	1558
SfaNI	GCATC	8 cut(s)	355, 587, 1207, 1543, 1832, 2095, 2347, 3003
SfcI	CTRYAG	1 cut(s)	1101
Sfr274I	CTCGAG	2 cut(s)	2244, 2949
SfuI	TTCGAA	1 cut(s)	1748
SinI	GGWCC	4 cut(s)	323, 842, 2150, 2954
SlaI	CTCGAG	2 cut(s)	2244, 2949
SmiMI	CAYNNNNRTG	5 cut(s)	395, 523, 978, 984, 1896
SmlI	CTYRAG	4 cut(s)	907, 1421, 2244, 2949
SmoI	CTYRAG	4 cut(s)	907, 1421, 2244, 2949
SpeI	ACTAGT	1 cut(s)	112
SphI	GCATGC	1 cut(s)	488
SsiI	CCGC	8 cut(s)	191, 262, 343, 1252, 2086, 2607, 2821, 3050
SspI	AATATT	2 cut(s)	251, 2007
SspMI	CTAG	6 cut(s)	113, 735, 1049, 1442, 2031, 2540
StyD4I	CCNGG	5 cut(s)	585, 1558, 2311, 2602, 2802
StyI	CCWWGG	2 cut(s)	653, 1185
TaaI	ACNGT	9 cut(s)	270, 598, 625, 670, 1491, 1545, 1986, 2672, 2855
TaiI	ACGT	6 cut(s)	123, 180, 284, 2623, 2640, 2692
TaqI	TCGA	7 cut(s)	363, 370, 602, 1748, 2146, 2245, 2950
TaqII	GACCGA	2 cut(s)	2167, 3051
TatI	WGTACW	2 cut(s)	1596, 2448
TauI	GCSGC	2 cut(s)	1255, 3053
TscAI	CASTG	5 cut(s)	601, 854, 1336, 1888, 2860
TseFI	GTSAC	5 cut(s)	1399, 1756, 1883, 2623, 2935
Tsp45I	GTSAC	5 cut(s)	1399, 1756, 1883, 2623, 2935
TspGWI	ACGGA	2 cut(s)	1962, 2600
TspRI	CASTG	5 cut(s)	601, 854, 1336, 1888, 2860
Tth111I	GACNNNGTC	1 cut(s)	2636
Van91I	CCANNNNNTGG	3 cut(s)	839, 2359, 2963
Vha464I	CTTAAG	1 cut(s)	907
VneI	GTGCAC	1 cut(s)	592
VpaK11BI	GGWCC	4 cut(s)	323, 842, 2150, 2954
XagI	CCTNNNNNAGG	1 cut(s)	2316
XapI	RAATTY	5 cut(s)	2177, 2364, 2394, 2921, 2930
XceI	RCATGY	6 cut(s)	408, 488, 1400, 1609, 2878, 3060
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3005
XhoI	CTCGAG	2 cut(s)	2244, 2949
XmiI	GTMKAC	1 cut(s)	1104
XmnI	GAANNNNTTC	4 cut(s)	178, 1140, 2142, 2516
XspI	CTAG	6 cut(s)	113, 735, 1049, 1442, 2031, 2540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.