E3 ubiquitin-protein ligase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G06880 AT3G06880 AT3G06880 AT3G06880 AT3G06880 |
| fragaria_vesca | FvH4_4g18342 |
| malus_domestica | MD13G1167100.v1.1 |
| prunus_persica | Prupe.1G134400_v2.0.a1 Prupe.1G134400_v2.0.a1 Prupe.1G134400_v2.0.a1 Prupe.1G134400_v2.0.a1 |
| pyrus_communis | pycom13g14290 |
| rosa_chinensis | RchiOBHm_Chr4g0422831 |
| rosa_laevigata | RLG00000007602 |
| rosa_roxburghii | Rroxscaffold_5G00364690 |
| rosa_rugosa | Rorug04G0181700 |
| rosa_samantha | Rh4AG242000 Rh4BG245600 Rh4CG255900 Rh4DG240600 |
| rosa_wichuraiana | Rw4G020840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1673, 3275 |
| Acc36I | ACCTGC | 4 cut(s) | 319, 436, 1631, 2419 |
| Acc65I | GGTACC | 1 cut(s) | 3905 |
| AccB1I | GGYRCC | 1 cut(s) | 3905 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 2350, 2769, 3591 |
| AccI | GTMKAC | 1 cut(s) | 1750 |
| AccII | CGCG | 1 cut(s) | 266 |
| AciI | CCGC | 3 cut(s) | 264, 720, 3233 |
| AclWI | GGATC | 8 cut(s) | 598, 857, 969, 1380, 1635, 3289, 3928, 3941 |
| AcoI | YGGCCR | 2 cut(s) | 3385, 3412 |
| AcuI | CTGAAG | 3 cut(s) | 1044, 1239, 2475 |
| AfaI | GTAC | 2 cut(s) | 1511, 3907 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 415, 2350, 2769, 3207, 3208, 3591 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1099 |
| AhlI | ACTAGT | 1 cut(s) | 2054 |
| AjnI | CCWGG | 2 cut(s) | 2860, 3259 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 368, 400, 2503, 2535 |
| Alw21I | GWGCWC | 5 cut(s) | 187, 855, 1076, 1777, 3225 |
| Alw26I | GTCTC | 7 cut(s) | 58, 164, 695, 2409, 2900, 3258, 3905 |
| Alw44I | GTGCAC | 1 cut(s) | 851 |
| AlwI | GGATC | 8 cut(s) | 598, 857, 969, 1380, 1635, 3289, 3928, 3941 |
| AoxI | GGCC | 3 cut(s) | 3385, 3412, 3561 |
| ApaI | GGGCCC | 1 cut(s) | 3565 |
| ApaLI | GTGCAC | 1 cut(s) | 851 |
| AseI | ATTAAT | 3 cut(s) | 2679, 2939, 3615 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 1387, 2515, 2740, 2883, 3363 |
| Asp718I | GGTACC | 1 cut(s) | 3905 |
| AspA2I | CCTAGG | 1 cut(s) | 994 |
| AspLEI | GCGC | 2 cut(s) | 340, 3116 |
| AspS9I | GGNCC | 2 cut(s) | 3561, 3562 |
| AsuC2I | CCSGG | 1 cut(s) | 3560 |
| AsuHPI | GGTGA | 2 cut(s) | 1367, 3487 |
| AsuII | TTCGAA | 2 cut(s) | 204, 3255 |
| AsuNHI | GCTAGC | 1 cut(s) | 1636 |
| AvrII | CCTAGG | 1 cut(s) | 994 |
| BaeGI | GKGCMC | 2 cut(s) | 855, 3565 |
| BalI | TGGCCA | 1 cut(s) | 3414 |
| BamHI | GGATCC | 1 cut(s) | 3933 |
| BanI | GGYRCC | 1 cut(s) | 3905 |
| BanII | GRGCYC | 2 cut(s) | 2037, 3565 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1636, 1668, 3850, 3882 |
| BauI | CACGAG | 1 cut(s) | 3058 |
| BbsI | GAAGAC | 4 cut(s) | 1737, 2689, 3700, 3771 |
| Bbv12I | GWGCWC | 5 cut(s) | 187, 855, 1076, 1777, 3225 |
| BccI | CCATC | 9 cut(s) | 640, 920, 1112, 1363, 2108, 2175, 2992, 3152, 3305 |
| BceAI | ACGGC | 1 cut(s) | 3400 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 261, 295 |
| BciT130I | CCWGG | 2 cut(s) | 2862, 3261 |
| BciVI | GTATCC | 1 cut(s) | 716 |
| BclI | TGATCA | 1 cut(s) | 3921 |
| BcnI | CCSGG | 1 cut(s) | 3560 |
| BcoDI | GTCTC | 7 cut(s) | 58, 164, 695, 2409, 2900, 3258, 3905 |
| BcuI | ACTAGT | 1 cut(s) | 2054 |
| BfaI | CTAG | 9 cut(s) | 144, 995, 1475, 1637, 2055, 2174, 2745, 2873, 2888 |
| BfmI | CTRYAG | 9 cut(s) | 326, 464, 1190, 1725, 1751, 1833, 2541, 3784, 3941 |
| BfoI | RGCGCY | 1 cut(s) | 341 |
| BfuAI | ACCTGC | 4 cut(s) | 319, 436, 1631, 2419 |
| BfuI | GTATCC | 1 cut(s) | 716 |
| BglII | AGATCT | 2 cut(s) | 1156, 2826 |
| BlnI | CCTAGG | 1 cut(s) | 994 |
| BlpI | GCTNAGC | 1 cut(s) | 3790 |
| Bme1390I | CCNGG | 3 cut(s) | 2862, 3261, 3560 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1099 |
| BmgT120I | GGNCC | 2 cut(s) | 3561, 3562 |
| BmiI | GGNNCC | 6 cut(s) | 333, 2532, 3360, 3563, 3907, 3935 |
| BmrFI | CCNGG | 3 cut(s) | 2862, 3261, 3560 |
| BmrI | ACTGGG | 1 cut(s) | 250 |
| BmtI | GCTAGC | 1 cut(s) | 1640 |
| BmuI | ACTGGG | 1 cut(s) | 250 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2980 |
| BpiI | GAAGAC | 4 cut(s) | 1737, 2689, 3700, 3771 |
| Bpu10I | CCTNAGC | 1 cut(s) | 787 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3790 |
| Bpu14I | TTCGAA | 2 cut(s) | 204, 3255 |
| BpuEI | CTTGAG | 4 cut(s) | 290, 887, 2423, 3101 |
| BpuMI | CCSGG | 1 cut(s) | 3560 |
| BsaAI | YACGTR | 1 cut(s) | 1324 |
| BsaBI | GATNNNNATC | 2 cut(s) | 960, 2134 |
| BsaJI | CCNNGG | 4 cut(s) | 485, 994, 2240, 3415 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 415, 2350, 2769, 3207, 3208, 3591 |
| Bse118I | RCCGGY | 1 cut(s) | 3725 |
| Bse1I | ACTGG | 8 cut(s) | 72, 245, 839, 883, 1698, 2214, 2388, 3291 |
| Bse3DI | GCAATG | 5 cut(s) | 1978, 2119, 2430, 2763, 3756 |
| Bse8I | GATNNNNATC | 2 cut(s) | 960, 2134 |
| BseBI | CCWGG | 2 cut(s) | 2862, 3261 |
| BseDI | CCNNGG | 4 cut(s) | 485, 994, 2240, 3415 |
| BseJI | GATNNNNATC | 2 cut(s) | 960, 2134 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 415, 2350, 2769, 3207, 3208, 3591 |
| BseMI | GCAATG | 5 cut(s) | 1978, 2119, 2430, 2763, 3756 |
| BseMII | CTCAG | 8 cut(s) | 175, 426, 722, 801, 1358, 3168, 3804, 3842 |
| BseNI | ACTGG | 8 cut(s) | 72, 245, 839, 883, 1698, 2214, 2388, 3291 |
| BseRI | GAGGAG | 3 cut(s) | 13, 3020, 3866 |
| BseSI | GKGCMC | 2 cut(s) | 855, 3565 |
| BsgI | GTGCAG | 2 cut(s) | 1173, 2674 |
| Bsh1236I | CGCG | 1 cut(s) | 266 |
| BshFI | GGCC | 3 cut(s) | 3387, 3414, 3563 |
| BshNI | GGYRCC | 1 cut(s) | 3905 |
| BsiHKAI | GWGCWC | 5 cut(s) | 187, 855, 1076, 1777, 3225 |
| BsiSI | CCGG | 3 cut(s) | 335, 3559, 3726 |
| BslFI | GGGAC | 3 cut(s) | 2762, 3224, 3838 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 415, 2350, 2769, 3207, 3208, 3591 |
| BsmAI | GTCTC | 7 cut(s) | 58, 164, 695, 2409, 2900, 3258, 3905 |
| BsmBI | CGTCTC | 3 cut(s) | 164, 2409, 3905 |
| BsmFI | GGGAC | 3 cut(s) | 2762, 3224, 3838 |
| BsmI | GAATGC | 2 cut(s) | 114, 2486 |
| BsnI | GGCC | 3 cut(s) | 3387, 3414, 3563 |
| Bsp119I | TTCGAA | 2 cut(s) | 204, 3255 |
| Bsp120I | GGGCCC | 1 cut(s) | 3561 |
| Bsp1286I | GDGCHC | 7 cut(s) | 187, 855, 1076, 1777, 2037, 3225, 3565 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3790 |
| Bsp19I | CCATGG | 1 cut(s) | 3415 |
| BspACI | CCGC | 3 cut(s) | 264, 720, 3233 |
| BspANI | GGCC | 3 cut(s) | 3387, 3414, 3563 |
| BspCNI | CTCAG | 8 cut(s) | 174, 425, 721, 800, 1357, 3167, 3803, 3841 |
| BspFNI | CGCG | 1 cut(s) | 266 |
| BspLI | GGNNCC | 6 cut(s) | 333, 2532, 3360, 3563, 3907, 3935 |
| BspMAI | CTGCAG | 5 cut(s) | 330, 468, 1194, 1837, 3788 |
| BspMI | ACCTGC | 4 cut(s) | 319, 436, 1631, 2419 |
| BspOI | GCTAGC | 1 cut(s) | 1640 |
| BspPI | GGATC | 8 cut(s) | 598, 857, 969, 1380, 1635, 3289, 3928, 3941 |
| BspQI | GCTCTTC | 1 cut(s) | 799 |
| BspT104I | TTCGAA | 2 cut(s) | 204, 3255 |
| BspT107I | GGYRCC | 1 cut(s) | 3905 |
| BsrDI | GCAATG | 5 cut(s) | 1978, 2119, 2430, 2763, 3756 |
| BsrFI | RCCGGY | 1 cut(s) | 3725 |
| BsrI | ACTGG | 8 cut(s) | 72, 245, 839, 883, 1698, 2214, 2388, 3291 |
| BssAI | RCCGGY | 1 cut(s) | 3725 |
| BssECI | CCNNGG | 4 cut(s) | 485, 994, 2240, 3415 |
| BssSI | CACGAG | 1 cut(s) | 3058 |
| BssT1I | CCWWGG | 4 cut(s) | 485, 994, 2240, 3415 |
| Bst2BI | CACGAG | 1 cut(s) | 3058 |
| Bst2UI | CCWGG | 2 cut(s) | 2862, 3261 |
| Bst4CI | ACNGT | 6 cut(s) | 1809, 1895, 2089, 2753, 3146, 3650 |
| Bst6I | CTCTTC | 3 cut(s) | 31, 799, 2261 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 325, 463, 1251 |
| BstBAI | YACGTR | 1 cut(s) | 1324 |
| BstBI | TTCGAA | 2 cut(s) | 204, 3255 |
| BstC8I | GCNNGC | 6 cut(s) | 468, 824, 1638, 2193, 2237, 2729 |
| BstDSI | CCRYGG | 1 cut(s) | 3415 |
| BstFNI | CGCG | 1 cut(s) | 266 |
| BstH2I | RGCGCY | 1 cut(s) | 341 |
| BstHHI | GCGC | 2 cut(s) | 340, 3116 |
| BstMAI | GTCTC | 7 cut(s) | 58, 164, 695, 2409, 2900, 3258, 3905 |
| BstNI | CCWGG | 2 cut(s) | 2862, 3261 |
| BstNSI | RCATGY | 6 cut(s) | 1996, 2195, 2239, 2568, 2895, 3243 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2980 |
| BstSCI | CCNGG | 3 cut(s) | 2860, 3259, 3558 |
| BstSFI | CTRYAG | 9 cut(s) | 326, 464, 1190, 1725, 1751, 1833, 2541, 3784, 3941 |
| BstSLI | GKGCMC | 2 cut(s) | 855, 3565 |
| BstSNI | TACGTA | 1 cut(s) | 1324 |
| BstUI | CGCG | 1 cut(s) | 266 |
| BstV2I | GAAGAC | 4 cut(s) | 1737, 2689, 3700, 3771 |
| BstX2I | RGATCY | 3 cut(s) | 1156, 2826, 3933 |
| BstYI | RGATCY | 3 cut(s) | 1156, 2826, 3933 |
| BsuI | GTATCC | 1 cut(s) | 716 |
| BsuRI | GGCC | 3 cut(s) | 3387, 3414, 3563 |
| BtgI | CCRYGG | 1 cut(s) | 3415 |
| BtsI | GCAGTG | 5 cut(s) | 452, 715, 3106, 3495, 3879 |
| BveI | ACCTGC | 4 cut(s) | 319, 436, 1631, 2419 |
| Cac8I | GCNNGC | 6 cut(s) | 468, 824, 1638, 2193, 2237, 2729 |
| CfoI | GCGC | 2 cut(s) | 340, 3116 |
| Cfr10I | RCCGGY | 1 cut(s) | 3725 |
| Cfr13I | GGNCC | 2 cut(s) | 3561, 3562 |
| Csp6I | GTAC | 2 cut(s) | 1510, 3906 |
| CviQI | GTAC | 2 cut(s) | 1510, 3906 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1099 |
| EaeI | YGGCCR | 2 cut(s) | 3385, 3412 |
| Eam1104I | CTCTTC | 3 cut(s) | 31, 799, 2261 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1099 |
| EarI | CTCTTC | 3 cut(s) | 31, 799, 2261 |
| Eco105I | TACGTA | 1 cut(s) | 1324 |
| Eco130I | CCWWGG | 4 cut(s) | 485, 994, 2240, 3415 |
| Eco24I | GRGCYC | 2 cut(s) | 2037, 3565 |
| Eco57I | CTGAAG | 3 cut(s) | 1044, 1239, 2475 |
| EcoRI | GAATTC | 1 cut(s) | 197 |
| EcoRII | CCWGG | 2 cut(s) | 2860, 3259 |
| EcoT14I | CCWWGG | 4 cut(s) | 485, 994, 2240, 3415 |
| EcoT22I | ATGCAT | 3 cut(s) | 771, 2105, 3439 |
| EcoT38I | GRGCYC | 2 cut(s) | 2037, 3565 |
| ErhI | CCWWGG | 4 cut(s) | 485, 994, 2240, 3415 |
| Esp3I | CGTCTC | 3 cut(s) | 164, 2409, 3905 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3627, 3659 |
| FaqI | GGGAC | 3 cut(s) | 2762, 3224, 3838 |
| FauNDI | CATATG | 1 cut(s) | 1090 |
| FbaI | TGATCA | 1 cut(s) | 3921 |
| FblI | GTMKAC | 1 cut(s) | 1750 |
| FriOI | GRGCYC | 2 cut(s) | 2037, 3565 |
| FspBI | CTAG | 9 cut(s) | 144, 995, 1475, 1637, 2055, 2174, 2745, 2873, 2888 |
| GlaI | GCGC | 2 cut(s) | 339, 3115 |
| HaeII | RGCGCY | 1 cut(s) | 341 |
| HaeIII | GGCC | 3 cut(s) | 3387, 3414, 3563 |
| HapII | CCGG | 3 cut(s) | 335, 3559, 3726 |
| HhaI | GCGC | 2 cut(s) | 340, 3116 |
| Hin6I | GCGC | 2 cut(s) | 338, 3114 |
| HinP1I | GCGC | 2 cut(s) | 338, 3114 |
| HindIII | AAGCTT | 2 cut(s) | 583, 1423 |
| HpaII | CCGG | 3 cut(s) | 335, 3559, 3726 |
| HphI | GGTGA | 2 cut(s) | 1367, 3487 |
| Hpy166II | GTNNAC | 7 cut(s) | 524, 853, 1469, 1751, 3067, 3149, 3319 |
| Hpy188III | TCNNGA | 9 cut(s) | 307, 555, 904, 1430, 1609, 1738, 2798, 3175, 3441 |
| Hpy8I | GTNNAC | 7 cut(s) | 524, 853, 1469, 1751, 3067, 3149, 3319 |
| HpyCH4III | ACNGT | 6 cut(s) | 1809, 1895, 2089, 2753, 3146, 3650 |
| HpyCH4IV | ACGT | 3 cut(s) | 157, 1323, 2587 |
| HpySE526I | ACGT | 3 cut(s) | 157, 1323, 2587 |
| HspAI | GCGC | 2 cut(s) | 338, 3114 |
| KpnI | GGTACC | 1 cut(s) | 3909 |
| Ksp22I | TGATCA | 1 cut(s) | 3921 |
| LguI | GCTCTTC | 1 cut(s) | 799 |
| LmnI | GCTCC | 9 cut(s) | 214, 432, 2152, 2161, 2373, 2530, 2869, 3104, 3220 |
| MaeI | CTAG | 9 cut(s) | 144, 995, 1475, 1637, 2055, 2174, 2745, 2873, 2888 |
| MaeII | ACGT | 3 cut(s) | 157, 1323, 2587 |
| MfeI | CAATTG | 1 cut(s) | 3621 |
| MflI | RGATCY | 3 cut(s) | 1156, 2826, 3933 |
| MhlI | GDGCHC | 7 cut(s) | 187, 855, 1076, 1777, 2037, 3225, 3565 |
| MlsI | TGGCCA | 1 cut(s) | 3414 |
| MluNI | TGGCCA | 1 cut(s) | 3414 |
| MlyI | GAGTC | 8 cut(s) | 366, 761, 1011, 1109, 2639, 2803, 2850, 3820 |
| MmeI | TCCRAC | 2 cut(s) | 2347, 2595 |
| Mox20I | TGGCCA | 1 cut(s) | 3414 |
| Mph1103I | ATGCAT | 3 cut(s) | 771, 2105, 3439 |
| MroXI | GAANNNNTTC | 5 cut(s) | 1387, 2515, 2740, 2883, 3363 |
| MscI | TGGCCA | 1 cut(s) | 3414 |
| MslI | CAYNNNNRTG | 2 cut(s) | 978, 3156 |
| Msp20I | TGGCCA | 1 cut(s) | 3414 |
| MspA1I | CMGCKG | 1 cut(s) | 1756 |
| MspI | CCGG | 3 cut(s) | 335, 3559, 3726 |
| MspR9I | CCNGG | 3 cut(s) | 2862, 3261, 3560 |
| MunI | CAATTG | 1 cut(s) | 3621 |
| Mva1269I | GAATGC | 2 cut(s) | 114, 2486 |
| MvaI | CCWGG | 2 cut(s) | 2862, 3261 |
| MvnI | CGCG | 1 cut(s) | 266 |
| NciI | CCSGG | 1 cut(s) | 3560 |
| NcoI | CCATGG | 1 cut(s) | 3415 |
| NdeI | CATATG | 1 cut(s) | 1090 |
| NheI | GCTAGC | 1 cut(s) | 1636 |
| NlaIV | GGNNCC | 6 cut(s) | 333, 2532, 3360, 3563, 3907, 3935 |
| NmuCI | GTSAC | 3 cut(s) | 358, 753, 3625 |
| NsiI | ATGCAT | 3 cut(s) | 771, 2105, 3439 |
| NspI | RCATGY | 6 cut(s) | 1996, 2195, 2239, 2568, 2895, 3243 |
| NspV | TTCGAA | 2 cut(s) | 204, 3255 |
| PaeI | GCATGC | 2 cut(s) | 2195, 2239 |
| PciSI | GCTCTTC | 1 cut(s) | 799 |
| PctI | GAATGC | 2 cut(s) | 114, 2486 |
| PdmI | GAANNNNTTC | 5 cut(s) | 1387, 2515, 2740, 2883, 3363 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 2350, 2769, 3591 |
| PfoI | TCCNGGA | 1 cut(s) | 2860 |
| PleI | GAGTC | 8 cut(s) | 365, 760, 1011, 1108, 2639, 2802, 2849, 3820 |
| PpsI | GAGTC | 8 cut(s) | 365, 760, 1011, 1108, 2639, 2802, 2849, 3820 |
| Ppu21I | YACGTR | 1 cut(s) | 1324 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2980 |
| PshBI | ATTAAT | 3 cut(s) | 2679, 2939, 3615 |
| PsiI | TTATAA | 2 cut(s) | 1673, 3275 |
| Psp6I | CCWGG | 2 cut(s) | 2860, 3259 |
| PspGI | CCWGG | 2 cut(s) | 2860, 3259 |
| PspN4I | GGNNCC | 6 cut(s) | 333, 2532, 3360, 3563, 3907, 3935 |
| PspOMI | GGGCCC | 1 cut(s) | 3561 |
| PspPI | GGNCC | 2 cut(s) | 3561, 3562 |
| PstI | CTGCAG | 5 cut(s) | 330, 468, 1194, 1837, 3788 |
| PsuI | RGATCY | 3 cut(s) | 1156, 2826, 3933 |
| PvuII | CAGCTG | 1 cut(s) | 1756 |
| RsaI | GTAC | 2 cut(s) | 1511, 3907 |
| RsaNI | GTAC | 2 cut(s) | 1510, 3906 |
| RseI | CAYNNNNRTG | 2 cut(s) | 978, 3156 |
| SapI | GCTCTTC | 1 cut(s) | 799 |
| Sau96I | GGNCC | 2 cut(s) | 3561, 3562 |
| SbfI | CCTGCAGG | 1 cut(s) | 468 |
| SchI | GAGTC | 8 cut(s) | 366, 761, 1011, 1109, 2639, 2803, 2850, 3820 |
| ScrFI | CCNGG | 3 cut(s) | 2862, 3261, 3560 |
| SdaI | CCTGCAGG | 1 cut(s) | 468 |
| SduI | GDGCHC | 7 cut(s) | 187, 855, 1076, 1777, 2037, 3225, 3565 |
| SfcI | CTRYAG | 9 cut(s) | 326, 464, 1190, 1725, 1751, 1833, 2541, 3784, 3941 |
| SfuI | TTCGAA | 2 cut(s) | 204, 3255 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 978, 3156 |
| SmlI | CTYRAG | 4 cut(s) | 305, 902, 2438, 3080 |
| SmoI | CTYRAG | 4 cut(s) | 305, 902, 2438, 3080 |
| SnaBI | TACGTA | 1 cut(s) | 1324 |
| SpeI | ACTAGT | 1 cut(s) | 2054 |
| SphI | GCATGC | 2 cut(s) | 2195, 2239 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 468 |
| SsiI | CCGC | 3 cut(s) | 264, 720, 3233 |
| SspI | AATATT | 3 cut(s) | 761, 2683, 3396 |
| SspMI | CTAG | 9 cut(s) | 144, 995, 1475, 1637, 2055, 2174, 2745, 2873, 2888 |
| StyD4I | CCNGG | 3 cut(s) | 2860, 3259, 3558 |
| StyI | CCWWGG | 4 cut(s) | 485, 994, 2240, 3415 |
| TaaI | ACNGT | 6 cut(s) | 1809, 1895, 2089, 2753, 3146, 3650 |
| TaiI | ACGT | 3 cut(s) | 160, 1326, 2590 |
| TaqI | TCGA | 6 cut(s) | 204, 271, 345, 2498, 2844, 3255 |
| TatI | WGTACW | 1 cut(s) | 1509 |
| TauI | GCSGC | 1 cut(s) | 266 |
| TseFI | GTSAC | 3 cut(s) | 358, 753, 3625 |
| Tsp45I | GTSAC | 3 cut(s) | 358, 753, 3625 |
| TspGWI | ACGGA | 2 cut(s) | 541, 821 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 2350, 2769, 3591 |
| VneI | GTGCAC | 1 cut(s) | 851 |
| VspI | ATTAAT | 3 cut(s) | 2679, 2939, 3615 |
| XceI | RCATGY | 6 cut(s) | 1996, 2195, 2239, 2568, 2895, 3243 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 955 |
| XmaJI | CCTAGG | 1 cut(s) | 994 |
| XmiI | GTMKAC | 1 cut(s) | 1750 |
| XmnI | GAANNNNTTC | 5 cut(s) | 1387, 2515, 2740, 2883, 3363 |
| XspI | CTAG | 9 cut(s) | 144, 995, 1475, 1637, 2055, 2174, 2745, 2873, 2888 |
| Zsp2I | ATGCAT | 3 cut(s) | 771, 2105, 3439 |