Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004808

Physical Location & Seq

Genomic Coordinates Forward (+)

12573279 .. 12576730

Gene Structure 3452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G158700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCGACTCGGTTACAGAAGATCGAGGGAGACGAGTCCGTACTGTTGCGCGTAACTCATTCGAACCTCAAGACCTTCTCCGCCGATATCCGCTTCTCCCTCCAGAGCTCTGTGGAGTCCGTCAAGGACAAGCTATGGCGTAAATGCGGCACTTCTGTAGATTCCATGTCGCTCCACCTCTACGACGAGGCCAACACCCAAGTCTCCATTTTGGACGACAACTCCAAGCCCCTAGGCTTCTATTCCCCTCACGACGGCTACCGGCTACATGTTATAGATCTGGACCCTTCATCAGTGACCTCTGGTGGGTGGCTTGAGGACACATCGTTGGTGGAGAAGTACACTATTTCTCAAGAAGCTTATGAGAAACGAGATGGGACTTATAGAAAATTTAAGGACAAATTGGCATCTCAGAACCCATCAACTTTTGAGAATAAAATACCAGAGAACTATATGGAAGATCTCCGCGTGAATATCAAGGTAGGAGATAGATGTGAAGTTCAACCAGGGGATAAAAGAGGTGTTGTTAAATATGTTGGTCGGGCAGAATCTCTGGCTCCTGGTTTCTGGATTGGAGTTCAATATGATGAACCATTGGGAAAGCATGATGGCATGGTGAAAGGAACACGATATTTCAATTGCCCCCCACTTCATGGTGGAATGGTTCGGCCAGACAAAGTAAAGGTTGGTGACTACCCTGAACGAGATCCATTCGAGGAGGATGAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009524 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP_GLY Ubiquitin_2

Protein Analysis

244

Amino Acids

27.56

Weight (kDa)

5.46

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10220
fragaria_vesca	FvH4_4g13730
malus_domestica	MD04G1012500.v1.1
prunus_persica	Prupe.1G158700_v2.0.a1 Prupe.1G158700_v2.0.a1 Prupe.1G158700_v2.0.a1 Prupe.7G257800_v2.0.a1
pyrus_communis	pycom04g01000
rosa_chinensis	RchiOBHm_Chr4g0414381 RchiOBHm_Chr6g0280571
rosa_laevigata	RLG00000008151 RLG00000013048 RLG00000013049 RLG00000013783
rosa_multiflora	Rmu_sc0001432.1_g000007 Rmu_sc0016990.1_g000001 Rmu_sc0029306.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358240 Rroxscaffold_7G00187940
rosa_rugosa	Rorug04G0127600 Rorug04G0127700 Rorug04G0127800
rosa_samantha	Rh4AG185700 Rh4BG185000 Rh4CG198300 Rh6AG245100 Rh6CG249100 Rh6DG239900
rosa_wichuraiana	Rw0G001630 Rw4G015880 Rw6G021210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	653
AccII	CGCG	2 cut(s)	51, 468
AciI	CCGC	4 cut(s)	81, 91, 147, 466
AclWI	GGATC	1 cut(s)	701
AcoI	YGGCCR	1 cut(s)	668
AcsI	RAATTY	2 cut(s)	389, 726
AfaI	GTAC	2 cut(s)	42, 341
AfiI	CCNNNNNNNGG	3 cut(s)	254, 306, 653
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	3 cut(s)	503, 581, 637
AjnI	CCWGG	2 cut(s)	505, 559
AluBI	AGCT	3 cut(s)	108, 133, 359
AluI	AGCT	3 cut(s)	108, 133, 359
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	2 cut(s)	24, 208
AlwI	GGATC	1 cut(s)	701
AoxI	GGCC	2 cut(s)	189, 668
ApoI	RAATTY	2 cut(s)	389, 726
AspA2I	CCTAGG	1 cut(s)	232
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	283
AsuHPI	GGTGA	2 cut(s)	628, 701
AsuII	TTCGAA	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	283
AvrII	CCTAGG	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	110
BccI	CCATC	3 cut(s)	368, 427, 602
BceAI	ACGGC	1 cut(s)	271
BciT130I	CCWGG	2 cut(s)	507, 561
BcoDI	GTCTC	2 cut(s)	24, 208
BfaI	CTAG	1 cut(s)	233
BfmI	CTRYAG	1 cut(s)	156
BglII	AGATCT	2 cut(s)	277, 460
BisI	GCNGC	1 cut(s)	148
BlnI	CCTAGG	1 cut(s)	232
BlsI	GCNGC	1 cut(s)	149
Bme1390I	CCNGG	2 cut(s)	507, 561
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	2 cut(s)	285, 558
BmrFI	CCNGG	2 cut(s)	507, 561
BmsI	GCATC	1 cut(s)	416
BpmI	CTGGAG	1 cut(s)	86
Bpu14I	TTCGAA	1 cut(s)	62
BpuEI	CTTGAG	3 cut(s)	53, 335, 336
BsaJI	CCNNGG	2 cut(s)	232, 506
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	3 cut(s)	254, 306, 653
Bse118I	RCCGGY	1 cut(s)	261
BseBI	CCWGG	2 cut(s)	507, 561
BseDI	CCNNGG	2 cut(s)	232, 506
BseGI	GGATG	1 cut(s)	727
BseLI	CCNNNNNNNGG	3 cut(s)	254, 306, 653
BseMII	CTCAG	1 cut(s)	425
BseRI	GAGGAG	1 cut(s)	731
Bsh1236I	CGCG	2 cut(s)	51, 468
BshFI	GGCC	2 cut(s)	191, 670
BsiHKAI	GWGCWC	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	262
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	3 cut(s)	254, 306, 653
BsmAI	GTCTC	2 cut(s)	24, 208
BsmBI	CGTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	391
BsnI	GGCC	2 cut(s)	191, 670
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	4 cut(s)	21, 277, 460, 706
BspACI	CCGC	4 cut(s)	81, 91, 147, 466
BspANI	GGCC	2 cut(s)	191, 670
BspCNI	CTCAG	1 cut(s)	424
BspFNI	CGCG	2 cut(s)	51, 468
BspLI	GGNNCC	2 cut(s)	285, 558
BspPI	GGATC	1 cut(s)	701
BspT104I	TTCGAA	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	261
BssAI	RCCGGY	1 cut(s)	261
BssECI	CCNNGG	2 cut(s)	232, 506
BssMI	GATC	4 cut(s)	21, 277, 460, 706
BssT1I	CCWWGG	1 cut(s)	232
Bst2UI	CCWGG	2 cut(s)	507, 561
Bst4CI	ACNGT	1 cut(s)	45
BstBI	TTCGAA	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	411
BstF5I	GGATG	1 cut(s)	727
BstFNI	CGCG	2 cut(s)	51, 468
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	4 cut(s)	24, 280, 463, 709
BstMAI	GTCTC	2 cut(s)	24, 208
BstMBI	GATC	4 cut(s)	21, 277, 460, 706
BstNI	CCWGG	2 cut(s)	507, 561
BstNSI	RCATGY	1 cut(s)	272
BstSCI	CCNGG	2 cut(s)	505, 559
BstSFI	CTRYAG	1 cut(s)	156
BstUI	CGCG	2 cut(s)	51, 468
BstX2I	RGATCY	3 cut(s)	277, 460, 706
BstYI	RGATCY	3 cut(s)	277, 460, 706
BsuRI	GGCC	2 cut(s)	191, 670
BtsCI	GGATG	1 cut(s)	727
BtsIMutI	CAGTG	1 cut(s)	300
CfoI	GCGC	1 cut(s)	51
Cfr10I	RCCGGY	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	283
Csp6I	GTAC	2 cut(s)	41, 340
CviAII	CATG	5 cut(s)	166, 269, 605, 613, 653
CviQI	GTAC	2 cut(s)	41, 340
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	4 cut(s)	23, 279, 462, 708
DpnII	GATC	4 cut(s)	21, 277, 460, 706
EaeI	YGGCCR	1 cut(s)	668
EciI	GGCGGA	1 cut(s)	70
Ecl136II	GAGCTC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	110
Eco32I	GATATC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	283
Eco53kI	GAGCTC	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	108
EcoRII	CCWGG	2 cut(s)	505, 559
EcoRV	GATATC	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	232
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	5 cut(s)	169, 272, 608, 616, 656
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	5 cut(s)	165, 268, 604, 612, 652
Fnu4HI	GCNGC	1 cut(s)	148
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	148
FspBI	CTAG	1 cut(s)	233
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	1 cut(s)	148
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	191, 670
HapII	CCGG	1 cut(s)	262
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	5 cut(s)	169, 272, 608, 616, 656
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HindIII	AAGCTT	1 cut(s)	357
HinfI	GANTC	5 cut(s)	7, 35, 116, 161, 548
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	2 cut(s)	628, 701
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188I	TCNGA	1 cut(s)	414
Hpy188III	TCNNGA	6 cut(s)	70, 103, 251, 281, 353, 568
Hpy8I	GTNNAC	1 cut(s)	342
Hpy99I	CGWCG	2 cut(s)	188, 257
HpyAV	CCTTC	2 cut(s)	85, 297
HpyCH4III	ACNGT	1 cut(s)	45
HpyF3I	CTNAG	1 cut(s)	411
Hsp92II	CATG	5 cut(s)	169, 272, 608, 616, 656
HspAI	GCGC	1 cut(s)	49
Kzo9I	GATC	4 cut(s)	21, 277, 460, 706
LmnI	GCTCC	2 cut(s)	177, 562
LweI	GCATC	1 cut(s)	416
MaeI	CTAG	1 cut(s)	233
MaeIII	GTNAC	4 cut(s)	12, 52, 295, 689
MalI	GATC	4 cut(s)	23, 279, 462, 708
MboI	GATC	4 cut(s)	21, 277, 460, 706
MboII	GAAGA	2 cut(s)	31, 470
MfeI	CAATTG	1 cut(s)	637
MflI	RGATCY	3 cut(s)	277, 460, 706
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	4 cut(s)	389, 401, 637, 726
MlyI	GAGTC	2 cut(s)	44, 125
MseI	TTAA	3 cut(s)	393, 528, 730
MspI	CCGG	1 cut(s)	262
MspR9I	CCNGG	2 cut(s)	507, 561
MunI	CAATTG	1 cut(s)	637
MvaI	CCWGG	2 cut(s)	507, 561
MvnI	CGCG	2 cut(s)	51, 468
NdeII	GATC	4 cut(s)	21, 277, 460, 706
NlaIII	CATG	5 cut(s)	169, 272, 608, 616, 656
NlaIV	GGNNCC	2 cut(s)	285, 558
NmuCI	GTSAC	2 cut(s)	295, 689
NspI	RCATGY	1 cut(s)	272
NspV	TTCGAA	1 cut(s)	62
PciI	ACATGT	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PfeI	GAWTC	2 cut(s)	161, 548
PflMI	CCANNNNNTGG	1 cut(s)	653
PkrI	GCNGC	1 cut(s)	149
PleI	GAGTC	2 cut(s)	43, 124
PpsI	GAGTC	2 cut(s)	43, 124
PscI	ACATGT	1 cut(s)	268
Psp124BI	GAGCTC	1 cut(s)	110
Psp6I	CCWGG	2 cut(s)	505, 559
PspGI	CCWGG	2 cut(s)	505, 559
PspN4I	GGNNCC	2 cut(s)	285, 558
PspPI	GGNCC	1 cut(s)	283
PsuI	RGATCY	3 cut(s)	277, 460, 706
RsaI	GTAC	2 cut(s)	42, 341
RsaNI	GTAC	2 cut(s)	41, 340
SacI	GAGCTC	1 cut(s)	110
SaqAI	TTAA	3 cut(s)	393, 528, 730
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	4 cut(s)	21, 277, 460, 706
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	2 cut(s)	44, 125
ScrFI	CCNGG	2 cut(s)	507, 561
SduI	GDGCHC	1 cut(s)	110
SfaNI	GCATC	1 cut(s)	416
SfcI	CTRYAG	1 cut(s)	156
SfuI	TTCGAA	1 cut(s)	62
SinI	GGWCC	1 cut(s)	283
SmlI	CTYRAG	3 cut(s)	68, 314, 351
SmoI	CTYRAG	3 cut(s)	68, 314, 351
Sse9I	AATT	4 cut(s)	389, 401, 637, 726
SsiI	CCGC	4 cut(s)	81, 91, 147, 466
SspMI	CTAG	1 cut(s)	233
SstI	GAGCTC	1 cut(s)	110
StyD4I	CCNGG	2 cut(s)	505, 559
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	45
TaqI	TCGA	3 cut(s)	24, 62, 714
TasI	AATT	4 cut(s)	389, 401, 637, 726
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	2 cut(s)	161, 548
Tru1I	TTAA	3 cut(s)	393, 528, 730
Tru9I	TTAA	3 cut(s)	393, 528, 730
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	2 cut(s)	295, 689
Tsp45I	GTSAC	2 cut(s)	295, 689
TspDTI	ATGAA	3 cut(s)	279, 603, 641
TspGWI	ACGGA	2 cut(s)	28, 109
TspRI	CASTG	1 cut(s)	300
Van91I	CCANNNNNTGG	1 cut(s)	653
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	2 cut(s)	389, 726
XceI	RCATGY	1 cut(s)	272
XmaJI	CCTAGG	1 cut(s)	232
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.