Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004808

Physical Location & Seq

Genomic Coordinates Reverse (-)

36354312 .. 36357782

Gene Structure 3471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G015880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCGACTCGGCTGCAGAAGATCGAAACGGACGAATCGGTACTACTGCGAGTGACGCATTCCAACCTCAAGACCTTCTCTGCCGTGAAAGACAAGCTATGGCGCAAATGCGGCACTTCTGTGAATTCCATGTCTCTTCATCTCTACGACGATGCCAACACCAAAGTCGCCGATCTCGCCGACAATTCCAGACCCCTCGGCTTCTATTCCCCTCTCGACGGGTTCCGGCTACATATTATAGACCTGGACCCGTCGTCGGTGACCTCCGGCGGGTGGCTGGAGGACACGTCATTGGTGGAGAAGTACACGATTTCCCAGGAAGCTTATGAGAAACGCGATGGCACTTTTAAAAAGTTTAAGGACAAATTGGCATCTCAGAATACATCAGCTGTTGATAATAAAATACCAGACAACTTCATGGAAGACCTCTGTGCGAATATTAAGGTAGGAGATAGATGTCAAGTTGAACCAGGGGACAAAAGAGGTGTTGTTAAATTTGTCGGCCGAGCAGAATCTTTGGCTCCTGGTTTCTGGGTTGGAGTTCAATATGATGAACCATTGGGAAAGCACGATGGCATGGTGAAAGGAACTCGTTACTTCAATTGCCCCCCTCTTCACGGTGCAGTGGTTCGACCCGACAAAGTCAAGGTTGGTGACTACCCAGAACGAGATCCCTTCGAGGAGGATGAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009524 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP_GLY Ubiquitin_2

Protein Analysis

231

Amino Acids

25.89

Weight (kDa)

5.61

Isoelectric Point (pI)

33.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_2	PF14560	25 - 86	3.3e-19	Ubiquitin-like domain
CAP_GLY	PF01302	149 - 215	4.3e-24	CAP-Gly domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10220
fragaria_vesca	FvH4_4g13730
malus_domestica	MD04G1012500.v1.1
prunus_persica	Prupe.1G158700_v2.0.a1 Prupe.1G158700_v2.0.a1 Prupe.1G158700_v2.0.a1 Prupe.7G257800_v2.0.a1
pyrus_communis	pycom04g01000
rosa_chinensis	RchiOBHm_Chr4g0414381 RchiOBHm_Chr6g0280571
rosa_laevigata	RLG00000008151 RLG00000013048 RLG00000013049 RLG00000013783
rosa_multiflora	Rmu_sc0001432.1_g000007 Rmu_sc0016990.1_g000001 Rmu_sc0029306.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358240 Rroxscaffold_7G00187940
rosa_rugosa	Rorug04G0127600 Rorug04G0127700 Rorug04G0127800
rosa_samantha	Rh4AG185700 Rh4BG185000 Rh4CG198300 Rh6AG245100 Rh6CG249100 Rh6DG239900
rosa_wichuraiana	Rw0G001630 Rw4G015880 Rw6G021210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	336
AciI	CCGC	2 cut(s)	111, 270
AclWI	GGATC	1 cut(s)	665
AcoI	YGGCCR	1 cut(s)	502
AcsI	RAATTY	3 cut(s)	124, 494, 690
AfaI	GTAC	2 cut(s)	42, 305
AfiI	CCNNNNNNNGG	5 cut(s)	218, 256, 270, 273, 617
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	3 cut(s)	467, 545, 601
AhdI	GACNNNNNGTC	1 cut(s)	253
AjiI	CACGTC	1 cut(s)	288
AjnI	CCWGG	4 cut(s)	243, 315, 469, 523
AleI	CACNNNNGTG	1 cut(s)	119
AluBI	AGCT	3 cut(s)	97, 323, 389
AluI	AGCT	3 cut(s)	97, 323, 389
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	1 cut(s)	665
AoxI	GGCC	1 cut(s)	502
ApeKI	GCWGC	1 cut(s)	13
ApoI	RAATTY	3 cut(s)	124, 494, 690
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	3 cut(s)	271, 592, 665
AvaII	GGWCC	1 cut(s)	247
BbsI	GAAGAC	1 cut(s)	429
BccI	CCATC	2 cut(s)	332, 566
BceAI	ACGGC	1 cut(s)	68
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	4 cut(s)	245, 317, 471, 525
BcoDI	GTCTC	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	14
BisI	GCNGC	2 cut(s)	14, 112
BlsI	GCNGC	2 cut(s)	15, 113
Bme1390I	CCNGG	4 cut(s)	245, 317, 471, 525
Bme18I	GGWCC	1 cut(s)	247
BmeRI	GACNNNNNGTC	1 cut(s)	253
BmgBI	CACGTC	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	3 cut(s)	224, 249, 522
BmrFI	CCNGG	4 cut(s)	245, 317, 471, 525
BmsI	GCATC	2 cut(s)	142, 380
BpiI	GAAGAC	1 cut(s)	429
BpmI	CTGGAG	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	53
BsaJI	CCNNGG	3 cut(s)	196, 315, 470
BsaXI	ACNNNNNCTCC	2 cut(s)	272, 302
Bsc4I	CCNNNNNNNGG	5 cut(s)	218, 256, 270, 273, 617
BseBI	CCWGG	4 cut(s)	245, 317, 471, 525
BseDI	CCNNGG	3 cut(s)	196, 315, 470
BseGI	GGATG	1 cut(s)	691
BseLI	CCNNNNNNNGG	5 cut(s)	218, 256, 270, 273, 617
BseMII	CTCAG	1 cut(s)	389
BseRI	GAGGAG	1 cut(s)	695
BseX3I	CGGCCG	1 cut(s)	502
BsgI	GTGCAG	1 cut(s)	642
Bsh1236I	CGCG	1 cut(s)	336
Bsh1285I	CGRYCG	1 cut(s)	505
BshFI	GGCC	1 cut(s)	504
BsiEI	CGRYCG	1 cut(s)	505
BsiSI	CCGG	2 cut(s)	226, 267
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	5 cut(s)	218, 256, 270, 273, 617
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	488
BsmI	GAATGC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	504
Bsp143I	GATC	3 cut(s)	21, 172, 670
BspACI	CCGC	2 cut(s)	111, 270
BspANI	GGCC	1 cut(s)	504
BspCNI	CTCAG	1 cut(s)	388
BspFNI	CGCG	1 cut(s)	336
BspLI	GGNNCC	3 cut(s)	224, 249, 522
BspMAI	CTGCAG	1 cut(s)	18
BspPI	GGATC	1 cut(s)	665
BssECI	CCNNGG	3 cut(s)	196, 315, 470
BssMI	GATC	3 cut(s)	21, 172, 670
Bst2UI	CCWGG	4 cut(s)	245, 317, 471, 525
Bst4CI	ACNGT	1 cut(s)	620
Bst6I	CTCTTC	2 cut(s)	141, 618
BstDEI	CTNAG	1 cut(s)	375
BstEII	GGTNACC	1 cut(s)	259
BstF5I	GGATG	1 cut(s)	691
BstFNI	CGCG	1 cut(s)	336
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	3 cut(s)	24, 175, 673
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	3 cut(s)	21, 172, 670
BstMCI	CGRYCG	1 cut(s)	505
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 111, 176
BstNI	CCWGG	4 cut(s)	245, 317, 471, 525
BstPI	GGTNACC	1 cut(s)	259
BstSCI	CCNGG	4 cut(s)	243, 315, 469, 523
BstSFI	CTRYAG	1 cut(s)	14
BstUI	CGCG	1 cut(s)	336
BstV2I	GAAGAC	1 cut(s)	429
BstX2I	RGATCY	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	670
BstZI	CGGCCG	1 cut(s)	502
BsuRI	GGCC	1 cut(s)	504
BtgZI	GCGATG	1 cut(s)	351
BtrI	CACGTC	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	691
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	1 cut(s)	630
CfoI	GCGC	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	247
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	41, 304
CviAII	CATG	3 cut(s)	130, 418, 577
CviJI	RGCY	9 cut(s)	13, 97, 201, 229, 277, 323, 389, 504, 521
CviKI_1	RGCY	9 cut(s)	13, 97, 201, 229, 277, 323, 389, 504, 521
CviQI	GTAC	2 cut(s)	41, 304
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	3 cut(s)	23, 174, 672
DpnII	GATC	3 cut(s)	21, 172, 670
DraI	TTTAAA	1 cut(s)	349
DriI	GACNNNNNGTC	1 cut(s)	253
EaeI	YGGCCR	1 cut(s)	502
EagI	CGGCCG	1 cut(s)	502
Eam1104I	CTCTTC	2 cut(s)	141, 618
Eam1105I	GACNNNNNGTC	1 cut(s)	253
EarI	CTCTTC	2 cut(s)	141, 618
EclXI	CGGCCG	1 cut(s)	502
Eco47I	GGWCC	1 cut(s)	247
Eco52I	CGGCCG	1 cut(s)	502
Eco91I	GGTNACC	1 cut(s)	259
EcoO65I	GGTNACC	1 cut(s)	259
EcoRI	GAATTC	1 cut(s)	124
EcoRII	CCWGG	4 cut(s)	243, 315, 469, 523
FaeI	CATG	3 cut(s)	133, 421, 580
FaiI	YATR	8 cut(s)	100, 131, 234, 239, 327, 419, 549, 578
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	3 cut(s)	129, 417, 576
FauI	CCCGC	1 cut(s)	263
Fnu4HI	GCNGC	2 cut(s)	14, 112
Fsp4HI	GCNGC	2 cut(s)	14, 112
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	2 cut(s)	14, 112
GsuI	CTGGAG	1 cut(s)	299
HaeIII	GGCC	1 cut(s)	504
HapII	CCGG	2 cut(s)	226, 267
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	3 cut(s)	133, 421, 580
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	321
HinfI	GANTC	3 cut(s)	7, 35, 512
HpaII	CCGG	2 cut(s)	226, 267
HphI	GGTGA	3 cut(s)	271, 592, 665
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188I	TCNGA	1 cut(s)	378
Hpy188III	TCNNGA	3 cut(s)	70, 189, 215
Hpy8I	GTNNAC	1 cut(s)	306
Hpy99I	CGWCG	4 cut(s)	152, 221, 256, 259
HpyAV	CCTTC	2 cut(s)	85, 685
HpyCH4III	ACNGT	1 cut(s)	620
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	2 cut(s)	16, 623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 111, 176
HpyF3I	CTNAG	1 cut(s)	375
HpySE526I	ACGT	1 cut(s)	287
Hsp92II	CATG	3 cut(s)	133, 421, 580
HspAI	GCGC	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	21, 172, 670
LmnI	GCTCC	1 cut(s)	526
LweI	GCATC	2 cut(s)	142, 380
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	4 cut(s)	52, 259, 593, 653
MalI	GATC	3 cut(s)	23, 174, 672
MboI	GATC	3 cut(s)	21, 172, 670
MboII	GAAGA	4 cut(s)	31, 128, 434, 605
MfeI	CAATTG	1 cut(s)	601
MflI	RGATCY	1 cut(s)	670
MluCI	AATT	6 cut(s)	124, 184, 365, 494, 601, 690
MmeI	TCCRAC	2 cut(s)	87, 517
MseI	TTAA	5 cut(s)	348, 357, 441, 492, 694
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	2 cut(s)	226, 267
MspR9I	CCNGG	4 cut(s)	245, 317, 471, 525
MunI	CAATTG	1 cut(s)	601
Mva1269I	GAATGC	1 cut(s)	58
MvaI	CCWGG	4 cut(s)	245, 317, 471, 525
MvnI	CGCG	1 cut(s)	336
MwoI	GCNNNNNNNGC	3 cut(s)	55, 111, 176
NdeII	GATC	3 cut(s)	21, 172, 670
NlaIII	CATG	3 cut(s)	133, 421, 580
NlaIV	GGNNCC	3 cut(s)	224, 249, 522
NmeAIII	GCCGAG	2 cut(s)	177, 530
NmuCI	GTSAC	3 cut(s)	52, 259, 653
OliI	CACNNNNGTG	1 cut(s)	119
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PctI	GAATGC	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	35, 512
PflFI	GACNNNGTC	1 cut(s)	641
PkrI	GCNGC	2 cut(s)	15, 113
Psp6I	CCWGG	4 cut(s)	243, 315, 469, 523
PspEI	GGTNACC	1 cut(s)	259
PspGI	CCWGG	4 cut(s)	243, 315, 469, 523
PspN4I	GGNNCC	3 cut(s)	224, 249, 522
PspPI	GGNCC	1 cut(s)	247
PstI	CTGCAG	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	670
PsyI	GACNNNGTC	1 cut(s)	641
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	2 cut(s)	42, 305
RsaNI	GTAC	2 cut(s)	41, 304
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	5 cut(s)	348, 357, 441, 492, 694
SatI	GCNGC	2 cut(s)	14, 112
Sau3AI	GATC	3 cut(s)	21, 172, 670
Sau96I	GGNCC	1 cut(s)	247
ScrFI	CCNGG	4 cut(s)	245, 317, 471, 525
SfaNI	GCATC	2 cut(s)	142, 380
SfcI	CTRYAG	1 cut(s)	14
SinI	GGWCC	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	6 cut(s)	124, 184, 365, 494, 601, 690
SsiI	CCGC	2 cut(s)	111, 270
SspI	AATATT	1 cut(s)	439
StyD4I	CCNGG	4 cut(s)	243, 315, 469, 523
TaaI	ACNGT	1 cut(s)	620
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	4 cut(s)	24, 216, 631, 678
TasI	AATT	6 cut(s)	124, 184, 365, 494, 601, 690
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	2 cut(s)	35, 512
Tru1I	TTAA	5 cut(s)	348, 357, 441, 492, 694
Tru9I	TTAA	5 cut(s)	348, 357, 441, 492, 694
TscAI	CASTG	1 cut(s)	630
TseFI	GTSAC	3 cut(s)	52, 259, 653
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	3 cut(s)	52, 259, 653
TspDTI	ATGAA	3 cut(s)	128, 406, 567
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	630
Tth111I	GACNNNGTC	1 cut(s)	641
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	3 cut(s)	124, 494, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.