Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004808

Physical Location & Seq

Genomic Coordinates Reverse (-)

20320866 .. 20325348

Gene Structure 4483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0127600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGAAGAATGTAGAAATGTGGAAATCAGTGGGAAGCATTGCGTTGCTATCTCTGTTTCTGGGTTTGCTATTGACCATGCTCTATGTCTCTGATCTGCATAACCCACTCTCTAGATTCCGCAGCAATTTCTCCTTTTCCCCTCTTCTCTTCAATTCCAGTCACCACTTGCTTCACCCTTTTCATGTCTCTCCTATCAGAAAGTTGGATAGAATATTTGCAGAAACCTTAATGTCTGCTCCCCCTAGAATAAATTTGAGGAAGGACCGTTTTCTCGAGGGGCCTGTGTTACAGGAATATACATTTGCTGCAAATTCTGTTCCTTTCAATAGCTGTCATGCTTCTACCATTGTTGAGGTTGATAAAGATCATTTTTTGGTTGCCTATTTTGGAGGGTCATCAGAGGGAGCACCTGATGTGAAAATTTGGTTGCAGACTTACAAGAATGGCTATTGGCAGTCGCCTATCATTGCTGATGAACAACCAGATGTTCCAATGTGGAATCCCGTGTTATTCAAACTTCCATCCGAGGAGCTGCTGTTGTTCTATAAAATAGGACAAGAGGTTCAAAAATGGAGTGGATGCTTGAAGAGGTCATCTGATAAAGGTGTTACCTGGACAGAAAGAGAACAACTTCCTCCTGGTATATTAGGACCAATAAAGAATAAGCCTATCCTGCTGGAAAATGGAGTTTTGCTCTGTGGATCCTCTGTTGAAAGTTGGAATTCTTGGGGGGCATGGGTGGAGGTCGCAACGGATTCTGTTAGGTCTTGGAGAAAGTATGGTCCTATTTACATTGAAAATGAAACTCTCAGTGTGATTCAGCCAGTTCCTTACCAGACTTCAAAAGGGACCTTGCGCCTTTTAATGCGATCCTTTGATCACATTGGTAGAGTTTGTATCTCAGAATCCCACGACGGTGGCCAAAACTGGGAATATGCAAAACCTACTGATCTCCCCAATCCAAACTCAGGTATTGATGGTGTAAAGCTAAGAGATGGCTCCATTTTACTTGCATATAATACAATCTCAAGGGGTGTACTTAAAGTTGCGCTCTCTGATGATGATGGGGACTCATGGCGTGATGCCGTGACATTGGAGGAGGATTTGGATATGGAGTTCTCATATCCAGCTGTTATTCAATCTAGTGATGGGTGTGTTCACATAACTTACACTTATAATAGGACACAAGTTAAGCATGTTGTCCTTAAACCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009524 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP_GLY Ubiquitin_2

Protein Analysis

405

Amino Acids

45.73

Weight (kDa)

6.02

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BNR_2	PF13088	123 - 388	5.2e-84	BNR repeat-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10220
fragaria_vesca	FvH4_4g13730
malus_domestica	MD04G1012500.v1.1
prunus_persica	Prupe.1G158700_v2.0.a1 Prupe.1G158700_v2.0.a1 Prupe.1G158700_v2.0.a1 Prupe.7G257800_v2.0.a1
pyrus_communis	pycom04g01000
rosa_chinensis	RchiOBHm_Chr4g0414381 RchiOBHm_Chr6g0280571
rosa_laevigata	RLG00000008151 RLG00000013048 RLG00000013049 RLG00000013783
rosa_multiflora	Rmu_sc0001432.1_g000007 Rmu_sc0016990.1_g000001 Rmu_sc0029306.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358240 Rroxscaffold_7G00187940
rosa_rugosa	Rorug04G0127600 Rorug04G0127700 Rorug04G0127800
rosa_samantha	Rh4AG185700 Rh4BG185000 Rh4CG198300 Rh6AG245100 Rh6CG249100 Rh6DG239900
rosa_wichuraiana	Rw0G001630 Rw4G015880 Rw6G021210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1176
AciI	CCGC	1 cut(s)	118
AclWI	GGATC	3 cut(s)	696, 709, 864
AcoI	YGGCCR	1 cut(s)	919
AcsI	RAATTY	4 cut(s)	250, 310, 420, 721
AfaI	GTAC	1 cut(s)	1038
AfiI	CCNNNNNNNGG	2 cut(s)	928, 968
AgsI	TTSAA	9 cut(s)	151, 325, 514, 566, 586, 713, 797, 843, 1139
AjnI	CCWGG	2 cut(s)	611, 637
AleI	CACNNNNGTG	1 cut(s)	915
AloI	GAACNNNNNNTCC	4 cut(s)	546, 578, 1100, 1132
AluBI	AGCT	4 cut(s)	330, 532, 988, 1130
AluI	AGCT	4 cut(s)	330, 532, 988, 1130
Alw21I	GWGCWC	1 cut(s)	409
Alw26I	GTCTC	2 cut(s)	91, 190
AlwI	GGATC	3 cut(s)	696, 709, 864
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	2 cut(s)	278, 919
ApeKI	GCWGC	3 cut(s)	120, 305, 532
ApoI	RAATTY	4 cut(s)	250, 310, 420, 721
Asp700I	GAANNNNTTC	1 cut(s)	630
AspLEI	GCGC	2 cut(s)	858, 1051
AspS9I	GGNCC	5 cut(s)	262, 278, 650, 782, 849
AsuHPI	GGTGA	2 cut(s)	152, 164
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	4 cut(s)	262, 650, 782, 849
BalI	TGGCCA	1 cut(s)	921
BamHI	GGATCC	1 cut(s)	701
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	3 cut(s)	132, 292, 519
BccI	CCATC	5 cut(s)	529, 971, 989, 1058, 1142
BceAI	ACGGC	1 cut(s)	1070
BciT130I	CCWGG	2 cut(s)	613, 639
BclI	TGATCA	1 cut(s)	877
BcoDI	GTCTC	2 cut(s)	91, 190
BfaI	CTAG	3 cut(s)	111, 243, 1143
BisI	GCNGC	3 cut(s)	121, 306, 533
BlsI	GCNGC	3 cut(s)	122, 307, 534
Bme1390I	CCNGG	2 cut(s)	613, 639
Bme18I	GGWCC	4 cut(s)	262, 650, 782, 849
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	5 cut(s)	262, 278, 650, 782, 849
BmiI	GGNNCC	4 cut(s)	279, 703, 850, 1000
BmrFI	CCNGG	2 cut(s)	613, 639
BmrI	ACTGGG	1 cut(s)	937
BmsI	GCATC	2 cut(s)	569, 1072
BmuI	ACTGGG	1 cut(s)	937
BplI	GAGNNNNNCTC	2 cut(s)	678, 710
BpuEI	CTTGAG	1 cut(s)	1012
BsaBI	GATNNNNATC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	525
BsaXI	ACNNNNNCTCC	2 cut(s)	521, 551
Bsc4I	CCNNNNNNNGG	2 cut(s)	928, 968
Bse1I	ACTGG	3 cut(s)	156, 824, 932
Bse3DI	GCAATG	2 cut(s)	36, 465
Bse8I	GATNNNNATC	1 cut(s)	363
BseBI	CCWGG	2 cut(s)	613, 639
BseDI	CCNNGG	1 cut(s)	525
BseGI	GGATG	2 cut(s)	521, 584
BseJI	GATNNNNATC	1 cut(s)	363
BseLI	CCNNNNNNNGG	2 cut(s)	928, 968
BseMI	GCAATG	2 cut(s)	36, 465
BseMII	CTCAG	3 cut(s)	823, 915, 981
BseNI	ACTGG	3 cut(s)	156, 824, 932
BseRI	GAGGAG	2 cut(s)	542, 1112
BseXI	GCAGC	3 cut(s)	132, 292, 519
BshFI	GGCC	2 cut(s)	280, 921
BsiHKAI	GWGCWC	1 cut(s)	409
BsiHKCI	CYCGRG	1 cut(s)	272
BslFI	GGGAC	2 cut(s)	862, 1082
BslI	CCNNNNNNNGG	2 cut(s)	928, 968
BsmAI	GTCTC	2 cut(s)	91, 190
BsmFI	GGGAC	2 cut(s)	862, 1082
BsnI	GGCC	2 cut(s)	280, 921
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp143I	GATC	6 cut(s)	91, 364, 701, 869, 877, 949
BspACI	CCGC	1 cut(s)	118
BspANI	GGCC	2 cut(s)	280, 921
BspCNI	CTCAG	3 cut(s)	822, 914, 980
BspLI	GGNNCC	4 cut(s)	279, 703, 850, 1000
BspPI	GGATC	3 cut(s)	696, 709, 864
BsrDI	GCAATG	2 cut(s)	36, 465
BsrI	ACTGG	3 cut(s)	156, 824, 932
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	6 cut(s)	91, 364, 701, 869, 877, 949
Bst2UI	CCWGG	2 cut(s)	613, 639
Bst4CI	ACNGT	2 cut(s)	266, 917
Bst6I	CTCTTC	3 cut(s)	147, 152, 581
BstDEI	CTNAG	4 cut(s)	809, 901, 967, 989
BstF5I	GGATG	2 cut(s)	521, 584
BstHHI	GCGC	2 cut(s)	858, 1051
BstKTI	GATC	6 cut(s)	94, 367, 704, 872, 880, 952
BstMAI	GTCTC	2 cut(s)	91, 190
BstMBI	GATC	6 cut(s)	91, 364, 701, 869, 877, 949
BstMWI	GCNNNNNNNGC	1 cut(s)	673
BstNI	CCWGG	2 cut(s)	613, 639
BstNSI	RCATGY	1 cut(s)	1199
BstSCI	CCNGG	2 cut(s)	611, 637
BstV1I	GCAGC	3 cut(s)	132, 292, 519
BstX2I	RGATCY	1 cut(s)	701
BstXI	CCANNNNNNTGG	1 cut(s)	917
BstYI	RGATCY	1 cut(s)	701
BsuRI	GGCC	2 cut(s)	280, 921
BtsCI	GGATG	2 cut(s)	521, 584
BtsIMutI	CAGTG	2 cut(s)	33, 817
CfoI	GCGC	2 cut(s)	858, 1051
Cfr13I	GGNCC	5 cut(s)	262, 278, 650, 782, 849
Csp6I	GTAC	1 cut(s)	1037
CviAII	CATG	6 cut(s)	76, 182, 335, 735, 1074, 1196
CviQI	GTAC	1 cut(s)	1037
DdeI	CTNAG	4 cut(s)	809, 901, 967, 989
DpnI	GATC	6 cut(s)	93, 366, 703, 871, 879, 951
DpnII	GATC	6 cut(s)	91, 364, 701, 869, 877, 949
EaeI	YGGCCR	1 cut(s)	919
Eam1104I	CTCTTC	3 cut(s)	147, 152, 581
EarI	CTCTTC	3 cut(s)	147, 152, 581
Eco47I	GGWCC	4 cut(s)	262, 650, 782, 849
Eco88I	CYCGRG	1 cut(s)	272
EcoO109I	RGGNCCY	2 cut(s)	278, 849
EcoRI	GAATTC	1 cut(s)	721
EcoRII	CCWGG	2 cut(s)	611, 637
FaeI	CATG	6 cut(s)	79, 185, 338, 738, 1077, 1199
FaqI	GGGAC	2 cut(s)	862, 1082
FatI	CATG	6 cut(s)	75, 181, 334, 734, 1073, 1195
FbaI	TGATCA	1 cut(s)	877
Fnu4HI	GCNGC	3 cut(s)	121, 306, 533
FokI	GGATG	2 cut(s)	508, 591
Fsp4HI	GCNGC	3 cut(s)	121, 306, 533
FspBI	CTAG	3 cut(s)	111, 243, 1143
GlaI	GCGC	2 cut(s)	857, 1050
GluI	GCNGC	3 cut(s)	121, 306, 533
HaeIII	GGCC	2 cut(s)	280, 921
HhaI	GCGC	2 cut(s)	858, 1051
Hin1II	CATG	6 cut(s)	79, 185, 338, 738, 1077, 1199
Hin6I	GCGC	2 cut(s)	856, 1049
HinP1I	GCGC	2 cut(s)	856, 1049
HinfI	GANTC	6 cut(s)	114, 499, 755, 817, 905, 1070
HphI	GGTGA	2 cut(s)	152, 164
Hpy166II	GTNNAC	2 cut(s)	1037, 1159
Hpy188I	TCNGA	7 cut(s)	91, 197, 400, 526, 598, 904, 1057
Hpy188III	TCNNGA	2 cut(s)	111, 272
Hpy8I	GTNNAC	2 cut(s)	1037, 1159
Hpy99I	CGWCG	1 cut(s)	917
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	2 cut(s)	266, 917
HpyCH4V	TGCA	6 cut(s)	97, 218, 308, 430, 938, 1013
HpyF10VI	GCNNNNNNNGC	1 cut(s)	673
HpyF3I	CTNAG	4 cut(s)	809, 901, 967, 989
Hsp92II	CATG	6 cut(s)	79, 185, 338, 738, 1077, 1199
HspAI	GCGC	2 cut(s)	856, 1049
Ksp22I	TGATCA	1 cut(s)	877
Kzo9I	GATC	6 cut(s)	91, 364, 701, 869, 877, 949
LmnI	GCTCC	4 cut(s)	241, 404, 529, 1004
Lsp1109I	GCAGC	3 cut(s)	132, 292, 519
LweI	GCATC	2 cut(s)	569, 1072
MaeI	CTAG	3 cut(s)	111, 243, 1143
MaeIII	GTNAC	4 cut(s)	158, 285, 607, 1087
MalI	GATC	6 cut(s)	93, 366, 703, 871, 879, 951
MboI	GATC	6 cut(s)	91, 364, 701, 869, 877, 949
MboII	GAAGA	4 cut(s)	16, 134, 139, 598
MflI	RGATCY	1 cut(s)	701
MhlI	GDGCHC	1 cut(s)	409
MlsI	TGGCCA	1 cut(s)	921
MluCI	AATT	7 cut(s)	124, 151, 250, 310, 420, 721, 1213
MluNI	TGGCCA	1 cut(s)	921
MlyI	GAGTC	1 cut(s)	1064
MmeI	TCCRAC	2 cut(s)	183, 698
Mox20I	TGGCCA	1 cut(s)	921
MroXI	GAANNNNTTC	1 cut(s)	630
MscI	TGGCCA	1 cut(s)	921
MseI	TTAA	5 cut(s)	227, 863, 1041, 1191, 1206
MslI	CAYNNNNRTG	1 cut(s)	915
Msp20I	TGGCCA	1 cut(s)	921
MspA1I	CMGCKG	1 cut(s)	1130
MspR9I	CCNGG	2 cut(s)	613, 639
MvaI	CCWGG	2 cut(s)	613, 639
MwoI	GCNNNNNNNGC	1 cut(s)	673
NdeII	GATC	6 cut(s)	91, 364, 701, 869, 877, 949
NlaIII	CATG	6 cut(s)	79, 185, 338, 738, 1077, 1199
NlaIV	GGNNCC	4 cut(s)	279, 703, 850, 1000
NmuCI	GTSAC	2 cut(s)	158, 1087
NspI	RCATGY	1 cut(s)	1199
OliI	CACNNNNGTG	1 cut(s)	915
PaeR7I	CTCGAG	1 cut(s)	272
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	5 cut(s)	114, 499, 755, 817, 905
PkrI	GCNGC	3 cut(s)	122, 307, 534
PleI	GAGTC	1 cut(s)	1064
PpsI	GAGTC	1 cut(s)	1064
PpuMI	RGGWCCY	1 cut(s)	849
PsiI	TTATAA	1 cut(s)	1176
Psp5II	RGGWCCY	1 cut(s)	849
Psp6I	CCWGG	2 cut(s)	611, 637
PspGI	CCWGG	2 cut(s)	611, 637
PspN4I	GGNNCC	4 cut(s)	279, 703, 850, 1000
PspPI	GGNCC	5 cut(s)	262, 278, 650, 782, 849
PspPPI	RGGWCCY	1 cut(s)	849
PsuI	RGATCY	1 cut(s)	701
PvuII	CAGCTG	1 cut(s)	1130
RsaI	GTAC	1 cut(s)	1038
RsaNI	GTAC	1 cut(s)	1037
RseI	CAYNNNNRTG	1 cut(s)	915
SaqAI	TTAA	5 cut(s)	227, 863, 1041, 1191, 1206
SatI	GCNGC	3 cut(s)	121, 306, 533
Sau3AI	GATC	6 cut(s)	91, 364, 701, 869, 877, 949
Sau96I	GGNCC	5 cut(s)	262, 278, 650, 782, 849
SchI	GAGTC	1 cut(s)	1064
ScrFI	CCNGG	2 cut(s)	613, 639
SduI	GDGCHC	1 cut(s)	409
SfaNI	GCATC	2 cut(s)	569, 1072
Sfr274I	CTCGAG	1 cut(s)	272
SinI	GGWCC	4 cut(s)	262, 650, 782, 849
SlaI	CTCGAG	1 cut(s)	272
SmiMI	CAYNNNNRTG	1 cut(s)	915
SmlI	CTYRAG	2 cut(s)	272, 1027
SmoI	CTYRAG	2 cut(s)	272, 1027
Sse9I	AATT	7 cut(s)	124, 151, 250, 310, 420, 721, 1213
SsiI	CCGC	1 cut(s)	118
SspI	AATATT	1 cut(s)	213
SspMI	CTAG	3 cut(s)	111, 243, 1143
StyD4I	CCNGG	2 cut(s)	611, 637
TaaI	ACNGT	2 cut(s)	266, 917
TaqI	TCGA	1 cut(s)	273
TasI	AATT	7 cut(s)	124, 151, 250, 310, 420, 721, 1213
TatI	WGTACW	1 cut(s)	1036
TfiI	GAWTC	5 cut(s)	114, 499, 755, 817, 905
Tru1I	TTAA	5 cut(s)	227, 863, 1041, 1191, 1206
Tru9I	TTAA	5 cut(s)	227, 863, 1041, 1191, 1206
TscAI	CASTG	2 cut(s)	33, 817
TseFI	GTSAC	2 cut(s)	158, 1087
TseI	GCWGC	3 cut(s)	120, 305, 532
Tsp45I	GTSAC	2 cut(s)	158, 1087
TspDTI	ATGAA	4 cut(s)	17, 170, 489, 816
TspGWI	ACGGA	1 cut(s)	767
TspRI	CASTG	2 cut(s)	33, 817
VpaK11BI	GGWCC	4 cut(s)	262, 650, 782, 849
XapI	RAATTY	4 cut(s)	250, 310, 420, 721
XbaI	TCTAGA	1 cut(s)	110
XceI	RCATGY	1 cut(s)	1199
XhoI	CTCGAG	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	630
XspI	CTAG	3 cut(s)	111, 243, 1143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.