Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004808

Physical Location & Seq

Genomic Coordinates Forward (+)

25346854 .. 25349851

Gene Structure 2998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013048

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGACACTCCTCATTTTCCAATTACAACCCAACCTCAAGCTCTAATTTCTCTCTGCAAAACCCTAACCACACTCCCCACTCCACCCCACCCTTTCCCCCTCAGAGCTTCTCCAGCAACCCGAACGACCGACCAGCCGAACCTCTCGAATTCGGCTAGGCATTTGCCTGAGGACCCGAGAAAGGTGCTCGAGAAGATCGACCGTGCGGTGGAGAAGCTTCGCGACGAGCTTGTCGCCGCCGGAAAGAACGTCTCGGCCTGGAAGGCCTTACAGTCTGCTCTTCTGATGCTCAAAGTTGACGCTGAGACTTGTTTGGGCCTCAAAATTGAGCAAGTGCCGTCCCTTCACCGCCTCATGGTCACTGAAGGAAGGATAAAAGCATTTATCCATTGCTTTGTCGAGGTTCGAACAATTACATCTTTGTATGATTTGGAAGTTGCAATCTGCAAGAATGAGGATATTGAGCAGTTTGACGAGCTTGAATTGGGTCCTTTGGAAGAAGAAGAAGAGGAAGAAGAAAAAGAGAGACAGAGACAGAAGGCTCTGGTGCTTAGCCACAGTCTCACAGTGATAAAGAGAGAAATTGCGTCTCGGCTGCAGAAGATCGAAACGGACGAATCGGTACTACTGCGAGTGACGCATTCCAACCTCAAGACCTTCTCCGCTGAAATTCGGTTCTCCCTGCAGAGCACCGTGAAAGACAAGCTATGGCGCAAATGCGTCACTTCTGTAAATTCCATGTCTCTTCATCTCTACGACAATGCCAACACCAAAGTCGCCGATCTCGCCGACAATTCCAGACCCCTCGGCTTCTATTCCCCTCTCGACGGGTTCCGGCTACATATTATAGACCTGGACCCGTCGTCGGTGACCTCCGGCGGGTGGCTGGAGGACACGTCGTTGGTGGAGAAGTACACGATTTCCCAGGAAACTTATGAGAAACGCGATGGCACTTTTAAAAAGTTTAAGGACAAATTGGCATCTCAGAATACATCAGCTGTTGATAATAACATACCAAACAACTACATGGAAGACCTCTGTGTAAATATTAAGGTAGGAGATAGATGTCAAGTTGAACCAGGGGACAAAAGAGGTGTTGTTAAATTTGTCGGCCGAGCAGAATCTCTGGCTCCTGGTTTCTGGATTGGAGTTCAGTATGATGAACCATTGGGAAAGCACGATGGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009524 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP_GLY Ubiquitin_2

Protein Analysis

397

Amino Acids

44.66

Weight (kDa)

5.69

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_2	PF14560	208 - 289	6.6e-23	Ubiquitin-like domain
CAP_GLY	PF01302	352 - 395	7.3e-12	CAP-Gly domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10220
fragaria_vesca	FvH4_4g13730
malus_domestica	MD04G1012500.v1.1
prunus_persica	Prupe.1G158700_v2.0.a1 Prupe.1G158700_v2.0.a1 Prupe.1G158700_v2.0.a1 Prupe.7G257800_v2.0.a1
pyrus_communis	pycom04g01000
rosa_chinensis	RchiOBHm_Chr4g0414381 RchiOBHm_Chr6g0280571
rosa_laevigata	RLG00000008151 RLG00000013048 RLG00000013049 RLG00000013783
rosa_multiflora	Rmu_sc0001432.1_g000007 Rmu_sc0016990.1_g000001 Rmu_sc0029306.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358240 Rroxscaffold_7G00187940
rosa_rugosa	Rorug04G0127600 Rorug04G0127700 Rorug04G0127800
rosa_samantha	Rh4AG185700 Rh4BG185000 Rh4CG198300 Rh6AG245100 Rh6CG249100 Rh6DG239900
rosa_wichuraiana	Rw0G001630 Rw4G015880 Rw6G021210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AccII	CGCG	2 cut(s)	222, 945
AciI	CCGC	5 cut(s)	206, 237, 349, 663, 879
AcoI	YGGCCR	1 cut(s)	1111
AcsI	RAATTY	4 cut(s)	148, 669, 733, 1103
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	2 cut(s)	624, 914
AfiI	CCNNNNNNNGG	7 cut(s)	181, 208, 355, 827, 865, 879, 882
AflIII	ACRYGT	1 cut(s)	894
AgsI	TTSAA	2 cut(s)	482, 1076
AhdI	GACNNNNNGTC	1 cut(s)	862
AjiI	CACGTC	1 cut(s)	897
AjnI	CCWGG	5 cut(s)	257, 852, 924, 1078, 1132
AluBI	AGCT	7 cut(s)	41, 107, 217, 229, 478, 706, 998
AluI	AGCT	7 cut(s)	41, 107, 217, 229, 478, 706, 998
Alw21I	GWGCWC	2 cut(s)	189, 692
Alw26I	GTCTC	7 cut(s)	256, 299, 520, 526, 566, 594, 747
Ama87I	CYCGRG	2 cut(s)	175, 188
AoxI	GGCC	4 cut(s)	255, 264, 316, 1111
ApeKI	GCWGC	1 cut(s)	595
ApoI	RAATTY	4 cut(s)	148, 669, 733, 1103
AspLEI	GCGC	1 cut(s)	714
AspS9I	GGNCC	4 cut(s)	172, 316, 488, 856
AsuHPI	GGTGA	2 cut(s)	338, 880
AsuII	TTCGAA	1 cut(s)	406
AvaI	CYCGRG	2 cut(s)	175, 188
AvaII	GGWCC	3 cut(s)	172, 488, 856
AxyI	CCTNAGG	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	1038
Bbv12I	GWGCWC	2 cut(s)	189, 692
BbvI	GCAGC	1 cut(s)	582
BccI	CCATC	2 cut(s)	941, 1175
BceAI	ACGGC	1 cut(s)	322
BcgI	CGANNNNNNTGC	2 cut(s)	166, 200
BciT130I	CCWGG	5 cut(s)	259, 854, 926, 1080, 1134
BcoDI	GTCTC	7 cut(s)	256, 299, 520, 526, 566, 594, 747
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	2 cut(s)	596, 683
BglI	GCCNNNNNGGC	1 cut(s)	263
BisI	GCNGC	2 cut(s)	237, 596
BlpI	GCTNAGC	1 cut(s)	551
BlsI	GCNGC	2 cut(s)	238, 597
Bme1390I	CCNGG	5 cut(s)	259, 854, 926, 1080, 1134
Bme18I	GGWCC	3 cut(s)	172, 488, 856
BmeRI	GACNNNNNGTC	1 cut(s)	862
BmeT110I	CYCGRG	2 cut(s)	175, 188
BmgBI	CACGTC	1 cut(s)	897
BmgT120I	GGNCC	4 cut(s)	172, 316, 488, 856
BmiI	GGNNCC	5 cut(s)	174, 489, 833, 858, 1131
BmrFI	CCNGG	5 cut(s)	259, 854, 926, 1080, 1134
BmsI	GCATC	2 cut(s)	276, 989
BpiI	GAAGAC	1 cut(s)	1038
BpmI	CTGGAG	2 cut(s)	96, 908
Bpu1102I	GCTNAGC	1 cut(s)	551
Bpu14I	TTCGAA	1 cut(s)	406
BpuEI	CTTGAG	2 cut(s)	21, 635
BsaJI	CCNNGG	3 cut(s)	805, 924, 1079
BsaXI	ACNNNNNCTCC	2 cut(s)	881, 911
Bsc4I	CCNNNNNNNGG	7 cut(s)	181, 208, 355, 827, 865, 879, 882
Bse21I	CCTNAGG	1 cut(s)	168
Bse3DI	GCAATG	1 cut(s)	388
BseBI	CCWGG	5 cut(s)	259, 854, 926, 1080, 1134
BseDI	CCNNGG	3 cut(s)	805, 924, 1079
BseLI	CCNNNNNNNGG	7 cut(s)	181, 208, 355, 827, 865, 879, 882
BseMI	GCAATG	1 cut(s)	388
BseMII	CTCAG	4 cut(s)	115, 159, 294, 998
BseX3I	CGGCCG	1 cut(s)	1111
BseXI	GCAGC	1 cut(s)	582
Bsh1236I	CGCG	2 cut(s)	222, 945
Bsh1285I	CGRYCG	3 cut(s)	129, 202, 1114
BshFI	GGCC	4 cut(s)	257, 266, 318, 1113
BsiEI	CGRYCG	3 cut(s)	129, 202, 1114
BsiHKAI	GWGCWC	2 cut(s)	189, 692
BsiHKCI	CYCGRG	2 cut(s)	175, 188
BsiSI	CCGG	3 cut(s)	240, 835, 876
BslFI	GGGAC	2 cut(s)	325, 1097
BslI	CCNNNNNNNGG	7 cut(s)	181, 208, 355, 827, 865, 879, 882
BsmAI	GTCTC	7 cut(s)	256, 299, 520, 526, 566, 594, 747
BsmBI	CGTCTC	2 cut(s)	256, 594
BsmFI	GGGAC	2 cut(s)	325, 1097
BsmI	GAATGC	1 cut(s)	640
BsnI	GGCC	4 cut(s)	257, 266, 318, 1113
BsoBI	CYCGRG	2 cut(s)	175, 188
Bsp119I	TTCGAA	1 cut(s)	406
Bsp1286I	GDGCHC	2 cut(s)	189, 692
Bsp143I	GATC	3 cut(s)	195, 603, 781
Bsp1720I	GCTNAGC	1 cut(s)	551
Bsp68I	TCGCGA	1 cut(s)	222
BspACI	CCGC	5 cut(s)	206, 237, 349, 663, 879
BspANI	GGCC	4 cut(s)	257, 266, 318, 1113
BspCNI	CTCAG	4 cut(s)	114, 160, 295, 997
BspFNI	CGCG	2 cut(s)	222, 945
BspLI	GGNNCC	5 cut(s)	174, 489, 833, 858, 1131
BspMAI	CTGCAG	2 cut(s)	600, 687
BspQI	GCTCTTC	1 cut(s)	285
BspT104I	TTCGAA	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	388
BssECI	CCNNGG	3 cut(s)	805, 924, 1079
BssMI	GATC	3 cut(s)	195, 603, 781
Bst2UI	CCWGG	5 cut(s)	259, 854, 926, 1080, 1134
Bst4CI	ACNGT	5 cut(s)	203, 273, 560, 568, 694
Bst6I	CTCTTC	3 cut(s)	285, 501, 750
BstBI	TTCGAA	1 cut(s)	406
BstDEI	CTNAG	5 cut(s)	101, 168, 303, 551, 984
BstEII	GGTNACC	1 cut(s)	868
BstFNI	CGCG	2 cut(s)	222, 945
BstHHI	GCGC	1 cut(s)	714
BstKTI	GATC	3 cut(s)	198, 606, 784
BstMAI	GTCTC	7 cut(s)	256, 299, 520, 526, 566, 594, 747
BstMBI	GATC	3 cut(s)	195, 603, 781
BstMCI	CGRYCG	3 cut(s)	129, 202, 1114
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 263, 637, 785
BstNI	CCWGG	5 cut(s)	259, 854, 926, 1080, 1134
BstNSI	RCATGY	1 cut(s)	1189
BstPI	GGTNACC	1 cut(s)	868
BstSCI	CCNGG	5 cut(s)	257, 852, 924, 1078, 1132
BstSFI	CTRYAG	2 cut(s)	596, 683
BstUI	CGCG	2 cut(s)	222, 945
BstV1I	GCAGC	1 cut(s)	582
BstV2I	GAAGAC	1 cut(s)	1038
BstZI	CGGCCG	1 cut(s)	1111
Bsu36I	CCTNAGG	1 cut(s)	168
BsuRI	GGCC	4 cut(s)	257, 266, 318, 1113
BtgZI	GCGATG	1 cut(s)	960
BtrI	CACGTC	1 cut(s)	897
BtsIMutI	CAGTG	2 cut(s)	360, 573
BtuMI	TCGCGA	1 cut(s)	222
CfoI	GCGC	1 cut(s)	714
Cfr13I	GGNCC	4 cut(s)	172, 316, 488, 856
CseI	GACGC	4 cut(s)	308, 576, 646, 709
Csp6I	GTAC	2 cut(s)	623, 913
CviAII	CATG	4 cut(s)	355, 739, 1027, 1186
CviQI	GTAC	2 cut(s)	623, 913
DdeI	CTNAG	5 cut(s)	101, 168, 303, 551, 984
DpnI	GATC	3 cut(s)	197, 605, 783
DpnII	GATC	3 cut(s)	195, 603, 781
DraI	TTTAAA	1 cut(s)	958
DrdI	GACNNNNNNGTC	1 cut(s)	230
DriI	GACNNNNNGTC	1 cut(s)	862
DseDI	GACNNNNNNGTC	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	1111
EagI	CGGCCG	1 cut(s)	1111
Eam1104I	CTCTTC	3 cut(s)	285, 501, 750
Eam1105I	GACNNNNNGTC	1 cut(s)	862
EarI	CTCTTC	3 cut(s)	285, 501, 750
EclXI	CGGCCG	1 cut(s)	1111
Eco147I	AGGCCT	1 cut(s)	266
Eco47I	GGWCC	3 cut(s)	172, 488, 856
Eco52I	CGGCCG	1 cut(s)	1111
Eco57I	CTGAAG	1 cut(s)	384
Eco81I	CCTNAGG	1 cut(s)	168
Eco88I	CYCGRG	2 cut(s)	175, 188
Eco91I	GGTNACC	1 cut(s)	868
EcoO109I	RGGNCCY	2 cut(s)	172, 488
EcoO65I	GGTNACC	1 cut(s)	868
EcoRI	GAATTC	1 cut(s)	148
EcoRII	CCWGG	5 cut(s)	257, 852, 924, 1078, 1132
Esp3I	CGTCTC	2 cut(s)	256, 594
FaeI	CATG	4 cut(s)	358, 742, 1030, 1189
FaqI	GGGAC	2 cut(s)	325, 1097
FatI	CATG	4 cut(s)	354, 738, 1026, 1185
FauI	CCCGC	1 cut(s)	872
Fnu4HI	GCNGC	2 cut(s)	237, 596
Fsp4HI	GCNGC	2 cut(s)	237, 596
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	1 cut(s)	713
GluI	GCNGC	2 cut(s)	237, 596
GsuI	CTGGAG	2 cut(s)	96, 908
HaeIII	GGCC	4 cut(s)	257, 266, 318, 1113
HapII	CCGG	3 cut(s)	240, 835, 876
HgaI	GACGC	4 cut(s)	308, 576, 646, 709
HhaI	GCGC	1 cut(s)	714
Hin1II	CATG	4 cut(s)	358, 742, 1030, 1189
Hin6I	GCGC	1 cut(s)	712
HinP1I	GCGC	1 cut(s)	712
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	2 cut(s)	617, 1121
HpaII	CCGG	3 cut(s)	240, 835, 876
HphI	GGTGA	2 cut(s)	338, 880
Hpy166II	GTNNAC	2 cut(s)	298, 915
Hpy188I	TCNGA	3 cut(s)	104, 285, 987
Hpy188III	TCNNGA	7 cut(s)	145, 190, 221, 652, 798, 824, 1141
Hpy8I	GTNNAC	2 cut(s)	298, 915
Hpy99I	CGWCG	5 cut(s)	227, 830, 865, 868, 901
HpyAV	CCTTC	6 cut(s)	256, 353, 359, 363, 532, 667
HpyCH4III	ACNGT	5 cut(s)	203, 273, 560, 568, 694
HpyCH4IV	ACGT	2 cut(s)	249, 896
HpyCH4V	TGCA	5 cut(s)	57, 440, 447, 598, 685
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 263, 637, 785
HpyF3I	CTNAG	5 cut(s)	101, 168, 303, 551, 984
HpySE526I	ACGT	2 cut(s)	249, 896
Hsp92II	CATG	4 cut(s)	358, 742, 1030, 1189
HspAI	GCGC	1 cut(s)	712
Kzo9I	GATC	3 cut(s)	195, 603, 781
LguI	GCTCTTC	1 cut(s)	285
LmnI	GCTCC	1 cut(s)	1135
Lsp1109I	GCAGC	1 cut(s)	582
LweI	GCATC	2 cut(s)	276, 989
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	2 cut(s)	249, 896
MaeIII	GTNAC	4 cut(s)	358, 634, 721, 868
MalI	GATC	3 cut(s)	197, 605, 783
MboI	GATC	3 cut(s)	195, 603, 781
MhlI	GDGCHC	2 cut(s)	189, 692
MmeI	TCCRAC	1 cut(s)	669
MseI	TTAA	4 cut(s)	957, 966, 1050, 1101
MspA1I	CMGCKG	2 cut(s)	665, 998
MspI	CCGG	3 cut(s)	240, 835, 876
MspR9I	CCNGG	5 cut(s)	259, 854, 926, 1080, 1134
Mva1269I	GAATGC	1 cut(s)	640
MvaI	CCWGG	5 cut(s)	259, 854, 926, 1080, 1134
MvnI	CGCG	2 cut(s)	222, 945
MwoI	GCNNNNNNNGC	4 cut(s)	113, 263, 637, 785
NdeII	GATC	3 cut(s)	195, 603, 781
NlaIII	CATG	4 cut(s)	358, 742, 1030, 1189
NlaIV	GGNNCC	5 cut(s)	174, 489, 833, 858, 1131
NmeAIII	GCCGAG	4 cut(s)	233, 571, 786, 1139
NmuCI	GTSAC	4 cut(s)	358, 634, 721, 868
NruI	TCGCGA	1 cut(s)	222
NspI	RCATGY	1 cut(s)	1189
NspV	TTCGAA	1 cut(s)	406
PaeR7I	CTCGAG	1 cut(s)	188
PceI	AGGCCT	1 cut(s)	266
PciSI	GCTCTTC	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 612
PctI	GAATGC	1 cut(s)	640
PfeI	GAWTC	2 cut(s)	617, 1121
PkrI	GCNGC	2 cut(s)	238, 597
PpuMI	RGGWCCY	2 cut(s)	172, 488
Psp5II	RGGWCCY	2 cut(s)	172, 488
Psp6I	CCWGG	5 cut(s)	257, 852, 924, 1078, 1132
PspEI	GGTNACC	1 cut(s)	868
PspGI	CCWGG	5 cut(s)	257, 852, 924, 1078, 1132
PspN4I	GGNNCC	5 cut(s)	174, 489, 833, 858, 1131
PspPI	GGNCC	4 cut(s)	172, 316, 488, 856
PspPPI	RGGWCCY	2 cut(s)	172, 488
PstI	CTGCAG	2 cut(s)	600, 687
PvuII	CAGCTG	1 cut(s)	998
RruI	TCGCGA	1 cut(s)	222
RsaI	GTAC	2 cut(s)	624, 914
RsaNI	GTAC	2 cut(s)	623, 913
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	4 cut(s)	957, 966, 1050, 1101
SatI	GCNGC	2 cut(s)	237, 596
Sau3AI	GATC	3 cut(s)	195, 603, 781
Sau96I	GGNCC	4 cut(s)	172, 316, 488, 856
ScrFI	CCNGG	5 cut(s)	259, 854, 926, 1080, 1134
SduI	GDGCHC	2 cut(s)	189, 692
SfaNI	GCATC	2 cut(s)	276, 989
SfcI	CTRYAG	2 cut(s)	596, 683
SfiI	GGCCNNNNNGGCC	1 cut(s)	263
Sfr274I	CTCGAG	1 cut(s)	188
SfuI	TTCGAA	1 cut(s)	406
SinI	GGWCC	3 cut(s)	172, 488, 856
SlaI	CTCGAG	1 cut(s)	188
SmlI	CTYRAG	3 cut(s)	36, 188, 650
SmoI	CTYRAG	3 cut(s)	36, 188, 650
SseBI	AGGCCT	1 cut(s)	266
SsiI	CCGC	5 cut(s)	206, 237, 349, 663, 879
SspI	AATATT	1 cut(s)	1048
SspMI	CTAG	1 cut(s)	156
StuI	AGGCCT	1 cut(s)	266
StyD4I	CCNGG	5 cut(s)	257, 852, 924, 1078, 1132
TaaI	ACNGT	5 cut(s)	203, 273, 560, 568, 694
TaiI	ACGT	2 cut(s)	252, 899
TaqI	TCGA	7 cut(s)	146, 189, 198, 399, 406, 606, 825
TaqII	GACCGA	1 cut(s)	143
TatI	WGTACW	1 cut(s)	912
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	2 cut(s)	617, 1121
Tru1I	TTAA	4 cut(s)	957, 966, 1050, 1101
Tru9I	TTAA	4 cut(s)	957, 966, 1050, 1101
TscAI	CASTG	2 cut(s)	367, 573
TseFI	GTSAC	4 cut(s)	358, 634, 721, 868
TseI	GCWGC	1 cut(s)	595
Tsp45I	GTSAC	4 cut(s)	358, 634, 721, 868
TspDTI	ATGAA	2 cut(s)	737, 1176
TspGWI	ACGGA	1 cut(s)	626
TspRI	CASTG	2 cut(s)	367, 573
VpaK11BI	GGWCC	3 cut(s)	172, 488, 856
XapI	RAATTY	4 cut(s)	148, 669, 733, 1103
XceI	RCATGY	1 cut(s)	1189
XhoI	CTCGAG	1 cut(s)	188
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.