Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004808

Physical Location & Seq

Genomic Coordinates Forward (+)

21544859 .. 21548402

Gene Structure 3544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G257800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCGTCTCGGTTGCAGAAGATCGAAGGAGACGAGTCCGTACTGTTGCGCGTAACTCATTCGAACCTCAAGACCTTCTCTGCCGACATCCGCTTCTCCCTACAGAGCTCCGTGGAGTACGTCAAGGACAAGCTATGGCGTAAATGCGGCACTTCTGTAGATTCCATGTCGATCCACCTGTATGACGACGCCAACACCCAAGTCTCCGTTTTGAACGACAACTCCAAGCCCCTCGGCTTCTATTCACCGCACGACGGCTACCGGCTACATGTTATAGATCTTGACCCTTCATCGGTGACCTCCGGTGGGTGGCTTGAGGACACATCGTTGGTGGAGAAGTACACTATTTCCCAAGAAGCTTATGAGAAACGAGATGGGACTTTTAGAAAATTTAAAGACAAATTGGCATCTCAGAACCCGTCAGCTTTTGAGAATAAAATACCAGAGAACAATATGGAAGATCTCTGTGTAAATATCAAGGTTGGAGATAGATGTGAGGTTCAACCAGGGGATAAAAGAGGTGTTGTTAAATTTGTTGGTCGGGCAGAATCTCTGGCTCCTGGTTTCTGGATTGGAGTTCAATATGATGAACCATTGGGAAAGCATGATGGCATGGTGAAAGGAACAAGATATTTCAATTGCCTCCCACTTCATGGTGGAATTGTTCGGCCAGACAAAGTAAAGGTTGGTGACTACCCTGAACGAGATCCATTCGAGGAGGATGAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009524 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP_GLY Ubiquitin_2

Protein Analysis

244

Amino Acids

27.43

Weight (kDa)

5.45

Isoelectric Point (pI)

38.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10220
fragaria_vesca	FvH4_4g13730
malus_domestica	MD04G1012500.v1.1
prunus_persica	Prupe.1G158700_v2.0.a1 Prupe.1G158700_v2.0.a1 Prupe.1G158700_v2.0.a1 Prupe.7G257800_v2.0.a1
pyrus_communis	pycom04g01000
rosa_chinensis	RchiOBHm_Chr4g0414381 RchiOBHm_Chr6g0280571
rosa_laevigata	RLG00000008151 RLG00000013048 RLG00000013049 RLG00000013783
rosa_multiflora	Rmu_sc0001432.1_g000007 Rmu_sc0016990.1_g000001 Rmu_sc0029306.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358240 Rroxscaffold_7G00187940
rosa_rugosa	Rorug04G0127600 Rorug04G0127700 Rorug04G0127800
rosa_samantha	Rh4AG185700 Rh4BG185000 Rh4CG198300 Rh6AG245100 Rh6CG249100 Rh6DG239900
rosa_wichuraiana	Rw0G001630 Rw4G015880 Rw6G021210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	653
AccII	CGCG	1 cut(s)	51
AciI	CCGC	3 cut(s)	91, 147, 248
AclWI	GGATC	2 cut(s)	166, 701
AcoI	YGGCCR	1 cut(s)	668
AcsI	RAATTY	2 cut(s)	389, 530
AcyI	GRCGYC	2 cut(s)	5, 189
AfaI	GTAC	3 cut(s)	42, 119, 341
AfiI	CCNNNNNNNGG	5 cut(s)	254, 292, 306, 309, 653
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	4 cut(s)	214, 503, 581, 637
AjnI	CCWGG	2 cut(s)	505, 559
AloI	GAACNNNNNNTCC	2 cut(s)	206, 238
AluBI	AGCT	4 cut(s)	108, 133, 359, 425
AluI	AGCT	4 cut(s)	108, 133, 359, 425
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	3 cut(s)	12, 24, 208
AlwI	GGATC	2 cut(s)	166, 701
AoxI	GGCC	1 cut(s)	668
ApoI	RAATTY	2 cut(s)	389, 530
AspLEI	GCGC	1 cut(s)	51
AsuHPI	GGTGA	4 cut(s)	237, 307, 628, 701
AsuII	TTCGAA	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	110
BccI	CCATC	2 cut(s)	368, 602
BceAI	ACGGC	1 cut(s)	271
BciT130I	CCWGG	2 cut(s)	507, 561
BcoDI	GTCTC	3 cut(s)	12, 24, 208
BfmI	CTRYAG	2 cut(s)	101, 156
BglII	AGATCT	2 cut(s)	277, 460
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
Bme1390I	CCNGG	2 cut(s)	507, 561
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	2 cut(s)	507, 561
BmsI	GCATC	1 cut(s)	416
Bpu14I	TTCGAA	1 cut(s)	62
BpuEI	CTTGAG	2 cut(s)	53, 335
BsaHI	GRCGYC	2 cut(s)	5, 189
BsaJI	CCNNGG	3 cut(s)	111, 232, 506
BsaWI	WCCGGW	1 cut(s)	302
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	5 cut(s)	254, 292, 306, 309, 653
Bse118I	RCCGGY	1 cut(s)	261
BseBI	CCWGG	2 cut(s)	507, 561
BseDI	CCNNGG	3 cut(s)	111, 232, 506
BseGI	GGATG	2 cut(s)	87, 727
BseLI	CCNNNNNNNGG	5 cut(s)	254, 292, 306, 309, 653
BseMII	CTCAG	1 cut(s)	425
BseRI	GAGGAG	1 cut(s)	731
Bsh1236I	CGCG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	670
BsiHKAI	GWGCWC	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	262, 303
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	5 cut(s)	254, 292, 306, 309, 653
BsmAI	GTCTC	3 cut(s)	12, 24, 208
BsmBI	CGTCTC	2 cut(s)	12, 24
BsmFI	GGGAC	1 cut(s)	391
BsnI	GGCC	1 cut(s)	670
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	5 cut(s)	21, 171, 277, 460, 706
BspACI	CCGC	3 cut(s)	91, 147, 248
BspANI	GGCC	1 cut(s)	670
BspCNI	CTCAG	1 cut(s)	424
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	558
BspPI	GGATC	2 cut(s)	166, 701
BspT104I	TTCGAA	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	261
BssAI	RCCGGY	1 cut(s)	261
BssECI	CCNNGG	3 cut(s)	111, 232, 506
BssMI	GATC	5 cut(s)	21, 171, 277, 460, 706
BssNI	GRCGYC	2 cut(s)	5, 189
Bst2UI	CCWGG	2 cut(s)	507, 561
Bst4CI	ACNGT	1 cut(s)	45
BstACI	GRCGYC	2 cut(s)	5, 189
BstBI	TTCGAA	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	411
BstDSI	CCRYGG	1 cut(s)	111
BstEII	GGTNACC	1 cut(s)	295
BstF5I	GGATG	2 cut(s)	87, 727
BstFNI	CGCG	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	5 cut(s)	24, 174, 280, 463, 709
BstMAI	GTCTC	3 cut(s)	12, 24, 208
BstMBI	GATC	5 cut(s)	21, 171, 277, 460, 706
BstNI	CCWGG	2 cut(s)	507, 561
BstNSI	RCATGY	1 cut(s)	272
BstPI	GGTNACC	1 cut(s)	295
BstSCI	CCNGG	2 cut(s)	505, 559
BstSFI	CTRYAG	2 cut(s)	101, 156
BstUI	CGCG	1 cut(s)	51
BstX2I	RGATCY	3 cut(s)	277, 460, 706
BstYI	RGATCY	3 cut(s)	277, 460, 706
BsuRI	GGCC	1 cut(s)	670
BtgI	CCRYGG	1 cut(s)	111
BtsCI	GGATG	2 cut(s)	87, 727
CfoI	GCGC	1 cut(s)	51
Cfr10I	RCCGGY	1 cut(s)	261
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	3 cut(s)	41, 118, 340
CviAII	CATG	5 cut(s)	166, 269, 605, 613, 653
CviQI	GTAC	3 cut(s)	41, 118, 340
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	5 cut(s)	23, 173, 279, 462, 708
DpnII	GATC	5 cut(s)	21, 171, 277, 460, 706
DraI	TTTAAA	1 cut(s)	394
EaeI	YGGCCR	1 cut(s)	668
Ecl136II	GAGCTC	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	110
Eco53kI	GAGCTC	1 cut(s)	108
Eco91I	GGTNACC	1 cut(s)	295
EcoICRI	GAGCTC	1 cut(s)	108
EcoO65I	GGTNACC	1 cut(s)	295
EcoRII	CCWGG	2 cut(s)	505, 559
EcoT38I	GRGCYC	1 cut(s)	110
Esp3I	CGTCTC	2 cut(s)	12, 24
FaeI	CATG	5 cut(s)	169, 272, 608, 616, 656
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	5 cut(s)	165, 268, 604, 612, 652
Fnu4HI	GCNGC	1 cut(s)	148
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	148
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	1 cut(s)	148
HaeIII	GGCC	1 cut(s)	670
HapII	CCGG	2 cut(s)	262, 303
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	1 cut(s)	51
Hin1I	GRCGYC	2 cut(s)	5, 189
Hin1II	CATG	5 cut(s)	169, 272, 608, 616, 656
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HindIII	AAGCTT	1 cut(s)	357
HinfI	GANTC	3 cut(s)	35, 161, 548
HpaII	CCGG	2 cut(s)	262, 303
HphI	GGTGA	4 cut(s)	237, 307, 628, 701
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188I	TCNGA	1 cut(s)	414
Hpy188III	TCNNGA	3 cut(s)	70, 281, 568
Hpy8I	GTNNAC	1 cut(s)	342
Hpy99I	CGWCG	2 cut(s)	191, 257
HpyAV	CCTTC	3 cut(s)	20, 85, 297
HpyCH4III	ACNGT	1 cut(s)	45
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	1 cut(s)	16
HpyF3I	CTNAG	1 cut(s)	411
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	2 cut(s)	5, 189
Hsp92II	CATG	5 cut(s)	169, 272, 608, 616, 656
HspAI	GCGC	1 cut(s)	49
Kzo9I	GATC	5 cut(s)	21, 171, 277, 460, 706
LmnI	GCTCC	2 cut(s)	113, 562
LweI	GCATC	1 cut(s)	416
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	3 cut(s)	52, 295, 689
MalI	GATC	5 cut(s)	23, 173, 279, 462, 708
MboI	GATC	5 cut(s)	21, 171, 277, 460, 706
MboII	GAAGA	2 cut(s)	31, 470
MfeI	CAATTG	1 cut(s)	637
MflI	RGATCY	3 cut(s)	277, 460, 706
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	5 cut(s)	389, 401, 530, 637, 660
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	9 cut(s)	77, 242, 310, 310, 490, 512, 653, 709, 712
MseI	TTAA	2 cut(s)	393, 528
MslI	CAYNNNNRTG	1 cut(s)	180
MspI	CCGG	2 cut(s)	262, 303
MspR9I	CCNGG	2 cut(s)	507, 561
MunI	CAATTG	1 cut(s)	637
MvaI	CCWGG	2 cut(s)	507, 561
MvnI	CGCG	1 cut(s)	51
NdeII	GATC	5 cut(s)	21, 171, 277, 460, 706
NlaIII	CATG	5 cut(s)	169, 272, 608, 616, 656
NlaIV	GGNNCC	1 cut(s)	558
NmeAIII	GCCGAG	1 cut(s)	213
NmuCI	GTSAC	2 cut(s)	295, 689
NspI	RCATGY	1 cut(s)	272
NspV	TTCGAA	1 cut(s)	62
PciI	ACATGT	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PfeI	GAWTC	2 cut(s)	161, 548
PflMI	CCANNNNNTGG	1 cut(s)	653
PkrI	GCNGC	1 cut(s)	149
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PscI	ACATGT	1 cut(s)	268
Psp124BI	GAGCTC	1 cut(s)	110
Psp6I	CCWGG	2 cut(s)	505, 559
PspEI	GGTNACC	1 cut(s)	295
PspGI	CCWGG	2 cut(s)	505, 559
PspN4I	GGNNCC	1 cut(s)	558
PsuI	RGATCY	3 cut(s)	277, 460, 706
RsaI	GTAC	3 cut(s)	42, 119, 341
RsaNI	GTAC	3 cut(s)	41, 118, 340
RseI	CAYNNNNRTG	1 cut(s)	180
SacI	GAGCTC	1 cut(s)	110
SaqAI	TTAA	2 cut(s)	393, 528
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	5 cut(s)	21, 171, 277, 460, 706
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	2 cut(s)	507, 561
SduI	GDGCHC	1 cut(s)	110
SfaNI	GCATC	1 cut(s)	416
SfcI	CTRYAG	2 cut(s)	101, 156
SfuI	TTCGAA	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	2 cut(s)	68, 314
SmoI	CTYRAG	2 cut(s)	68, 314
Sse9I	AATT	5 cut(s)	389, 401, 530, 637, 660
SsiI	CCGC	3 cut(s)	91, 147, 248
SstI	GAGCTC	1 cut(s)	110
StyD4I	CCNGG	2 cut(s)	505, 559
TaaI	ACNGT	1 cut(s)	45
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	4 cut(s)	24, 62, 170, 714
TasI	AATT	5 cut(s)	389, 401, 530, 637, 660
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	2 cut(s)	161, 548
Tru1I	TTAA	2 cut(s)	393, 528
Tru9I	TTAA	2 cut(s)	393, 528
TseFI	GTSAC	2 cut(s)	295, 689
Tsp45I	GTSAC	2 cut(s)	295, 689
TspDTI	ATGAA	3 cut(s)	279, 603, 641
TspGWI	ACGGA	3 cut(s)	28, 100, 196
Van91I	CCANNNNNTGG	1 cut(s)	653
XapI	RAATTY	2 cut(s)	389, 530
XceI	RCATGY	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.