Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004808

Physical Location & Seq

Genomic Coordinates Reverse (-)

27381140 .. 27386166

Gene Structure 5027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00187940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTCTCTTCATCTCTACGACGATGCCAACACCAAAGTCGCCGATCTCGCGGACAATTCCGGACCCCTCGGCTTCTATTCCCCTCTCGACGGGTTCCGGCTACATATTATAGACCTGGACCCGTCGTCCATGACCTCCGGCGGGTGGCTGGAGGACACGTCATTGGTGGAGAAGTACACGATTTCCCAGGAAGCTTATGAGAAACGCGATGGCACTTTTAAAAAGTTTAAGGACAAATTGGCATCTCAGAATACATCAGCTGTTGATAATAAAATACCAGACAACTACATGGAAGACCTCTGTGTAAATATTAAGGTAGGAGATAGATGTCAAGTTGAACCAGGGGACAAAAGAGGTGTTGTTAAATTTGTCGGCCGAGCAGAATCTTTGGCTCCTGGTTTCTGGATTGGAGTTCAGTATGATGAACCATTGGGAAAGCACGATGGCATGGTGAAAGGAACTCGATACTTCAATTGCCCCCCTCTTCACGGCGCGGTGGTTCGACCCGACAAAGTCAAGGTCGGTGACTACCCGAACGAGATCCCTTTGAGGAGGATGAAATTTAAGTGGACCTTGAGGAGAGTACTTGTTAGACCAAAAACAAGGAGATTACTTATTTACCTCCTGTTTCTACTTGGCGGATGTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009524 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP_GLY Ubiquitin_2

Protein Analysis

216

Amino Acids

24.46

Weight (kDa)

8.77

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_2	PF14560	1 - 43	9.9e-10	Ubiquitin-like domain
CAP_GLY	PF01302	106 - 172	5.5e-24	CAP-Gly domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10220
fragaria_vesca	FvH4_4g13730
malus_domestica	MD04G1012500.v1.1
prunus_persica	Prupe.1G158700_v2.0.a1 Prupe.1G158700_v2.0.a1 Prupe.1G158700_v2.0.a1 Prupe.7G257800_v2.0.a1
pyrus_communis	pycom04g01000
rosa_chinensis	RchiOBHm_Chr4g0414381 RchiOBHm_Chr6g0280571
rosa_laevigata	RLG00000008151 RLG00000013048 RLG00000013049 RLG00000013783
rosa_multiflora	Rmu_sc0001432.1_g000007 Rmu_sc0016990.1_g000001 Rmu_sc0029306.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358240 Rroxscaffold_7G00187940
rosa_rugosa	Rorug04G0127600 Rorug04G0127700 Rorug04G0127800
rosa_samantha	Rh4AG185700 Rh4BG185000 Rh4CG198300 Rh6AG245100 Rh6CG249100 Rh6DG239900
rosa_wichuraiana	Rw0G001630 Rw4G015880 Rw6G021210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	50, 207, 494
AccIII	TCCGGA	1 cut(s)	59
AciI	CCGC	4 cut(s)	50, 141, 494, 639
AclWI	GGATC	1 cut(s)	535
AcoI	YGGCCR	1 cut(s)	373
AcsI	RAATTY	2 cut(s)	365, 560
AfaI	GTAC	2 cut(s)	176, 585
AfiI	CCNNNNNNNGG	4 cut(s)	89, 141, 144, 488
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	2 cut(s)	338, 472
AhdI	GACNNNNNGTC	1 cut(s)	124
AjiI	CACGTC	1 cut(s)	159
AjnI	CCWGG	4 cut(s)	114, 186, 340, 394
AluBI	AGCT	2 cut(s)	194, 260
AluI	AGCT	2 cut(s)	194, 260
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	535
Aor13HI	TCCGGA	1 cut(s)	59
AoxI	GGCC	1 cut(s)	373
ApoI	RAATTY	2 cut(s)	365, 560
ArsI	GACNNNNNNTTYG	2 cut(s)	504, 536
AspLEI	GCGC	1 cut(s)	494
AspS9I	GGNCC	3 cut(s)	62, 118, 570
AsuHPI	GGTGA	2 cut(s)	463, 536
AvaII	GGWCC	3 cut(s)	62, 118, 570
BbsI	GAAGAC	1 cut(s)	300
BccI	CCATC	2 cut(s)	203, 437
BceAI	ACGGC	1 cut(s)	505
BciT130I	CCWGG	4 cut(s)	116, 188, 342, 396
BcoDI	GTCTC	1 cut(s)	9
BmcAI	AGTACT	1 cut(s)	585
Bme1390I	CCNGG	4 cut(s)	116, 188, 342, 396
Bme18I	GGWCC	3 cut(s)	62, 118, 570
BmeRI	GACNNNNNGTC	1 cut(s)	124
BmgBI	CACGTC	1 cut(s)	159
BmgT120I	GGNCC	3 cut(s)	62, 118, 570
BmiI	GGNNCC	4 cut(s)	64, 95, 120, 393
BmrFI	CCNGG	4 cut(s)	116, 188, 342, 396
BmsI	GCATC	2 cut(s)	13, 251
BpiI	GAAGAC	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	595
BsaJI	CCNNGG	3 cut(s)	67, 186, 341
BsaWI	WCCGGW	1 cut(s)	59
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	4 cut(s)	89, 141, 144, 488
BseAI	TCCGGA	1 cut(s)	59
BseBI	CCWGG	4 cut(s)	116, 188, 342, 396
BseDI	CCNNGG	3 cut(s)	67, 186, 341
BseGI	GGATG	2 cut(s)	561, 647
BseLI	CCNNNNNNNGG	4 cut(s)	89, 141, 144, 488
BseMII	CTCAG	1 cut(s)	260
BseRI	GAGGAG	2 cut(s)	565, 592
BseX3I	CGGCCG	1 cut(s)	373
Bsh1236I	CGCG	3 cut(s)	50, 207, 494
Bsh1285I	CGRYCG	1 cut(s)	376
BshFI	GGCC	1 cut(s)	375
BsiEI	CGRYCG	1 cut(s)	376
BsiSI	CCGG	3 cut(s)	60, 97, 138
BslFI	GGGAC	1 cut(s)	359
BslI	CCNNNNNNNGG	4 cut(s)	89, 141, 144, 488
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	359
BsnI	GGCC	1 cut(s)	375
Bsp13I	TCCGGA	1 cut(s)	59
Bsp143I	GATC	2 cut(s)	43, 540
BspACI	CCGC	4 cut(s)	50, 141, 494, 639
BspANI	GGCC	1 cut(s)	375
BspCNI	CTCAG	1 cut(s)	259
BspEI	TCCGGA	1 cut(s)	59
BspFNI	CGCG	3 cut(s)	50, 207, 494
BspLI	GGNNCC	4 cut(s)	64, 95, 120, 393
BspPI	GGATC	1 cut(s)	535
BssECI	CCNNGG	3 cut(s)	67, 186, 341
BssMI	GATC	2 cut(s)	43, 540
Bst2UI	CCWGG	4 cut(s)	116, 188, 342, 396
Bst6I	CTCTTC	2 cut(s)	12, 489
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	2 cut(s)	561, 647
BstFNI	CGCG	3 cut(s)	50, 207, 494
BstHHI	GCGC	1 cut(s)	494
BstKTI	GATC	2 cut(s)	46, 543
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	43, 540
BstMCI	CGRYCG	1 cut(s)	376
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	4 cut(s)	116, 188, 342, 396
BstSCI	CCNGG	4 cut(s)	114, 186, 340, 394
BstUI	CGCG	3 cut(s)	50, 207, 494
BstV2I	GAAGAC	1 cut(s)	300
BstX2I	RGATCY	1 cut(s)	540
BstYI	RGATCY	1 cut(s)	540
BstZI	CGGCCG	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	375
BtgZI	GCGATG	1 cut(s)	222
BtrI	CACGTC	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	561, 647
CfoI	GCGC	1 cut(s)	494
Cfr13I	GGNCC	3 cut(s)	62, 118, 570
Csp6I	GTAC	2 cut(s)	175, 584
CviAII	CATG	3 cut(s)	130, 289, 448
CviJI	RGCY	7 cut(s)	72, 100, 148, 194, 260, 375, 392
CviKI_1	RGCY	7 cut(s)	72, 100, 148, 194, 260, 375, 392
CviQI	GTAC	2 cut(s)	175, 584
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	2 cut(s)	45, 542
DpnII	GATC	2 cut(s)	43, 540
DraI	TTTAAA	1 cut(s)	220
DriI	GACNNNNNGTC	1 cut(s)	124
EaeI	YGGCCR	1 cut(s)	373
EagI	CGGCCG	1 cut(s)	373
Eam1104I	CTCTTC	2 cut(s)	12, 489
Eam1105I	GACNNNNNGTC	1 cut(s)	124
EarI	CTCTTC	2 cut(s)	12, 489
EclXI	CGGCCG	1 cut(s)	373
Eco47I	GGWCC	3 cut(s)	62, 118, 570
Eco52I	CGGCCG	1 cut(s)	373
EcoRII	CCWGG	4 cut(s)	114, 186, 340, 394
FaeI	CATG	3 cut(s)	133, 292, 451
FaiI	YATR	7 cut(s)	105, 110, 131, 198, 290, 420, 449
FalI	AAGNNNNNCTT	2 cut(s)	557, 589
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	3 cut(s)	129, 288, 447
FauI	CCCGC	1 cut(s)	134
FokI	GGATG	1 cut(s)	568
GlaI	GCGC	1 cut(s)	493
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	375
HapII	CCGG	3 cut(s)	60, 97, 138
HhaI	GCGC	1 cut(s)	494
Hin1II	CATG	3 cut(s)	133, 292, 451
Hin6I	GCGC	1 cut(s)	492
HinP1I	GCGC	1 cut(s)	492
HindIII	AAGCTT	1 cut(s)	192
HinfI	GANTC	1 cut(s)	383
HpaII	CCGG	3 cut(s)	60, 97, 138
HphI	GGTGA	2 cut(s)	463, 536
Hpy166II	GTNNAC	2 cut(s)	177, 570
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	3 cut(s)	60, 86, 403
Hpy8I	GTNNAC	2 cut(s)	177, 570
Hpy99I	CGWCG	3 cut(s)	23, 92, 127
HpyCH4IV	ACGT	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	158
Hsp92II	CATG	3 cut(s)	133, 292, 451
HspAI	GCGC	1 cut(s)	492
Kpn2I	TCCGGA	1 cut(s)	59
Kzo9I	GATC	2 cut(s)	43, 540
LmnI	GCTCC	1 cut(s)	397
LweI	GCATC	2 cut(s)	13, 251
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	524
MalI	GATC	2 cut(s)	45, 542
MboI	GATC	2 cut(s)	43, 540
MboII	GAAGA	2 cut(s)	305, 476
MfeI	CAATTG	1 cut(s)	472
MflI	RGATCY	1 cut(s)	540
MluCI	AATT	5 cut(s)	55, 236, 365, 472, 560
MroI	TCCGGA	1 cut(s)	59
MseI	TTAA	5 cut(s)	219, 228, 312, 363, 564
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	3 cut(s)	60, 97, 138
MspR9I	CCNGG	4 cut(s)	116, 188, 342, 396
MunI	CAATTG	1 cut(s)	472
MvaI	CCWGG	4 cut(s)	116, 188, 342, 396
MvnI	CGCG	3 cut(s)	50, 207, 494
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	2 cut(s)	43, 540
NlaIII	CATG	3 cut(s)	133, 292, 451
NlaIV	GGNNCC	4 cut(s)	64, 95, 120, 393
NmeAIII	GCCGAG	2 cut(s)	48, 401
NmuCI	GTSAC	1 cut(s)	524
PfeI	GAWTC	1 cut(s)	383
PflFI	GACNNNGTC	1 cut(s)	512
Psp6I	CCWGG	4 cut(s)	114, 186, 340, 394
PspGI	CCWGG	4 cut(s)	114, 186, 340, 394
PspN4I	GGNNCC	4 cut(s)	64, 95, 120, 393
PspPI	GGNCC	3 cut(s)	62, 118, 570
PsuI	RGATCY	1 cut(s)	540
PsyI	GACNNNGTC	1 cut(s)	512
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	2 cut(s)	176, 585
RsaNI	GTAC	2 cut(s)	175, 584
SaqAI	TTAA	5 cut(s)	219, 228, 312, 363, 564
Sau3AI	GATC	2 cut(s)	43, 540
Sau96I	GGNCC	3 cut(s)	62, 118, 570
ScaI	AGTACT	1 cut(s)	585
ScrFI	CCNGG	4 cut(s)	116, 188, 342, 396
SfaNI	GCATC	2 cut(s)	13, 251
SinI	GGWCC	3 cut(s)	62, 118, 570
SmlI	CTYRAG	1 cut(s)	574
SmoI	CTYRAG	1 cut(s)	574
Sse9I	AATT	5 cut(s)	55, 236, 365, 472, 560
SsiI	CCGC	4 cut(s)	50, 141, 494, 639
SspI	AATATT	1 cut(s)	310
StyD4I	CCNGG	4 cut(s)	114, 186, 340, 394
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	3 cut(s)	87, 463, 502
TasI	AATT	5 cut(s)	55, 236, 365, 472, 560
TatI	WGTACW	2 cut(s)	174, 583
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	5 cut(s)	219, 228, 312, 363, 564
Tru9I	TTAA	5 cut(s)	219, 228, 312, 363, 564
TseFI	GTSAC	1 cut(s)	524
Tsp45I	GTSAC	1 cut(s)	524
TspDTI	ATGAA	2 cut(s)	438, 572
Tth111I	GACNNNGTC	1 cut(s)	512
VpaK11BI	GGWCC	3 cut(s)	62, 118, 570
XapI	RAATTY	2 cut(s)	365, 560
ZrmI	AGTACT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.