Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010559

Physical Location & Seq

Genomic Coordinates Forward (+)

20806794 .. 20808769

Gene Structure 1976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G205900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTTATAGCTCACACTGAGCTTGCTCTGTTTTGGACAGAGCCTGCAATAGAAAAATACACACTTCACTTTCTTGATCTTTTTCACCACAGTATCCGTCCTGATCATGAAAATTGCTTCTCTACTCTTCCATGGCAAGAACCACGAGGTAAGCAAATCCAGCTGGTCATGTCCATACAAGAGCTAAAGCAGGCTGGTGTCAAGCTCAAGGCCGATACAAATCGTCAACCATTAGATATAAGTTTCAGTAGCACATTGAGGGGGAATGTTCTGACAATCCCTCCAATACACATAGATGATCACAGAGGCACTTCGTTTCGCACTCTGCTAGCACTCAACATGTCACCAGCATTGCCACCAAGATCATTGCCACCAAGATGTTACAAGCTATTTGTCTTTCTAGACGATCTGATTAACTCATCCAAGGATGTAGGGCTTCTATACTACCACAGGGTCCTCCAGCATTCTCTAGGGAGCAACAGAATGGTGGCTAAACTTGTCAACAAGAGGCAAGGAATTTTGGTGCACCACTATTTAAGCAGCTGGGTGGTGGGCGTTTCATCTCTGGGAGCAATCTTAGCTCTTTACCTCGCCCTCATTCAGACCGGCTGTGGAGTTGCCGGTGCCAGAAGGGATCTGGGACACGAGTTCAGTTTCTTATCGTTTCTGAAGAAAAACAAAAACATGCAGATCACGTACAGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

236

Amino Acids

26.66

Weight (kDa)

9.61

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010559)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g30280 FvH4_6g34750
malus_domestica	MD04G1048500.v1.1 MD04G1048600.v1.1
prunus_persica	Prupe.1G205900_v2.0.a1 Prupe.3G091600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0145481 RchiOBHm_Chr5g0054041
rosa_laevigata	RLG00000020145
rosa_multiflora	Rmu_sc0000092.1_g000004 Rmu_sc0002199.1_g000009
rosa_roxburghii	Rroxscaffold_152G00434520 Rroxscaffold_152G00434540 Rroxscaffold_2G00100720
rosa_rugosa	Rorug02G0392200
rosa_samantha	Rh2AG445600 Rh2AG596000 Rh2BG457000 Rh2CG432100 Rh2DG466700
rosa_wichuraiana	Rw2G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	623
AclWI	GGATC	1 cut(s)	642
AcsI	RAATTY	1 cut(s)	516
AcuI	CTGAAG	1 cut(s)	689
AfaI	GTAC	1 cut(s)	698
AflIII	ACRYGT	1 cut(s)	339
AluBI	AGCT	8 cut(s)	11, 22, 163, 184, 205, 388, 543, 581
AluI	AGCT	8 cut(s)	11, 22, 163, 184, 205, 388, 543, 581
Alw21I	GWGCWC	1 cut(s)	528
Alw44I	GTGCAC	1 cut(s)	524
AlwI	GGATC	1 cut(s)	642
AlwNI	CAGNNNCTG	1 cut(s)	44
AoxI	GGCC	2 cut(s)	210, 701
ApaLI	GTGCAC	1 cut(s)	524
ApeKI	GCWGC	1 cut(s)	540
ApoI	RAATTY	1 cut(s)	516
AspS9I	GGNCC	1 cut(s)	454
AsuHPI	GGTGA	2 cut(s)	77, 336
AsuNHI	GCTAGC	1 cut(s)	328
AvaII	GGWCC	1 cut(s)	454
BaeGI	GKGCMC	1 cut(s)	528
BaeI	ACNNNNGTAYC	2 cut(s)	76, 109
BanI	GGYRCC	1 cut(s)	623
BauI	CACGAG	2 cut(s)	144, 644
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	1 cut(s)	552
BciVI	GTATCC	1 cut(s)	104
BclI	TGATCA	2 cut(s)	103, 298
BfaI	CTAG	3 cut(s)	329, 401, 470
BfuI	GTATCC	1 cut(s)	104
BisI	GCNGC	1 cut(s)	541
BlsI	GCNGC	1 cut(s)	542
Bme18I	GGWCC	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	454
BmiI	GGNNCC	2 cut(s)	455, 625
BmtI	GCTAGC	1 cut(s)	332
BpmI	CTGGAG	1 cut(s)	443
BpuEI	CTTGAG	1 cut(s)	191
BsaAI	YACGTR	1 cut(s)	696
BsaBI	GATNNNNATC	1 cut(s)	219
BsaJI	CCNNGG	2 cut(s)	131, 423
BsaXI	ACNNNNNCTCC	2 cut(s)	265, 295
Bse118I	RCCGGY	2 cut(s)	605, 620
Bse3DI	GCAATG	2 cut(s)	350, 365
Bse8I	GATNNNNATC	1 cut(s)	219
BseDI	CCNNGG	2 cut(s)	131, 423
BseGI	GGATG	2 cut(s)	419, 433
BseJI	GATNNNNATC	1 cut(s)	219
BseMI	GCAATG	2 cut(s)	350, 365
BseMII	CTCAG	1 cut(s)	9
BseSI	GKGCMC	1 cut(s)	528
BseXI	GCAGC	1 cut(s)	552
BseYI	CCCAGC	1 cut(s)	543
BshFI	GGCC	2 cut(s)	212, 703
BshNI	GGYRCC	1 cut(s)	623
BsiHKAI	GWGCWC	1 cut(s)	528
BsiSI	CCGG	2 cut(s)	606, 621
BslFI	GGGAC	1 cut(s)	654
BsmFI	GGGAC	1 cut(s)	654
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	2 cut(s)	212, 703
Bsp1286I	GDGCHC	1 cut(s)	528
Bsp143I	GATC	7 cut(s)	76, 103, 298, 362, 406, 634, 690
Bsp19I	CCATGG	1 cut(s)	131
BspANI	GGCC	2 cut(s)	212, 703
BspCNI	CTCAG	1 cut(s)	10
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	455, 625
BspOI	GCTAGC	1 cut(s)	332
BspPI	GGATC	1 cut(s)	642
BspT107I	GGYRCC	1 cut(s)	623
BsrDI	GCAATG	2 cut(s)	350, 365
BsrFI	RCCGGY	2 cut(s)	605, 620
BssAI	RCCGGY	2 cut(s)	605, 620
BssECI	CCNNGG	2 cut(s)	131, 423
BssMI	GATC	7 cut(s)	76, 103, 298, 362, 406, 634, 690
BssSI	CACGAG	2 cut(s)	144, 644
BssT1I	CCWWGG	2 cut(s)	131, 423
Bst2BI	CACGAG	2 cut(s)	144, 644
Bst4CI	ACNGT	1 cut(s)	92
Bst6I	CTCTTC	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	696
BstC8I	GCNNGC	4 cut(s)	24, 45, 192, 330
BstDEI	CTNAG	2 cut(s)	18, 577
BstDSI	CCRYGG	1 cut(s)	131
BstF5I	GGATG	2 cut(s)	419, 433
BstKTI	GATC	7 cut(s)	79, 106, 301, 365, 409, 637, 693
BstMBI	GATC	7 cut(s)	76, 103, 298, 362, 406, 634, 690
BstMWI	GCNNNNNNNGC	2 cut(s)	160, 578
BstNSI	RCATGY	2 cut(s)	343, 688
BstSLI	GKGCMC	1 cut(s)	528
BstV1I	GCAGC	1 cut(s)	552
BstX2I	RGATCY	1 cut(s)	634
BstYI	RGATCY	1 cut(s)	634
BsuI	GTATCC	1 cut(s)	104
BsuRI	GGCC	2 cut(s)	212, 703
BtgI	CCRYGG	1 cut(s)	131
BtsCI	GGATG	2 cut(s)	419, 433
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	4 cut(s)	24, 45, 192, 330
CaiI	CAGNNNCTG	1 cut(s)	44
CciI	TCATGA	1 cut(s)	106
Cfr10I	RCCGGY	2 cut(s)	605, 620
Cfr13I	GGNCC	1 cut(s)	454
Csp6I	GTAC	1 cut(s)	697
CviAII	CATG	5 cut(s)	107, 132, 169, 340, 685
CviQI	GTAC	1 cut(s)	697
DdeI	CTNAG	2 cut(s)	18, 577
DpnI	GATC	7 cut(s)	78, 105, 300, 364, 408, 636, 692
DpnII	GATC	7 cut(s)	76, 103, 298, 362, 406, 634, 690
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	2 cut(s)	131, 423
Eco147I	AGGCCT	1 cut(s)	703
Eco47I	GGWCC	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	689
EcoO109I	RGGNCCY	1 cut(s)	454
EcoT14I	CCWWGG	2 cut(s)	131, 423
ErhI	CCWWGG	2 cut(s)	131, 423
FaeI	CATG	5 cut(s)	110, 135, 172, 343, 688
FaqI	GGGAC	1 cut(s)	654
FatI	CATG	5 cut(s)	106, 131, 168, 339, 684
FbaI	TGATCA	2 cut(s)	103, 298
Fnu4HI	GCNGC	1 cut(s)	541
FokI	GGATG	2 cut(s)	406, 440
Fsp4HI	GCNGC	1 cut(s)	541
FspBI	CTAG	3 cut(s)	329, 401, 470
GluI	GCNGC	1 cut(s)	541
GsaI	CCCAGC	1 cut(s)	547
GsuI	CTGGAG	1 cut(s)	443
HaeIII	GGCC	2 cut(s)	212, 703
HapII	CCGG	2 cut(s)	606, 621
Hin1II	CATG	5 cut(s)	110, 135, 172, 343, 688
HincII	GTYRAC	2 cut(s)	227, 502
HindII	GTYRAC	2 cut(s)	227, 502
HpaII	CCGG	2 cut(s)	606, 621
HphI	GGTGA	2 cut(s)	77, 336
Hpy166II	GTNNAC	3 cut(s)	227, 502, 526
Hpy188I	TCNGA	4 cut(s)	273, 411, 603, 669
Hpy188III	TCNNGA	4 cut(s)	74, 101, 107, 401
Hpy8I	GTNNAC	3 cut(s)	227, 502, 526
HpyAV	CCTTC	1 cut(s)	624
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	695
HpyCH4V	TGCA	3 cut(s)	47, 526, 688
HpyF10VI	GCNNNNNNNGC	2 cut(s)	160, 578
HpyF3I	CTNAG	2 cut(s)	18, 577
HpySE526I	ACGT	1 cut(s)	695
Hsp92II	CATG	5 cut(s)	110, 135, 172, 343, 688
Ksp22I	TGATCA	2 cut(s)	103, 298
Kzo9I	GATC	7 cut(s)	76, 103, 298, 362, 406, 634, 690
LmnI	GCTCC	2 cut(s)	474, 569
Lsp1109I	GCAGC	1 cut(s)	552
MaeI	CTAG	3 cut(s)	329, 401, 470
MaeII	ACGT	1 cut(s)	695
MaeIII	GTNAC	2 cut(s)	342, 380
MalI	GATC	7 cut(s)	78, 105, 300, 364, 408, 636, 692
MboI	GATC	7 cut(s)	76, 103, 298, 362, 406, 634, 690
MboII	GAAGA	2 cut(s)	119, 682
MflI	RGATCY	1 cut(s)	634
MhlI	GDGCHC	1 cut(s)	528
MluCI	AATT	2 cut(s)	112, 516
MnlI	CCTC	8 cut(s)	140, 252, 291, 299, 467, 501, 599, 605
MseI	TTAA	2 cut(s)	414, 536
MslI	CAYNNNNRTG	2 cut(s)	294, 376
MspA1I	CMGCKG	2 cut(s)	163, 543
MspI	CCGG	2 cut(s)	606, 621
Mva1269I	GAATGC	1 cut(s)	463
MwoI	GCNNNNNNNGC	2 cut(s)	160, 578
NcoI	CCATGG	1 cut(s)	131
NdeII	GATC	7 cut(s)	76, 103, 298, 362, 406, 634, 690
NheI	GCTAGC	1 cut(s)	328
NlaIII	CATG	5 cut(s)	110, 135, 172, 343, 688
NlaIV	GGNNCC	2 cut(s)	455, 625
NmuCI	GTSAC	1 cut(s)	342
NspI	RCATGY	2 cut(s)	343, 688
PagI	TCATGA	1 cut(s)	106
PceI	AGGCCT	1 cut(s)	703
PciI	ACATGT	1 cut(s)	339
PctI	GAATGC	1 cut(s)	463
PkrI	GCNGC	1 cut(s)	542
Ppu21I	YACGTR	1 cut(s)	696
PpuMI	RGGWCCY	1 cut(s)	454
PscI	ACATGT	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	454
PspFI	CCCAGC	1 cut(s)	543
PspN4I	GGNNCC	2 cut(s)	455, 625
PspPI	GGNCC	1 cut(s)	454
PspPPI	RGGWCCY	1 cut(s)	454
PstNI	CAGNNNCTG	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	634
PvuII	CAGCTG	2 cut(s)	163, 543
RsaI	GTAC	1 cut(s)	698
RsaNI	GTAC	1 cut(s)	697
RseI	CAYNNNNRTG	2 cut(s)	294, 376
SaqAI	TTAA	2 cut(s)	414, 536
SatI	GCNGC	1 cut(s)	541
Sau3AI	GATC	7 cut(s)	76, 103, 298, 362, 406, 634, 690
Sau96I	GGNCC	1 cut(s)	454
SduI	GDGCHC	1 cut(s)	528
SinI	GGWCC	1 cut(s)	454
SmiMI	CAYNNNNRTG	2 cut(s)	294, 376
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	112, 516
SseBI	AGGCCT	1 cut(s)	703
SspMI	CTAG	3 cut(s)	329, 401, 470
StuI	AGGCCT	1 cut(s)	703
StyI	CCWWGG	2 cut(s)	131, 423
TaaI	ACNGT	1 cut(s)	92
TaiI	ACGT	1 cut(s)	698
TasI	AATT	2 cut(s)	112, 516
Tru1I	TTAA	2 cut(s)	414, 536
Tru9I	TTAA	2 cut(s)	414, 536
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	1 cut(s)	342
TseI	GCWGC	1 cut(s)	540
Tsp45I	GTSAC	1 cut(s)	342
TspDTI	ATGAA	2 cut(s)	123, 549
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	22
VneI	GTGCAC	1 cut(s)	524
VpaK11BI	GGWCC	1 cut(s)	454
XapI	RAATTY	1 cut(s)	516
XbaI	TCTAGA	1 cut(s)	400
XceI	RCATGY	2 cut(s)	343, 688
XcmI	CCANNNNNNNNNTGG	1 cut(s)	634
XspI	CTAG	3 cut(s)	329, 401, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.