Rh2CG432100

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0010559
Physical Location & Seq
Forward (+)
58817278 .. 58819200
1923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG432100.1

Sequence Viewer

Length: 1266 bp
ATGGTAATTCTGGGAAAATTGAAGTTTCTTCAATCCCACATTCAAATGGGGAAGGGAAGCCTTATAATTGCAAGCAGATGGTTAATCTTGCAGAAGATAACCAGCAATTGCAGAAGGAGATTTCCAGAAAGTTTGGCTTGTACTACTTTTCCTACACTTGATGCAAGAGGTTTCCATCAAGTTCGTGGTGGCAGCTCATCATTGACAGAAGAGCTGGAGGGTATTCTTAATCCTGAAGATCAAGGGAGGGAGAGTAGTACTTATAACTCTATGACCTGCATTTACAGGGTTCCTAGCACCATGCGTCAGGTGAACAGGAAGGCTTACGAGCCCAACATTGTGTCCATCGGTCCTTACCATCACGGAGTTGAAAGCCTACAAGAAATGGAGAAGCTTAAGCACACATACTTTCGGCGCCTCTTTCAACCAAACTACCATGATCGGTTGGATGATGAAGTAGTGTCGCTGAAGAAGAAGGCGGTAGATGATGCGAAGAAGGCAATGGAGGAATTGGAGGTGGCGGCTAGGAGCTGCTACTCGGAACAATCCAAGCTTAGCAGCAAGGCGTTTGTAAAGATGATGCTGATTGATGGTTGCTTCATTATAGGGTTGCTCAGGGACTCATTGCAGTCCGATTTTGAGCACACACCCTCCATCATTCAAAGGTGGATGCTTCCAACTCTGCGCCGGGATTTGATCAAAATCGAAAATCAGCTTCCCCTCTTTGTCTTGCGCAAATTATATCAGCTGACCGAAGCAAGCACTACTTGTCATGAGAAACCAATTGCAAGTTGGAAATTGGAAGCACTAGCCCTTCGCTTCTTTAAGCCGCTACTGCGAGGACATGATGTTCTGACCAAAACACCGCAGCATTATGCACCACAACATTGTCAAAGCAGCAGCAGCAAGCACTTTCTTGATCTTTTCCACAGGACAATCAGTCCGGACTGCTCTACCCGTTCAGTACTGCAAGCGCCGCGGCGAGGGAAGCAAACCAAGCAGATTCTATCAGTACAAGAGCTCAAGGAGGCCGGAGTCAAGTTCAGAACAGACCCCACTCGAGGGCCACTAGACATCACTTTCGGCCGCAGCGCTTGGGGTTGGGGGAAGCCTCATCAACTCGGCCAAGGATGTAGGACTTCTGCACTACCACGGTGTCCTTCACCACTCTCTAGGCAGCAACAGAAGGGTGGCGAAACTCGTCAACAACCTTTGCAAGGAGGTTGGTCCGGATGTTTCCAAGTCCTACTTGCACAAGGTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

421

Amino Acids

47.86

Weight (kDa)

9.63

Isoelectric Point (pI)

62.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 94 - 362 1.6e-63 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 65, 264
Acc16I TGCGCA 1 cut(s) 734
Acc36I ACCTGC 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 414
AccII CGCG 1 cut(s) 979
AccIII TCCGGA 2 cut(s) 943, 1229
AciI CCGC 7 cut(s) 479, 521, 830, 866, 977, 979, 1087
AcoI YGGCCR 2 cut(s) 1084, 1123
AcuI CTGAAG 2 cut(s) 255, 488
AcyI GRCGYC 1 cut(s) 415
AdeI CACNNNGTG 1 cut(s) 1259
AfaI GTAC 4 cut(s) 142, 259, 966, 1014
AfeI AGCGCT 1 cut(s) 1093
AfiI CCNNNNNNNGG 4 cut(s) 983, 1061, 1062, 1217
AflII CTTAAG 1 cut(s) 395
AgsI TTSAA 6 cut(s) 22, 32, 44, 371, 425, 662
AhdI GACNNNNNGTC 1 cut(s) 939
AloI GAACNNNNNNTCC 2 cut(s) 834, 866
AluBI AGCT 8 cut(s) 195, 214, 394, 531, 553, 715, 748, 1021
AluI AGCT 8 cut(s) 195, 214, 394, 531, 553, 715, 748, 1021
Alw21I GWGCWC 2 cut(s) 645, 1023
Ama87I CYCGRG 1 cut(s) 1059
Aor13HI TCCGGA 2 cut(s) 943, 1229
Aor51HI AGCGCT 1 cut(s) 1093
AoxI GGCC 4 cut(s) 1029, 1064, 1084, 1123
ApeKI GCWGC 9 cut(s) 192, 531, 558, 868, 897, 900, 903, 1089, 1177
ArsI GACNNNNNNTTYG 2 cut(s) 1064, 1096
AspLEI GCGC 5 cut(s) 417, 687, 735, 976, 1094
AspS9I GGNCC 3 cut(s) 350, 1064, 1227
AsuC2I CCSGG 1 cut(s) 689
AsuHPI GGTGA 2 cut(s) 322, 1155
AvaI CYCGRG 1 cut(s) 1059
AvaII GGWCC 2 cut(s) 350, 1227
BanI GGYRCC 1 cut(s) 414
BanII GRGCYC 2 cut(s) 333, 1023
Bbv12I GWGCWC 2 cut(s) 645, 1023
BbvI GCAGC 9 cut(s) 204, 518, 570, 880, 909, 912, 915, 1101, 1189
BccI CCATC 6 cut(s) 72, 183, 353, 366, 584, 662
BclI TGATCA 1 cut(s) 696
BcnI CCSGG 1 cut(s) 689
BfaI CTAG 5 cut(s) 294, 525, 809, 1070, 1173
BfoI RGCGCY 3 cut(s) 418, 977, 1095
BfrI CTTAAG 1 cut(s) 395
BfuAI ACCTGC 1 cut(s) 284
BlpI GCTNAGC 1 cut(s) 554
BmcAI AGTACT 2 cut(s) 259, 966
Bme1390I CCNGG 1 cut(s) 689
Bme18I GGWCC 2 cut(s) 350, 1227
BmeRI GACNNNNNGTC 1 cut(s) 939
BmeT110I CYCGRG 1 cut(s) 1059
BmgT120I GGNCC 3 cut(s) 350, 1064, 1227
BmiI GGNNCC 2 cut(s) 291, 416
BmrFI CCNGG 1 cut(s) 689
BmsI GCATC 4 cut(s) 151, 478, 570, 660
BpmI CTGGAG 1 cut(s) 236
Bpu10I CCTNAGC 1 cut(s) 614
Bpu1102I GCTNAGC 1 cut(s) 554
BpuEI CTTGAG 1 cut(s) 1007
BpuMI CCSGG 1 cut(s) 689
BsaBI GATNNNNATC 1 cut(s) 701
BsaHI GRCGYC 1 cut(s) 415
BsaJI CCNNGG 3 cut(s) 977, 1126, 1151
BsaWI WCCGGW 2 cut(s) 943, 1229
BsaXI ACNNNNNCTCC 4 cut(s) 238, 268, 635, 665
Bsc4I CCNNNNNNNGG 4 cut(s) 983, 1061, 1062, 1217
Bse3DI GCAATG 2 cut(s) 507, 623
Bse8I GATNNNNATC 1 cut(s) 701
BseAI TCCGGA 2 cut(s) 943, 1229
BseDI CCNNGG 3 cut(s) 977, 1126, 1151
BseGI GGATG 4 cut(s) 454, 675, 1136, 1238
BseJI GATNNNNATC 1 cut(s) 701
BseLI CCNNNNNNNGG 4 cut(s) 983, 1061, 1062, 1217
BseMI GCAATG 2 cut(s) 507, 623
BseMII CTCAG 1 cut(s) 628
BseX3I CGGCCG 1 cut(s) 1084
BseXI GCAGC 9 cut(s) 204, 518, 570, 880, 909, 912, 915, 1101, 1189
BsgI GTGCAG 1 cut(s) 1128
Bsh1236I CGCG 1 cut(s) 979
Bsh1285I CGRYCG 1 cut(s) 1087
BshFI GGCC 4 cut(s) 1031, 1066, 1086, 1125
BshNI GGYRCC 1 cut(s) 414
BsiEI CGRYCG 1 cut(s) 1087
BsiHKAI GWGCWC 2 cut(s) 645, 1023
BsiHKCI CYCGRG 1 cut(s) 1059
BsiSI CCGG 4 cut(s) 688, 944, 1032, 1230
BslFI GGGAC 1 cut(s) 632
BslI CCNNNNNNNGG 4 cut(s) 983, 1061, 1062, 1217
BsmFI GGGAC 1 cut(s) 632
BsnI GGCC 4 cut(s) 1031, 1066, 1086, 1125
BsoBI CYCGRG 1 cut(s) 1059
Bsp1286I GDGCHC 3 cut(s) 333, 645, 1023
Bsp13I TCCGGA 2 cut(s) 943, 1229
Bsp143I GATC 4 cut(s) 238, 439, 696, 919
Bsp1720I GCTNAGC 1 cut(s) 554
BspACI CCGC 7 cut(s) 479, 521, 830, 866, 977, 979, 1087
BspANI GGCC 4 cut(s) 1031, 1066, 1086, 1125
BspCNI CTCAG 1 cut(s) 627
BspEI TCCGGA 2 cut(s) 943, 1229
BspFNI CGCG 1 cut(s) 979
BspHI TCATGA 1 cut(s) 772
BspLI GGNNCC 2 cut(s) 291, 416
BspMI ACCTGC 1 cut(s) 284
BspQI GCTCTTC 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 414
BspTI CTTAAG 1 cut(s) 395
BsrDI GCAATG 2 cut(s) 507, 623
BssECI CCNNGG 3 cut(s) 977, 1126, 1151
BssMI GATC 4 cut(s) 238, 439, 696, 919
BssNI GRCGYC 1 cut(s) 415
BssT1I CCWWGG 1 cut(s) 1126
Bst4CI ACNGT 1 cut(s) 1155
Bst6I CTCTTC 1 cut(s) 204
BstACI GRCGYC 1 cut(s) 415
BstAFI CTTAAG 1 cut(s) 395
BstC8I GCNNGC 4 cut(s) 73, 760, 908, 972
BstDEI CTNAG 2 cut(s) 554, 614
BstDSI CCRYGG 2 cut(s) 977, 1151
BstENI CCTNNNNNAGG 1 cut(s) 1215
BstF5I GGATG 4 cut(s) 454, 675, 1136, 1238
BstFNI CGCG 1 cut(s) 979
BstH2I RGCGCY 3 cut(s) 418, 977, 1095
BstHHI GCGC 5 cut(s) 417, 687, 735, 976, 1094
BstKTI GATC 4 cut(s) 241, 442, 699, 922
BstMBI GATC 4 cut(s) 238, 439, 696, 919
BstMCI CGRYCG 1 cut(s) 1087
BstMWI GCNNNNNNNGC 6 cut(s) 497, 835, 903, 976, 988, 997
BstSCI CCNGG 1 cut(s) 687
BstUI CGCG 1 cut(s) 979
BstV1I GCAGC 9 cut(s) 204, 518, 570, 880, 909, 912, 915, 1101, 1189
BstZI CGGCCG 1 cut(s) 1084
BsuRI GGCC 4 cut(s) 1031, 1066, 1086, 1125
BtgI CCRYGG 2 cut(s) 977, 1151
BtsCI GGATG 4 cut(s) 454, 675, 1136, 1238
BveI ACCTGC 1 cut(s) 284
Cac8I GCNNGC 4 cut(s) 73, 760, 908, 972
CciI TCATGA 1 cut(s) 772
CfoI GCGC 5 cut(s) 417, 687, 735, 976, 1094
Cfr13I GGNCC 3 cut(s) 350, 1064, 1227
Cfr42I CCGCGG 1 cut(s) 980
CseI GACGC 1 cut(s) 293
Csp6I GTAC 4 cut(s) 141, 258, 965, 1013
CviAII CATG 4 cut(s) 301, 437, 773, 845
CviQI GTAC 4 cut(s) 141, 258, 965, 1013
DdeI CTNAG 2 cut(s) 554, 614
DinI GGCGCC 1 cut(s) 416
DpnI GATC 4 cut(s) 240, 441, 698, 921
DpnII GATC 4 cut(s) 238, 439, 696, 919
DraIII CACNNNGTG 1 cut(s) 1259
DriI GACNNNNNGTC 1 cut(s) 939
EaeI YGGCCR 2 cut(s) 1084, 1123
EagI CGGCCG 1 cut(s) 1084
Eam1104I CTCTTC 1 cut(s) 204
Eam1105I GACNNNNNGTC 1 cut(s) 939
EarI CTCTTC 1 cut(s) 204
Ecl136II GAGCTC 1 cut(s) 1021
EclXI CGGCCG 1 cut(s) 1084
Eco130I CCWWGG 1 cut(s) 1126
Eco24I GRGCYC 2 cut(s) 333, 1023
Eco47I GGWCC 2 cut(s) 350, 1227
Eco47III AGCGCT 1 cut(s) 1093
Eco52I CGGCCG 1 cut(s) 1084
Eco53kI GAGCTC 1 cut(s) 1021
Eco57I CTGAAG 2 cut(s) 255, 488
Eco88I CYCGRG 1 cut(s) 1059
EcoICRI GAGCTC 1 cut(s) 1021
EcoNI CCTNNNNNAGG 1 cut(s) 1215
EcoT14I CCWWGG 1 cut(s) 1126
EcoT38I GRGCYC 2 cut(s) 333, 1023
EgeI GGCGCC 1 cut(s) 416
EheI GGCGCC 1 cut(s) 416
ErhI CCWWGG 1 cut(s) 1126
FaeI CATG 4 cut(s) 304, 440, 776, 848
FalI AAGNNNNNCTT 6 cut(s) 121, 153, 751, 783, 1233, 1265
FaqI GGGAC 1 cut(s) 632
FatI CATG 4 cut(s) 300, 436, 772, 844
FbaI TGATCA 1 cut(s) 696
FokI GGATG 4 cut(s) 461, 682, 1143, 1245
FriOI GRGCYC 2 cut(s) 333, 1023
FspBI CTAG 5 cut(s) 294, 525, 809, 1070, 1173
FspI TGCGCA 1 cut(s) 734
GlaI GCGC 5 cut(s) 416, 686, 734, 975, 1093
GsuI CTGGAG 1 cut(s) 236
HaeII RGCGCY 3 cut(s) 418, 977, 1095
HaeIII GGCC 4 cut(s) 1031, 1066, 1086, 1125
HapII CCGG 4 cut(s) 688, 944, 1032, 1230
HgaI GACGC 1 cut(s) 293
HhaI GCGC 5 cut(s) 417, 687, 735, 976, 1094
Hin1I GRCGYC 1 cut(s) 415
Hin1II CATG 4 cut(s) 304, 440, 776, 848
Hin6I GCGC 5 cut(s) 415, 685, 733, 974, 1092
HinP1I GCGC 5 cut(s) 415, 685, 733, 974, 1092
HincII GTYRAC 1 cut(s) 1205
HindII GTYRAC 1 cut(s) 1205
HindIII AAGCTT 2 cut(s) 392, 551
HinfI GANTC 3 cut(s) 620, 1003, 1035
HpaII CCGG 4 cut(s) 688, 944, 1032, 1230
HphI GGTGA 2 cut(s) 322, 1155
Hpy166II GTNNAC 2 cut(s) 313, 1205
Hpy188I TCNGA 4 cut(s) 541, 634, 855, 1046
Hpy188III TCNNGA 6 cut(s) 125, 233, 773, 917, 944, 1230
Hpy8I GTNNAC 2 cut(s) 313, 1205
HpyAV CCTTC 8 cut(s) 46, 108, 313, 469, 490, 824, 1170, 1180
HpyCH4III ACNGT 1 cut(s) 1155
HpyF10VI GCNNNNNNNGC 6 cut(s) 497, 835, 903, 976, 988, 997
HpyF3I CTNAG 2 cut(s) 554, 614
Hsp92I GRCGYC 1 cut(s) 415
Hsp92II CATG 4 cut(s) 304, 440, 776, 848
HspAI GCGC 5 cut(s) 415, 685, 733, 974, 1092
KasI GGCGCC 1 cut(s) 414
Kpn2I TCCGGA 2 cut(s) 943, 1229
Ksp22I TGATCA 1 cut(s) 696
KspI CCGCGG 1 cut(s) 980
Kzo9I GATC 4 cut(s) 238, 439, 696, 919
LguI GCTCTTC 1 cut(s) 204
LmnI GCTCC 1 cut(s) 528
Lsp1109I GCAGC 9 cut(s) 204, 518, 570, 880, 909, 912, 915, 1101, 1189
LweI GCATC 4 cut(s) 151, 478, 570, 660
MaeI CTAG 5 cut(s) 294, 525, 809, 1070, 1173
MalI GATC 4 cut(s) 240, 441, 698, 921
MboI GATC 4 cut(s) 238, 439, 696, 919
MboII GAAGA 7 cut(s) 20, 106, 221, 248, 481, 484, 505
MfeI CAATTG 2 cut(s) 106, 783
MhlI GDGCHC 3 cut(s) 333, 645, 1023
MluCI AATT 8 cut(s) 6, 17, 66, 106, 509, 737, 783, 797
Mly113I GGCGCC 1 cut(s) 415
MlyI GAGTC 2 cut(s) 614, 1044
MmeI TCCRAC 3 cut(s) 426, 701, 773
MroI TCCGGA 2 cut(s) 943, 1229
MseI TTAA 4 cut(s) 83, 228, 396, 825
MslI CAYNNNNRTG 1 cut(s) 44
MspA1I CMGCKG 2 cut(s) 748, 979
MspCI CTTAAG 1 cut(s) 395
MspI CCGG 4 cut(s) 688, 944, 1032, 1230
MspR9I CCNGG 1 cut(s) 689
MunI CAATTG 2 cut(s) 106, 783
MvnI CGCG 1 cut(s) 979
MwoI GCNNNNNNNGC 6 cut(s) 497, 835, 903, 976, 988, 997
NarI GGCGCC 1 cut(s) 415
NciI CCSGG 1 cut(s) 689
NdeII GATC 4 cut(s) 238, 439, 696, 919
NlaIII CATG 4 cut(s) 304, 440, 776, 848
NlaIV GGNNCC 2 cut(s) 291, 416
NmeAIII GCCGAG 1 cut(s) 1101
NsbI TGCGCA 1 cut(s) 734
PaeR7I CTCGAG 1 cut(s) 1059
PagI TCATGA 1 cut(s) 772
PciSI GCTCTTC 1 cut(s) 204
PfeI GAWTC 1 cut(s) 1003
PleI GAGTC 2 cut(s) 614, 1043
PluTI GGCGCC 1 cut(s) 418
PpsI GAGTC 2 cut(s) 614, 1043
PsiI TTATAA 2 cut(s) 65, 264
Psp124BI GAGCTC 1 cut(s) 1023
PspN4I GGNNCC 2 cut(s) 291, 416
PspPI GGNCC 3 cut(s) 350, 1064, 1227
PspXI VCTCGAGB 1 cut(s) 1059
PvuII CAGCTG 1 cut(s) 748
RsaI GTAC 4 cut(s) 142, 259, 966, 1014
RsaNI GTAC 4 cut(s) 141, 258, 965, 1013
RseI CAYNNNNRTG 1 cut(s) 44
SacI GAGCTC 1 cut(s) 1023
SacII CCGCGG 1 cut(s) 980
SapI GCTCTTC 1 cut(s) 204
SaqAI TTAA 4 cut(s) 83, 228, 396, 825
Sau3AI GATC 4 cut(s) 238, 439, 696, 919
Sau96I GGNCC 3 cut(s) 350, 1064, 1227
ScaI AGTACT 2 cut(s) 259, 966
SchI GAGTC 2 cut(s) 614, 1044
ScrFI CCNGG 1 cut(s) 689
SduI GDGCHC 3 cut(s) 333, 645, 1023
SfaNI GCATC 4 cut(s) 151, 478, 570, 660
SfoI GGCGCC 1 cut(s) 416
Sfr274I CTCGAG 1 cut(s) 1059
Sfr303I CCGCGG 1 cut(s) 980
SgrBI CCGCGG 1 cut(s) 980
SinI GGWCC 2 cut(s) 350, 1227
SlaI CTCGAG 1 cut(s) 1059
SmiMI CAYNNNNRTG 1 cut(s) 44
SmlI CTYRAG 3 cut(s) 395, 1022, 1059
SmoI CTYRAG 3 cut(s) 395, 1022, 1059
Sse9I AATT 8 cut(s) 6, 17, 66, 106, 509, 737, 783, 797
SsiI CCGC 7 cut(s) 479, 521, 830, 866, 977, 979, 1087
SspDI GGCGCC 1 cut(s) 414
SspMI CTAG 5 cut(s) 294, 525, 809, 1070, 1173
SstI GAGCTC 1 cut(s) 1023
StyD4I CCNGG 1 cut(s) 687
StyI CCWWGG 1 cut(s) 1126
TaaI ACNGT 1 cut(s) 1155
TaqI TCGA 2 cut(s) 705, 1060
TaqII GACCGA 2 cut(s) 338, 767
TasI AATT 8 cut(s) 6, 17, 66, 106, 509, 737, 783, 797
TatI WGTACW 4 cut(s) 140, 257, 964, 1012
TauI GCSGC 5 cut(s) 524, 832, 979, 982, 1089
TfiI GAWTC 1 cut(s) 1003
Tru1I TTAA 4 cut(s) 83, 228, 396, 825
Tru9I TTAA 4 cut(s) 83, 228, 396, 825
TseI GCWGC 9 cut(s) 192, 531, 558, 868, 897, 900, 903, 1089, 1177
TspDTI ATGAA 2 cut(s) 468, 589
TspGWI ACGGA 1 cut(s) 378
Vha464I CTTAAG 1 cut(s) 395
VpaK11BI GGWCC 2 cut(s) 350, 1227
XagI CCTNNNNNAGG 1 cut(s) 1215
XcmI CCANNNNNNNNNTGG 2 cut(s) 182, 789
XhoI CTCGAG 1 cut(s) 1059
XspI CTAG 5 cut(s) 294, 525, 809, 1070, 1173
ZrmI AGTACT 2 cut(s) 259, 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.