Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002199.1

Orthogroup ID

OG0010559

Physical Location & Seq

Genomic Coordinates Forward (+)

40656 .. 41489

Gene Structure 834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002199.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atggggaagggaaaccttataattgcaagcagatggttaatcttgcagaagataaccagcaattgcagaaggagatttcaagaaagtttggcttgtactacttttcctacatttgatgcaagaggtttccatcaagttcgtggtggcagctcatcattgacagaagagctggagggtattcttaatcctgaagatcaagggagggagagtagtactaactctatgacctgcatttacaaggttcctagcaccatgcgtcaggtgaacaggaaggcttacgagcccaacattgtgtccatcggtccttaccatcacggagttgaaagcctacaagaaatggagaagcttaagcacacatactttcggcgcctctttcaaccaaactaccatgatcggttggatgatgaagtagtgtcgctgaagaagaaggcggtagatgatgcgaagaaggcaatggaggaattggaggtggcggctaggagctgctactcggaacaatccaagcttagcagcaaggcgtttgtaaagatgatgctgattgatggttgcttcattatagggttgctcagggactcattgcaatccgattttgagcacacaccctccatcattcaaaggtggatgcttccaattctgcgccaggatttgatcaagctcgaaaatcagcttcccctctttgtcttgcgcaaattatttcagctgaccaaagcaagcactacttgtcatgagaaaccaattccaagttgggaattggaatcactagcccttggcttctttgagccgctactgcgaggacatgatgttctgaccgaagcgaagcactacttatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

277

Amino Acids

31.85

Weight (kDa)

8.46

Isoelectric Point (pI)

60.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010559)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g30280 FvH4_6g34750
malus_domestica	MD04G1048500.v1.1 MD04G1048600.v1.1
prunus_persica	Prupe.1G205900_v2.0.a1 Prupe.3G091600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0145481 RchiOBHm_Chr5g0054041
rosa_laevigata	RLG00000020145
rosa_multiflora	Rmu_sc0000092.1_g000004 Rmu_sc0002199.1_g000009
rosa_roxburghii	Rroxscaffold_152G00434520 Rroxscaffold_152G00434540 Rroxscaffold_2G00100720
rosa_rugosa	Rorug02G0392200
rosa_samantha	Rh2AG445600 Rh2AG596000 Rh2BG457000 Rh2CG432100 Rh2DG466700
rosa_wichuraiana	Rw2G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	20
Acc16I	TGCGCA	1 cut(s)	686
Acc36I	ACCTGC	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	366
AciI	CCGC	3 cut(s)	431, 473, 782
AcuI	CTGAAG	2 cut(s)	210, 440
AcyI	GRCGYC	1 cut(s)	367
AfaI	GTAC	2 cut(s)	97, 214
AflII	CTTAAG	1 cut(s)	347
AgsI	TTSAA	4 cut(s)	80, 323, 377, 614
AjnI	CCWGG	1 cut(s)	639
AloI	GAACNNNNNNTCC	2 cut(s)	786, 818
AluBI	AGCT	8 cut(s)	150, 169, 346, 483, 505, 655, 667, 700
AluI	AGCT	8 cut(s)	150, 169, 346, 483, 505, 655, 667, 700
Alw21I	GWGCWC	1 cut(s)	597
ApeKI	GCWGC	3 cut(s)	147, 483, 510
AspLEI	GCGC	3 cut(s)	369, 639, 687
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	366
BanII	GRGCYC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	597
BbvI	GCAGC	3 cut(s)	159, 470, 522
BccI	CCATC	6 cut(s)	27, 138, 305, 318, 536, 614
BciT130I	CCWGG	1 cut(s)	641
BclI	TGATCA	1 cut(s)	648
BfaI	CTAG	3 cut(s)	246, 477, 761
BfoI	RGCGCY	1 cut(s)	370
BfrI	CTTAAG	1 cut(s)	347
BfuAI	ACCTGC	1 cut(s)	236
BisI	GCNGC	5 cut(s)	148, 474, 484, 511, 782
BlpI	GCTNAGC	1 cut(s)	506
BlsI	GCNGC	5 cut(s)	149, 475, 485, 512, 783
BmcAI	AGTACT	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	641
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	2 cut(s)	243, 368
BmrFI	CCNGG	1 cut(s)	641
BmsI	GCATC	4 cut(s)	106, 430, 522, 612
BpmI	CTGGAG	1 cut(s)	191
Bpu10I	CCTNAGC	1 cut(s)	566
Bpu1102I	GCTNAGC	1 cut(s)	506
BsaHI	GRCGYC	1 cut(s)	367
BsaJI	CCNNGG	1 cut(s)	766
BsaXI	ACNNNNNCTCC	4 cut(s)	193, 223, 587, 617
Bse3DI	GCAATG	2 cut(s)	459, 575
BseBI	CCWGG	1 cut(s)	641
BseDI	CCNNGG	1 cut(s)	766
BseGI	GGATG	2 cut(s)	406, 627
BseMI	GCAATG	2 cut(s)	459, 575
BseMII	CTCAG	1 cut(s)	580
BseXI	GCAGC	3 cut(s)	159, 470, 522
BshNI	GGYRCC	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	597
BslFI	GGGAC	1 cut(s)	584
BsmFI	GGGAC	1 cut(s)	584
Bsp1286I	GDGCHC	2 cut(s)	285, 597
Bsp143I	GATC	3 cut(s)	193, 391, 648
Bsp1720I	GCTNAGC	1 cut(s)	506
BspACI	CCGC	3 cut(s)	431, 473, 782
BspCNI	CTCAG	1 cut(s)	579
BspHI	TCATGA	2 cut(s)	724, 830
BspLI	GGNNCC	2 cut(s)	243, 368
BspMI	ACCTGC	1 cut(s)	236
BspQI	GCTCTTC	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	366
BspTI	CTTAAG	1 cut(s)	347
BsrDI	GCAATG	2 cut(s)	459, 575
BssECI	CCNNGG	1 cut(s)	766
BssMI	GATC	3 cut(s)	193, 391, 648
BssNI	GRCGYC	1 cut(s)	367
BssT1I	CCWWGG	1 cut(s)	766
Bst2UI	CCWGG	1 cut(s)	641
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	1 cut(s)	367
BstAFI	CTTAAG	1 cut(s)	347
BstC8I	GCNNGC	2 cut(s)	28, 712
BstDEI	CTNAG	2 cut(s)	506, 566
BstF5I	GGATG	2 cut(s)	406, 627
BstH2I	RGCGCY	1 cut(s)	370
BstHHI	GCGC	3 cut(s)	369, 639, 687
BstKTI	GATC	3 cut(s)	196, 394, 651
BstMBI	GATC	3 cut(s)	193, 391, 648
BstMWI	GCNNNNNNNGC	2 cut(s)	449, 787
BstNI	CCWGG	1 cut(s)	641
BstSCI	CCNGG	1 cut(s)	639
BstV1I	GCAGC	3 cut(s)	159, 470, 522
BtsCI	GGATG	2 cut(s)	406, 627
BveI	ACCTGC	1 cut(s)	236
Cac8I	GCNNGC	2 cut(s)	28, 712
CciI	TCATGA	2 cut(s)	724, 830
CfoI	GCGC	3 cut(s)	369, 639, 687
Cfr13I	GGNCC	1 cut(s)	302
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	2 cut(s)	96, 213
CviAII	CATG	5 cut(s)	253, 389, 725, 797, 831
CviQI	GTAC	2 cut(s)	96, 213
DdeI	CTNAG	2 cut(s)	506, 566
DinI	GGCGCC	1 cut(s)	368
DpnI	GATC	3 cut(s)	195, 393, 650
DpnII	GATC	3 cut(s)	193, 391, 648
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	766
Eco24I	GRGCYC	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	302
Eco57I	CTGAAG	2 cut(s)	210, 440
EcoRII	CCWGG	1 cut(s)	639
EcoT14I	CCWWGG	1 cut(s)	766
EcoT38I	GRGCYC	1 cut(s)	285
EgeI	GGCGCC	1 cut(s)	368
EheI	GGCGCC	1 cut(s)	368
ErhI	CCWWGG	1 cut(s)	766
FaeI	CATG	5 cut(s)	256, 392, 728, 800, 834
FaiI	YATR	9 cut(s)	20, 224, 254, 358, 390, 557, 726, 798, 832
FalI	AAGNNNNNCTT	5 cut(s)	76, 108, 703, 735, 809
FaqI	GGGAC	1 cut(s)	584
FatI	CATG	5 cut(s)	252, 388, 724, 796, 830
FbaI	TGATCA	1 cut(s)	648
Fnu4HI	GCNGC	5 cut(s)	148, 474, 484, 511, 782
FokI	GGATG	2 cut(s)	413, 634
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	5 cut(s)	148, 474, 484, 511, 782
FspBI	CTAG	3 cut(s)	246, 477, 761
FspI	TGCGCA	1 cut(s)	686
GlaI	GCGC	3 cut(s)	368, 638, 686
GluI	GCNGC	5 cut(s)	148, 474, 484, 511, 782
GsuI	CTGGAG	1 cut(s)	191
HaeII	RGCGCY	1 cut(s)	370
HgaI	GACGC	1 cut(s)	245
HhaI	GCGC	3 cut(s)	369, 639, 687
Hin1I	GRCGYC	1 cut(s)	367
Hin1II	CATG	5 cut(s)	256, 392, 728, 800, 834
Hin6I	GCGC	3 cut(s)	367, 637, 685
HinP1I	GCGC	3 cut(s)	367, 637, 685
HindIII	AAGCTT	2 cut(s)	344, 503
HinfI	GANTC	2 cut(s)	572, 755
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	3 cut(s)	493, 586, 807
Hpy188III	TCNNGA	4 cut(s)	80, 188, 725, 831
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	4 cut(s)	63, 265, 421, 442
HpyCH4V	TGCA	6 cut(s)	26, 46, 66, 119, 231, 580
HpyF10VI	GCNNNNNNNGC	2 cut(s)	449, 787
HpyF3I	CTNAG	2 cut(s)	506, 566
Hsp92I	GRCGYC	1 cut(s)	367
Hsp92II	CATG	5 cut(s)	256, 392, 728, 800, 834
HspAI	GCGC	3 cut(s)	367, 637, 685
KasI	GGCGCC	1 cut(s)	366
Ksp22I	TGATCA	1 cut(s)	648
Kzo9I	GATC	3 cut(s)	193, 391, 648
LguI	GCTCTTC	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	480
LpnPI	CCDG	9 cut(s)	70, 155, 201, 241, 245, 253, 553, 626, 653
Lsp1109I	GCAGC	3 cut(s)	159, 470, 522
LweI	GCATC	4 cut(s)	106, 430, 522, 612
MaeI	CTAG	3 cut(s)	246, 477, 761
MalI	GATC	3 cut(s)	195, 393, 650
MboI	GATC	3 cut(s)	193, 391, 648
MboII	GAAGA	6 cut(s)	61, 176, 203, 433, 436, 457
MfeI	CAATTG	1 cut(s)	61
MhlI	GDGCHC	2 cut(s)	285, 597
MluCI	AATT	7 cut(s)	21, 61, 461, 630, 689, 735, 749
Mly113I	GGCGCC	1 cut(s)	367
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	9 cut(s)	116, 166, 195, 380, 451, 460, 613, 683, 785
MseI	TTAA	3 cut(s)	38, 183, 348
MspA1I	CMGCKG	1 cut(s)	700
MspCI	CTTAAG	1 cut(s)	347
MspR9I	CCNGG	1 cut(s)	641
MunI	CAATTG	1 cut(s)	61
MvaI	CCWGG	1 cut(s)	641
MwoI	GCNNNNNNNGC	2 cut(s)	449, 787
NarI	GGCGCC	1 cut(s)	367
NdeII	GATC	3 cut(s)	193, 391, 648
NlaIII	CATG	5 cut(s)	256, 392, 728, 800, 834
NlaIV	GGNNCC	2 cut(s)	243, 368
NsbI	TGCGCA	1 cut(s)	686
PagI	TCATGA	2 cut(s)	724, 830
PciSI	GCTCTTC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	755
PkrI	GCNGC	5 cut(s)	149, 475, 485, 512, 783
PleI	GAGTC	1 cut(s)	566
PluTI	GGCGCC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	566
PsiI	TTATAA	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	639
PspGI	CCWGG	1 cut(s)	639
PspN4I	GGNNCC	2 cut(s)	243, 368
PspPI	GGNCC	1 cut(s)	302
PvuII	CAGCTG	1 cut(s)	700
RsaI	GTAC	2 cut(s)	97, 214
RsaNI	GTAC	2 cut(s)	96, 213
SapI	GCTCTTC	1 cut(s)	159
SaqAI	TTAA	3 cut(s)	38, 183, 348
SatI	GCNGC	5 cut(s)	148, 474, 484, 511, 782
Sau3AI	GATC	3 cut(s)	193, 391, 648
Sau96I	GGNCC	1 cut(s)	302
ScaI	AGTACT	1 cut(s)	214
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	1 cut(s)	641
SduI	GDGCHC	2 cut(s)	285, 597
SfaNI	GCATC	4 cut(s)	106, 430, 522, 612
SfoI	GGCGCC	1 cut(s)	368
SinI	GGWCC	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	7 cut(s)	21, 61, 461, 630, 689, 735, 749
SsiI	CCGC	3 cut(s)	431, 473, 782
SspDI	GGCGCC	1 cut(s)	366
SspMI	CTAG	3 cut(s)	246, 477, 761
StyD4I	CCNGG	1 cut(s)	639
StyI	CCWWGG	1 cut(s)	766
TaqI	TCGA	1 cut(s)	657
TaqII	GACCGA	2 cut(s)	290, 824
TasI	AATT	7 cut(s)	21, 61, 461, 630, 689, 735, 749
TatI	WGTACW	2 cut(s)	95, 212
TauI	GCSGC	2 cut(s)	476, 784
TfiI	GAWTC	1 cut(s)	755
Tru1I	TTAA	3 cut(s)	38, 183, 348
Tru9I	TTAA	3 cut(s)	38, 183, 348
TseI	GCWGC	3 cut(s)	147, 483, 510
TspDTI	ATGAA	2 cut(s)	420, 541
TspGWI	ACGGA	1 cut(s)	330
Vha464I	CTTAAG	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	302
XcmI	CCANNNNNNNNNTGG	2 cut(s)	137, 741
XspI	CTAG	3 cut(s)	246, 477, 761
ZrmI	AGTACT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.