Prupe.1G228600_v2.0.a1

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011253
Physical Location & Seq
Forward (+)
24158499 .. 24161722
3224 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G228600.1

Sequence Viewer

Length: 1158 bp
ATGCCGGGTTTTGTGAGTGAAAATAAGAGATTCAAAGAACCAAACATGTGTTTATCCAATTTGGTCATGCAAGATACACCAATTCGTTCAAAAAGCTATCGTAGTTTGACTCCTCTAGCCGTAGATGATTTTGACATCCCCATTCTACCGGGACTGCCAGATGACATAGCAAAACATTGCCTTGCTCTTGTTCCTCGTTCCAACTTCCCTGTTATGAGTGGTGTGTGTAAGAAATGGAGGCATTTTATTCAAAGCAAAGAACTTATCACTGTGCGACAACTAGCTGGGGTTCTTGAGGAGTGGCTCTATGTGTTAACAACAGATACTCAAGGAAATCCAAGCCACTGGGAGGTTTTAGATTGCCTCGGATGCAAGCACCATATTCTTCCTTCAATGCCTGGTCCAATGAGATCTGGGTTTGGGGTGGTAGTTCTCAGTGGAAAGCTTCTTGTCATTGGTGGATATTCTGTGACCAGCGGGACCAGTGTTGCATCAGAAGATGTTTACCAATATGATTCTTGCCTCAACAGGTGGGGAAAGTTAGCAAGCCTGAATGTGGCTCGACATGACTTTGCTTGTGCAGAAGTGGGTGGAATGATCTACGCAGTTGGAGGATTTGGTATAGATGGGAGCAGTCTCTCTAGTGCCGAGGTGTACAATCCTGACACTGATACTTGGACCCTGATTGAGAGTCTTCGCCGCCCACGATATGGTTGCTTTGCCTGTGGATTTGAAGGAAGGCTGTATGTTATGGGCGGAAGGTCAAGCTTCACTATTGGAAATTCAAAGTTTGTTGATGTCTATGACCCCGAGAAGCACACTTGGTGTGAGATGAAGAATGGTTGTGTCATGGTCACTGCTCATGCTGTGCTGGAAAAGAAGCTATTCTGTTTGGAGTGGAAGAACCAGCGGAAGCTTTCAATTTACAATCCAGAGGACAATTCATGGGAGATGGTACAGATCCCATTGACTGGAAGCACAAGTATAAAGTTCCGGTTTGGGATACTAGGTGAGAAACTTCTGCTATTTTCACTTGAGGAGGAACCTGGTTACCGTACTTTGTTGTATGATCCAAATGCAACCCCAGGATCAGAGTGGCAGACTTCTGAGGTAAAGCCGTCTGGTCCATGCTTCTGCTGTGTTACGATCAAGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Kelch_1

Protein Analysis

386

Amino Acids

42.88

Weight (kDa)

6.27

Isoelectric Point (pI)

38.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011253)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67480 AT1G67480 AT1G67480
fragaria_vesca FvH4_4g23951 FvH4_4g23951
malus_domestica MD13G1117000.v1.1 MD16G1117600.v1.1
prunus_persica Prupe.1G228600_v2.0.a1
pyrus_communis pycom13g10150
rosa_chinensis RchiOBHm_Chr4g0430611
rosa_laevigata RLG00000006963
rosa_multiflora Rmu_co8108234.1_g000001
rosa_roxburghii Rroxscaffold_5G00372360
rosa_rugosa Rorug04G0244800 Rorug04G0244800
rosa_samantha Rh4AG300700 Rh4BG307800 Rh4CG324900 Rh4DG305400
rosa_wichuraiana Rw4G026090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 710, 971
AciI CCGC 4 cut(s) 477, 700, 756, 910
AclWI GGATC 3 cut(s) 955, 1064, 1096
AcsI RAATTY 1 cut(s) 781
AdeI CACNNNGTG 1 cut(s) 825
AfaI GTAC 3 cut(s) 656, 957, 1057
AfiI CCNNNNNNNGG 4 cut(s) 349, 556, 710, 971
AflIII ACRYGT 1 cut(s) 45
AgsI TTSAA 7 cut(s) 34, 90, 251, 393, 734, 786, 921
AjnI CCWGG 3 cut(s) 397, 1045, 1084
AluBI AGCT 6 cut(s) 96, 284, 445, 768, 883, 916
AluI AGCT 6 cut(s) 96, 284, 445, 768, 883, 916
Alw26I GTCTC 1 cut(s) 641
AlwI GGATC 3 cut(s) 955, 1064, 1096
Ama87I CYCGRG 1 cut(s) 809
ApoI RAATTY 1 cut(s) 781
Asp700I GAANNNNTTC 1 cut(s) 884
AspS9I GGNCC 4 cut(s) 401, 480, 678, 1124
AsuC2I CCSGG 2 cut(s) 6, 150
AsuHPI GGTGA 1 cut(s) 1022
AvaI CYCGRG 1 cut(s) 809
AvaII GGWCC 4 cut(s) 401, 480, 678, 1124
BbsI GAAGAC 1 cut(s) 686
BccI CCATC 2 cut(s) 620, 946
BceAI ACGGC 2 cut(s) 104, 1102
BcgI CGANNNNNNTGC 2 cut(s) 696, 730
BciT130I CCWGG 3 cut(s) 399, 1047, 1086
BciVI GTATCC 1 cut(s) 996
BcnI CCSGG 2 cut(s) 6, 150
BcoDI GTCTC 1 cut(s) 641
BfaI CTAG 4 cut(s) 116, 281, 642, 1007
BfuI GTATCC 1 cut(s) 996
BglII AGATCT 1 cut(s) 410
BisI GCNGC 1 cut(s) 700
BlsI GCNGC 1 cut(s) 701
Bme1390I CCNGG 5 cut(s) 6, 150, 399, 1047, 1086
Bme18I GGWCC 4 cut(s) 401, 480, 678, 1124
BmeT110I CYCGRG 1 cut(s) 809
BmgT120I GGNCC 4 cut(s) 401, 480, 678, 1124
BmiI GGNNCC 3 cut(s) 481, 680, 1044
BmrFI CCNGG 5 cut(s) 6, 150, 399, 1047, 1086
BmrI ACTGGG 1 cut(s) 355
BmsI GCATC 2 cut(s) 359, 500
BmuI ACTGGG 1 cut(s) 355
BpiI GAAGAC 1 cut(s) 686
BpuEI CTTGAG 3 cut(s) 312, 314, 1055
BpuMI CCSGG 2 cut(s) 6, 150
BsaJI CCNNGG 3 cut(s) 364, 648, 1084
BsaWI WCCGGW 1 cut(s) 993
Bsc4I CCNNNNNNNGG 4 cut(s) 349, 556, 710, 971
Bse1I ACTGG 3 cut(s) 350, 483, 976
Bse3DI GCAATG 1 cut(s) 175
BseBI CCWGG 3 cut(s) 399, 1047, 1086
BseDI CCNNGG 3 cut(s) 364, 648, 1084
BseGI GGATG 2 cut(s) 135, 374
BseLI CCNNNNNNNGG 4 cut(s) 349, 556, 710, 971
BseMI GCAATG 1 cut(s) 175
BseMII CTCAG 2 cut(s) 448, 1098
BseNI ACTGG 3 cut(s) 350, 483, 976
BseRI GAGGAG 3 cut(s) 102, 311, 1052
BseYI CCCAGC 1 cut(s) 284
BsgI GTGCAG 1 cut(s) 600
BsiHKCI CYCGRG 1 cut(s) 809
BsiSI CCGG 3 cut(s) 5, 149, 994
BslFI GGGAC 2 cut(s) 165, 493
BslI CCNNNNNNNGG 4 cut(s) 349, 556, 710, 971
BsmAI GTCTC 1 cut(s) 641
BsmFI GGGAC 2 cut(s) 165, 493
BsoBI CYCGRG 1 cut(s) 809
Bsp1407I TGTACA 1 cut(s) 654
Bsp143I GATC 6 cut(s) 410, 597, 960, 1069, 1088, 1146
BspACI CCGC 4 cut(s) 477, 700, 756, 910
BspCNI CTCAG 2 cut(s) 447, 1099
BspLI GGNNCC 3 cut(s) 481, 680, 1044
BspPI GGATC 3 cut(s) 955, 1064, 1096
BsrDI GCAATG 1 cut(s) 175
BsrGI TGTACA 1 cut(s) 654
BsrI ACTGG 3 cut(s) 350, 483, 976
BssECI CCNNGG 3 cut(s) 364, 648, 1084
BssMI GATC 6 cut(s) 410, 597, 960, 1069, 1088, 1146
Bst2UI CCWGG 3 cut(s) 399, 1047, 1086
Bst4CI ACNGT 2 cut(s) 271, 1055
BstAUI TGTACA 1 cut(s) 654
BstC8I GCNNGC 2 cut(s) 374, 547
BstDEI CTNAG 2 cut(s) 434, 1107
BstEII GGTNACC 1 cut(s) 1049
BstF5I GGATG 2 cut(s) 135, 374
BstKTI GATC 6 cut(s) 413, 600, 963, 1072, 1091, 1149
BstMAI GTCTC 1 cut(s) 641
BstMBI GATC 6 cut(s) 410, 597, 960, 1069, 1088, 1146
BstMWI GCNNNNNNNGC 1 cut(s) 369
BstNI CCWGG 3 cut(s) 399, 1047, 1086
BstNSI RCATGY 1 cut(s) 49
BstPI GGTNACC 1 cut(s) 1049
BstSCI CCNGG 5 cut(s) 4, 148, 397, 1045, 1084
BstV2I GAAGAC 1 cut(s) 686
BstX2I RGATCY 2 cut(s) 410, 960
BstXI CCANNNNNNTGG 1 cut(s) 345
BstYI RGATCY 2 cut(s) 410, 960
BsuI GTATCC 1 cut(s) 996
BtsCI GGATG 2 cut(s) 135, 374
BtsI GCAGTG 1 cut(s) 855
BtsIMutI CAGTG 6 cut(s) 267, 343, 442, 490, 666, 855
Cac8I GCNNGC 2 cut(s) 374, 547
Cfr13I GGNCC 4 cut(s) 401, 480, 678, 1124
CsiI ACCWGGT 1 cut(s) 1045
Csp6I GTAC 3 cut(s) 655, 956, 1056
CviAII CATG 7 cut(s) 46, 67, 566, 850, 863, 945, 1128
CviQI GTAC 3 cut(s) 655, 956, 1056
DdeI CTNAG 2 cut(s) 434, 1107
DpnI GATC 6 cut(s) 412, 599, 962, 1071, 1090, 1148
DpnII GATC 6 cut(s) 410, 597, 960, 1069, 1088, 1146
DraIII CACNNNGTG 1 cut(s) 825
EciI GGCGGA 1 cut(s) 771
Eco47I GGWCC 4 cut(s) 401, 480, 678, 1124
Eco88I CYCGRG 1 cut(s) 809
Eco91I GGTNACC 1 cut(s) 1049
EcoO65I GGTNACC 1 cut(s) 1049
EcoRII CCWGG 3 cut(s) 397, 1045, 1084
FaeI CATG 7 cut(s) 49, 70, 569, 853, 866, 948, 1131
FaqI GGGAC 2 cut(s) 165, 493
FatI CATG 7 cut(s) 45, 66, 565, 849, 862, 944, 1127
FauI CCCGC 1 cut(s) 470
Fnu4HI GCNGC 1 cut(s) 700
FokI GGATG 2 cut(s) 122, 381
Fsp4HI GCNGC 1 cut(s) 700
FspBI CTAG 4 cut(s) 116, 281, 642, 1007
GluI GCNGC 1 cut(s) 700
GsaI CCCAGC 1 cut(s) 288
HapII CCGG 3 cut(s) 5, 149, 994
Hin1II CATG 7 cut(s) 49, 70, 569, 853, 866, 948, 1131
HincII GTYRAC 1 cut(s) 315
HindII GTYRAC 1 cut(s) 315
HindIII AAGCTT 3 cut(s) 443, 766, 914
HinfI GANTC 4 cut(s) 30, 109, 515, 691
HpaI GTTAAC 1 cut(s) 315
HpaII CCGG 3 cut(s) 5, 149, 994
HphI GGTGA 1 cut(s) 1022
Hpy166II GTNNAC 3 cut(s) 315, 505, 655
Hpy188I TCNGA 4 cut(s) 368, 496, 1093, 1108
Hpy188III TCNNGA 3 cut(s) 293, 662, 932
Hpy8I GTNNAC 3 cut(s) 315, 505, 655
HpyAV CCTTC 4 cut(s) 399, 728, 732, 753
HpyCH4III ACNGT 2 cut(s) 271, 1055
HpyCH4V TGCA 5 cut(s) 70, 372, 491, 581, 1079
HpyF10VI GCNNNNNNNGC 1 cut(s) 369
HpyF3I CTNAG 2 cut(s) 434, 1107
Hsp92II CATG 7 cut(s) 49, 70, 569, 853, 866, 948, 1131
KspAI GTTAAC 1 cut(s) 315
Kzo9I GATC 6 cut(s) 410, 597, 960, 1069, 1088, 1146
LmnI GCTCC 1 cut(s) 630
LweI GCATC 2 cut(s) 359, 500
MabI ACCWGGT 1 cut(s) 1045
MaeI CTAG 4 cut(s) 116, 281, 642, 1007
MaeIII GTNAC 4 cut(s) 469, 853, 1049, 1141
MalI GATC 6 cut(s) 412, 599, 962, 1071, 1090, 1148
MboI GATC 6 cut(s) 410, 597, 960, 1069, 1088, 1146
MboII GAAGA 5 cut(s) 377, 509, 686, 847, 913
MflI RGATCY 2 cut(s) 410, 960
MluCI AATT 5 cut(s) 58, 81, 781, 921, 940
MlyI GAGTC 2 cut(s) 103, 700
MmeI TCCRAC 2 cut(s) 225, 589
MroXI GAANNNNTTC 1 cut(s) 884
MseI TTAA 1 cut(s) 314
MspA1I CMGCKG 2 cut(s) 477, 910
MspI CCGG 3 cut(s) 5, 149, 994
MspR9I CCNGG 5 cut(s) 6, 150, 399, 1047, 1086
MvaI CCWGG 3 cut(s) 399, 1047, 1086
MwoI GCNNNNNNNGC 1 cut(s) 369
NciI CCSGG 2 cut(s) 6, 150
NdeII GATC 6 cut(s) 410, 597, 960, 1069, 1088, 1146
NlaIII CATG 7 cut(s) 49, 70, 569, 853, 866, 948, 1131
NlaIV GGNNCC 3 cut(s) 481, 680, 1044
NmeAIII GCCGAG 1 cut(s) 673
NmuCI GTSAC 2 cut(s) 469, 853
NspI RCATGY 1 cut(s) 49
PciI ACATGT 1 cut(s) 45
PcsI WCGNNNNNNNCGW 1 cut(s) 703
PdmI GAANNNNTTC 1 cut(s) 884
PfeI GAWTC 2 cut(s) 30, 515
PflMI CCANNNNNTGG 2 cut(s) 710, 971
PkrI GCNGC 1 cut(s) 701
PleI GAGTC 2 cut(s) 103, 699
PpsI GAGTC 2 cut(s) 103, 699
PscI ACATGT 1 cut(s) 45
Psp6I CCWGG 3 cut(s) 397, 1045, 1084
PspEI GGTNACC 1 cut(s) 1049
PspFI CCCAGC 1 cut(s) 284
PspGI CCWGG 3 cut(s) 397, 1045, 1084
PspN4I GGNNCC 3 cut(s) 481, 680, 1044
PspPI GGNCC 4 cut(s) 401, 480, 678, 1124
PsuI RGATCY 2 cut(s) 410, 960
RsaI GTAC 3 cut(s) 656, 957, 1057
RsaNI GTAC 3 cut(s) 655, 956, 1056
SaqAI TTAA 1 cut(s) 314
SatI GCNGC 1 cut(s) 700
Sau3AI GATC 6 cut(s) 410, 597, 960, 1069, 1088, 1146
Sau96I GGNCC 4 cut(s) 401, 480, 678, 1124
SchI GAGTC 2 cut(s) 103, 700
ScrFI CCNGG 5 cut(s) 6, 150, 399, 1047, 1086
SexAI ACCWGGT 1 cut(s) 1045
SfaNI GCATC 2 cut(s) 359, 500
SinI GGWCC 4 cut(s) 401, 480, 678, 1124
SmlI CTYRAG 3 cut(s) 293, 327, 1034
SmoI CTYRAG 3 cut(s) 293, 327, 1034
Sse9I AATT 5 cut(s) 58, 81, 781, 921, 940
SsiI CCGC 4 cut(s) 477, 700, 756, 910
SspMI CTAG 4 cut(s) 116, 281, 642, 1007
StyD4I CCNGG 5 cut(s) 4, 148, 397, 1045, 1084
TaaI ACNGT 2 cut(s) 271, 1055
TaqI TCGA 1 cut(s) 562
TasI AATT 5 cut(s) 58, 81, 781, 921, 940
TatI WGTACW 1 cut(s) 654
TauI GCSGC 1 cut(s) 702
TfiI GAWTC 2 cut(s) 30, 515
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TscAI CASTG 6 cut(s) 274, 350, 442, 490, 673, 862
TseFI GTSAC 2 cut(s) 469, 853
Tsp45I GTSAC 2 cut(s) 469, 853
TspDTI ATGAA 2 cut(s) 848, 933
TspRI CASTG 6 cut(s) 274, 350, 442, 490, 673, 862
Van91I CCANNNNNTGG 2 cut(s) 710, 971
VpaK11BI GGWCC 4 cut(s) 401, 480, 678, 1124
XapI RAATTY 1 cut(s) 781
XceI RCATGY 1 cut(s) 49
XcmI CCANNNNNNNNNTGG 1 cut(s) 1092
XmnI GAANNNNTTC 1 cut(s) 884
XspI CTAG 4 cut(s) 116, 281, 642, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.