Rmu_co8108234.1_g000001

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8108234.1
OG0011253
Physical Location & Seq
Forward (+)
1 .. 465
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8108234.1_g000001.1.cds

Sequence Viewer

Length: 465 bp
attcgccggccaagatatggttgttttgcatgtggatttgagggaaagctgtatgttatgggtggaaggtcaagcttcactattggcaattcaaagtttgttgatgtctacgatcccaagacccacacttggtgtcagatgaagaatggttgtgttatggtcactactcaggctgtgctggaaaagaagctcttctgtatggagtggaagaaccagcggaaactttcaattttcaatcctgaggacaattcctggaagatggtgcaaattccactgacaggaagcactagtattgaatttcgatttgggatactgggtgagaaacttctactgttctcactagagcagaaacctggttaccgtactctgacgtatgatccaaatgcagctccaggatcagagtggcagacttcagaggtagagctgtctggtccgtgcttgtgcactgttagaatcacggtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Kelch_1

Protein Analysis

154

Amino Acids

17.51

Weight (kDa)

8.86

Isoelectric Point (pI)

27.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011253)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67480 AT1G67480 AT1G67480
fragaria_vesca FvH4_4g23951 FvH4_4g23951
malus_domestica MD13G1117000.v1.1 MD16G1117600.v1.1
prunus_persica Prupe.1G228600_v2.0.a1
pyrus_communis pycom13g10150
rosa_chinensis RchiOBHm_Chr4g0430611
rosa_laevigata RLG00000006963
rosa_multiflora Rmu_co8108234.1_g000001
rosa_roxburghii Rroxscaffold_5G00372360
rosa_rugosa Rorug04G0244800 Rorug04G0244800
rosa_samantha Rh4AG300700 Rh4BG307800 Rh4CG324900 Rh4DG305400
rosa_wichuraiana Rw4G026090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 17
AccI GTMKAC 1 cut(s) 108
AciI CCGC 1 cut(s) 217
AclWI GGATC 3 cut(s) 107, 371, 403
AcoI YGGCCR 1 cut(s) 8
AcsI RAATTY 2 cut(s) 267, 296
AcuI CTGAAG 1 cut(s) 396
AdeI CACNNNGTG 2 cut(s) 132, 462
AfaI GTAC 1 cut(s) 364
AfiI CCNNNNNNNGG 3 cut(s) 17, 129, 278
AgsI TTSAA 4 cut(s) 93, 228, 235, 296
AhlI ACTAGT 1 cut(s) 287
AjnI CCWGG 3 cut(s) 251, 352, 391
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AluBI AGCT 5 cut(s) 49, 75, 190, 389, 424
AluI AGCT 5 cut(s) 49, 75, 190, 389, 424
Alw21I GWGCWC 1 cut(s) 446
Alw44I GTGCAC 1 cut(s) 442
AlwI GGATC 3 cut(s) 107, 371, 403
AoxI GGCC 1 cut(s) 8
ApaLI GTGCAC 1 cut(s) 442
ApeKI GCWGC 1 cut(s) 386
ApoI RAATTY 2 cut(s) 267, 296
Asp700I GAANNNNTTC 1 cut(s) 191
AspS9I GGNCC 1 cut(s) 431
AsuHPI GGTGA 1 cut(s) 329
AvaII GGWCC 1 cut(s) 431
AxyI CCTNAGG 1 cut(s) 240
BaeGI GKGCMC 1 cut(s) 446
Bbv12I GWGCWC 1 cut(s) 446
BbvI GCAGC 1 cut(s) 398
BccI CCATC 1 cut(s) 253
BciT130I CCWGG 3 cut(s) 253, 354, 393
BciVI GTATCC 1 cut(s) 303
BcuI ACTAGT 1 cut(s) 287
BfaI CTAG 2 cut(s) 288, 341
BfuI GTATCC 1 cut(s) 303
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
Bme1390I CCNGG 3 cut(s) 253, 354, 393
Bme18I GGWCC 1 cut(s) 431
BmgT120I GGNCC 1 cut(s) 431
BmrFI CCNGG 3 cut(s) 253, 354, 393
BmrI ACTGGG 1 cut(s) 323
BmuI ACTGGG 1 cut(s) 323
BpmI CTGGAG 1 cut(s) 375
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 129, 278
Bse118I RCCGGY 1 cut(s) 6
Bse1I ACTGG 1 cut(s) 318
Bse21I CCTNAGG 1 cut(s) 240
BseBI CCWGG 3 cut(s) 253, 354, 393
BseLI CCNNNNNNNGG 3 cut(s) 17, 129, 278
BseMII CTCAG 2 cut(s) 182, 231
BseNI ACTGG 1 cut(s) 318
BseSI GKGCMC 1 cut(s) 446
BseXI GCAGC 1 cut(s) 398
BshFI GGCC 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 446
BsiSI CCGG 1 cut(s) 7
BslI CCNNNNNNNGG 3 cut(s) 17, 129, 278
BsnI GGCC 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 446
Bsp143I GATC 3 cut(s) 112, 376, 395
BspACI CCGC 1 cut(s) 217
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 2 cut(s) 181, 232
BspPI GGATC 3 cut(s) 107, 371, 403
BspQI GCTCTTC 1 cut(s) 197
BsrFI RCCGGY 1 cut(s) 6
BsrI ACTGG 1 cut(s) 318
BssAI RCCGGY 1 cut(s) 6
BssMI GATC 3 cut(s) 112, 376, 395
Bst2UI CCWGG 3 cut(s) 253, 354, 393
Bst4CI ACNGT 4 cut(s) 333, 362, 448, 460
Bst6I CTCTTC 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 2 cut(s) 168, 240
BstEII GGTNACC 1 cut(s) 356
BstKTI GATC 3 cut(s) 115, 379, 398
BstMBI GATC 3 cut(s) 112, 376, 395
BstNI CCWGG 3 cut(s) 253, 354, 393
BstNSI RCATGY 1 cut(s) 33
BstPI GGTNACC 1 cut(s) 356
BstSCI CCNGG 3 cut(s) 251, 352, 391
BstSLI GKGCMC 1 cut(s) 446
BstV1I GCAGC 1 cut(s) 398
Bsu36I CCTNAGG 1 cut(s) 240
BsuI GTATCC 1 cut(s) 303
BsuRI GGCC 1 cut(s) 10
BtsIMutI CAGTG 2 cut(s) 272, 444
Cac8I GCNNGC 1 cut(s) 8
Cfr10I RCCGGY 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 431
CsiI ACCWGGT 1 cut(s) 352
Csp6I GTAC 1 cut(s) 363
CviAII CATG 1 cut(s) 30
CviJI RGCY 7 cut(s) 10, 49, 75, 173, 190, 389, 424
CviKI_1 RGCY 7 cut(s) 10, 49, 75, 173, 190, 389, 424
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 2 cut(s) 168, 240
DpnI GATC 3 cut(s) 114, 378, 397
DpnII GATC 3 cut(s) 112, 376, 395
DraIII CACNNNGTG 2 cut(s) 132, 462
EaeI YGGCCR 1 cut(s) 8
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 431
Eco57I CTGAAG 1 cut(s) 396
Eco81I CCTNAGG 1 cut(s) 240
Eco91I GGTNACC 1 cut(s) 356
EcoO65I GGTNACC 1 cut(s) 356
EcoRII CCWGG 3 cut(s) 251, 352, 391
FaeI CATG 1 cut(s) 33
FaiI YATR 7 cut(s) 18, 31, 54, 59, 158, 200, 375
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FatI CATG 1 cut(s) 29
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 387
Fsp4HI GCNGC 1 cut(s) 387
FspBI CTAG 2 cut(s) 288, 341
GluI GCNGC 1 cut(s) 387
GsuI CTGGAG 1 cut(s) 375
HaeIII GGCC 1 cut(s) 10
HapII CCGG 1 cut(s) 7
Hin1II CATG 1 cut(s) 33
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 1 cut(s) 453
HpaII CCGG 1 cut(s) 7
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 2 cut(s) 109, 444
Hpy188I TCNGA 4 cut(s) 138, 369, 400, 415
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 2 cut(s) 109, 444
HpyAV CCTTC 1 cut(s) 60
HpyCH4III ACNGT 4 cut(s) 333, 362, 448, 460
HpyCH4IV ACGT 1 cut(s) 371
HpyCH4V TGCA 4 cut(s) 29, 265, 386, 444
HpyF3I CTNAG 2 cut(s) 168, 240
HpySE526I ACGT 1 cut(s) 371
Hsp92II CATG 1 cut(s) 33
KroI GCCGGC 1 cut(s) 6
KroNI GCCGGC 1 cut(s) 8
Kzo9I GATC 3 cut(s) 112, 376, 395
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 1 cut(s) 394
Lsp1109I GCAGC 1 cut(s) 398
MabI ACCWGGT 1 cut(s) 352
MaeI CTAG 2 cut(s) 288, 341
MaeII ACGT 1 cut(s) 371
MaeIII GTNAC 2 cut(s) 160, 356
MalI GATC 3 cut(s) 114, 378, 397
MboI GATC 3 cut(s) 112, 376, 395
MboII GAAGA 4 cut(s) 154, 184, 220, 268
MhlI GDGCHC 1 cut(s) 446
MluCI AATT 5 cut(s) 88, 228, 247, 267, 296
MnlI CCTC 3 cut(s) 34, 235, 409
MroNI GCCGGC 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 191
MspA1I CMGCKG 1 cut(s) 217
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 3 cut(s) 253, 354, 393
MvaI CCWGG 3 cut(s) 253, 354, 393
NaeI GCCGGC 1 cut(s) 8
NdeII GATC 3 cut(s) 112, 376, 395
NgoMIV GCCGGC 1 cut(s) 6
NlaIII CATG 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 197
PdiI GCCGGC 1 cut(s) 8
PdmI GAANNNNTTC 1 cut(s) 191
PfeI GAWTC 1 cut(s) 453
PflMI CCANNNNNTGG 1 cut(s) 17
PfoI TCCNGGA 2 cut(s) 251, 391
PkrI GCNGC 1 cut(s) 388
Psp6I CCWGG 3 cut(s) 251, 352, 391
PspEI GGTNACC 1 cut(s) 356
PspGI CCWGG 3 cut(s) 251, 352, 391
PspPI GGNCC 1 cut(s) 431
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
SapI GCTCTTC 1 cut(s) 197
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 3 cut(s) 112, 376, 395
Sau96I GGNCC 1 cut(s) 431
ScrFI CCNGG 3 cut(s) 253, 354, 393
SduI GDGCHC 1 cut(s) 446
SetI ASST 9 cut(s) 51, 71, 77, 192, 355, 374, 391, 420, 426
SexAI ACCWGGT 1 cut(s) 352
SinI GGWCC 1 cut(s) 431
SpeI ACTAGT 1 cut(s) 287
Sse9I AATT 5 cut(s) 88, 228, 247, 267, 296
SsiI CCGC 1 cut(s) 217
SspMI CTAG 2 cut(s) 288, 341
StyD4I CCNGG 3 cut(s) 251, 352, 391
TaaI ACNGT 4 cut(s) 333, 362, 448, 460
TaiI ACGT 1 cut(s) 374
TaqI TCGA 1 cut(s) 301
TasI AATT 5 cut(s) 88, 228, 247, 267, 296
TfiI GAWTC 1 cut(s) 453
TscAI CASTG 2 cut(s) 279, 451
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 155
TspGWI ACGGA 1 cut(s) 423
TspRI CASTG 2 cut(s) 279, 451
Van91I CCANNNNNTGG 1 cut(s) 17
VneI GTGCAC 1 cut(s) 442
VpaK11BI GGWCC 1 cut(s) 431
XapI RAATTY 2 cut(s) 267, 296
XceI RCATGY 1 cut(s) 33
XcmI CCANNNNNNNNNTGG 1 cut(s) 399
XmiI GTMKAC 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 2 cut(s) 288, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.