Prupe.1G269000_v2.0.a1

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013263
Physical Location & Seq
Reverse (-)
27621000 .. 27624505
3506 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G269000.1

Sequence Viewer

Length: 1158 bp
ATGTCGTCGCTGTGCTGCTTAGGACTTGCTCCGCAATGGAGGGAGAAGAGCGTGCGCTTCTTGCTCTTCCGTCACTCGAAGAGAAGGGCTTGTAGTAGCAGCAGCTTCGTGCCCAGAATCACTTCCTCTTCAACCAAAGCAACACAGTTGGGTTATGATCCTTCTGAGGACTTTTTCGGGCTCGAGGCCAATCTAAAGCCAAGGAATGCTACTTTGGGTGCACGCAAACCAAGATCCTGGTTCGGTCCAAATGGGCAGTATATCAGAGAGCTACCTTGCCCAAGTTGCCGAGGGAGGGGCTATACTCCCTGTTCAGAATGTGGTATAGAAAGGTCCAGATCAGATTGTTCACAGTGTGTTGGGAAGGGCATAATGACTTGTCGTCAGTGCTCGGGAGATTGTGTCATATGGGAAGAGTCAATTGATGAACGACCATGGGAGAAAGCCCGCTCAATTTCTCCTCTCAAAATGAAGGAAGATGATGAAGTTGACAATTTAGACATAAAGCTGGATGTGAAGAAAAAATCAAAGCGAGTATACCAGTCACCACCTCCTGAAGTCGGACTGAAGATCAGCCGGTCTCTAAAAAGTTTGAATGCCAAAACTGGTCTATTTAGTAAGCGAATGAAAATCATCCATCGTGATCCCATGCTTCATGCTCAAAGAGTGGCTGCAATTAAGAAAGCCAAGGGAACTGCTGCAGCAAGAAAGCGTGCTTCTGAAGCTTTAAAAGTTTTCTTTAGTGACCCAGAAAACCGTCGCAAAAGGAGCATTGCAATGAAGGGAGTGAAATTTTATTGCAGACACTGTGGACGTGAGGGGCATAGGAGACACTACTGTCCAGAACTGAAAAGTAGTTTGATAAATAGGCAGTTCGTGTGTGGCATTTGTGGGGAAAAAGGCCATAACAGAAGAACTTGTCCAAAGTCAAGGTTGGGCAGCCACAAAAGCGCAGTTAGAAGACATCACCATTGCAAGATATGTGGTCAAAGAGGCCATAATAGCAGGACATGCCCTAAACTGTTAGGGGTAAAGTCCAGTGTTGATATAAAGAAAGGCTTTCACAGTTCTGGTCGCAGAGGAGCATACAAGTGCAAGTTGTGCCAACAAAATGGGCATAATAGTAGGACATGTCCTAATAAAATTGTATCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC zf-CCHC_2

Protein Analysis

386

Amino Acids

43.42

Weight (kDa)

10.12

Isoelectric Point (pI)

55.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20220 AT5G20220 AT5G20220 AT5G20220
fragaria_vesca FvH4_4g31851
malus_domestica MD13G1078100.v1.1
prunus_persica Prupe.1G269000_v2.0.a1
pyrus_communis pycom13g06760
rosa_chinensis RchiOBHm_Chr4g0440521
rosa_laevigata RLG00000006172
rosa_roxburghii Rroxscaffold_5G00381350
rosa_rugosa Rorug04G0326400
rosa_samantha Rh4AG378100 Rh4BG390700 Rh4CG405400 Rh4DG384400
rosa_wichuraiana Rw4G032360 Rw4G032460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 837
AccBSI CCGCTC 1 cut(s) 450
AccI GTMKAC 1 cut(s) 537
AciI CCGC 2 cut(s) 32, 448
AclWI GGATC 3 cut(s) 152, 228, 638
AcsI RAATTY 1 cut(s) 791
AcuI CTGAAG 3 cut(s) 576, 587, 741
AdeI CACNNNGTG 1 cut(s) 356
AfiI CCNNNNNNNGG 2 cut(s) 295, 560
AflIII ACRYGT 1 cut(s) 1130
AgsI TTSAA 2 cut(s) 132, 595
AhdI GACNNNNNGTC 1 cut(s) 381
AjiI CACGTC 1 cut(s) 815
AjnI CCWGG 1 cut(s) 236
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 4 cut(s) 105, 271, 508, 725
AluI AGCT 4 cut(s) 105, 271, 508, 725
Alw21I GWGCWC 2 cut(s) 223, 392
Alw26I GTCTC 2 cut(s) 585, 823
Alw44I GTGCAC 1 cut(s) 219
AlwI GGATC 3 cut(s) 152, 228, 638
AlwNI CAGNNNCTG 1 cut(s) 807
Ama87I CYCGRG 2 cut(s) 182, 391
AoxI GGCC 3 cut(s) 186, 901, 994
ApaLI GTGCAC 1 cut(s) 219
ApeKI GCWGC 7 cut(s) 15, 99, 102, 671, 698, 701, 939
ApoI RAATTY 1 cut(s) 791
Asp700I GAANNNNTTC 1 cut(s) 121
AspLEI GCGC 2 cut(s) 57, 953
AspS9I GGNCC 2 cut(s) 245, 333
AsuHPI GGTGA 2 cut(s) 537, 959
AvaI CYCGRG 2 cut(s) 182, 391
AvaII GGWCC 2 cut(s) 245, 333
BaeGI GKGCMC 2 cut(s) 114, 223
BanII GRGCYC 1 cut(s) 183
BbsI GAAGAC 1 cut(s) 967
Bbv12I GWGCWC 2 cut(s) 223, 392
BbvI GCAGC 7 cut(s) 2, 111, 114, 658, 685, 713, 951
BccI CCATC 1 cut(s) 645
BcgI CGANNNNNNTGC 2 cut(s) 88, 122
BciT130I CCWGG 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 585, 823
BfmI CTRYAG 1 cut(s) 699
BisI GCNGC 7 cut(s) 16, 100, 103, 672, 699, 702, 940
BlsI GCNGC 7 cut(s) 17, 101, 104, 673, 700, 703, 941
Bme1390I CCNGG 1 cut(s) 238
Bme18I GGWCC 2 cut(s) 245, 333
BmeRI GACNNNNNGTC 1 cut(s) 381
BmeT110I CYCGRG 2 cut(s) 182, 391
BmgBI CACGTC 1 cut(s) 815
BmgT120I GGNCC 2 cut(s) 245, 333
BmrFI CCNGG 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 967
Bpu10I CCTNAGC 1 cut(s) 19
BsaI GGTCTC 1 cut(s) 585
BsaJI CCNNGG 4 cut(s) 200, 289, 434, 687
BsaXI ACNNNNNCTCC 2 cut(s) 387, 417
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 560
Bse118I RCCGGY 1 cut(s) 576
Bse1I ACTGG 3 cut(s) 541, 610, 1038
Bse3DI GCAATG 4 cut(s) 41, 771, 783, 970
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 4 cut(s) 200, 289, 434, 687
BseGI GGATG 2 cut(s) 517, 633
BseLI CCNNNNNNNGG 2 cut(s) 295, 560
BseMI GCAATG 4 cut(s) 41, 771, 783, 970
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 3 cut(s) 541, 610, 1038
BseRI GAGGAG 2 cut(s) 450, 1095
BseSI GKGCMC 2 cut(s) 114, 223
BseXI GCAGC 7 cut(s) 2, 111, 114, 658, 685, 713, 951
BshFI GGCC 3 cut(s) 188, 903, 996
BsiHKAI GWGCWC 2 cut(s) 223, 392
BsiHKCI CYCGRG 2 cut(s) 182, 391
BsiSI CCGG 1 cut(s) 577
BslI CCNNNNNNNGG 2 cut(s) 295, 560
BsmAI GTCTC 2 cut(s) 585, 823
BsmI GAATGC 2 cut(s) 211, 601
BsnI GGCC 3 cut(s) 188, 903, 996
Bso31I GGTCTC 1 cut(s) 585
BsoBI CYCGRG 2 cut(s) 182, 391
Bsp1286I GDGCHC 4 cut(s) 114, 183, 223, 392
Bsp143I GATC 5 cut(s) 157, 233, 338, 570, 643
Bsp19I CCATGG 1 cut(s) 434
BspACI CCGC 2 cut(s) 32, 448
BspANI GGCC 3 cut(s) 188, 903, 996
BspCNI CTCAG 1 cut(s) 157
BspMAI CTGCAG 1 cut(s) 703
BspPI GGATC 3 cut(s) 152, 228, 638
BspQI GCTCTTC 2 cut(s) 41, 71
BspTNI GGTCTC 1 cut(s) 585
BsrBI CCGCTC 1 cut(s) 450
BsrDI GCAATG 4 cut(s) 41, 771, 783, 970
BsrFI RCCGGY 1 cut(s) 576
BsrI ACTGG 3 cut(s) 541, 610, 1038
BssAI RCCGGY 1 cut(s) 576
BssECI CCNNGG 4 cut(s) 200, 289, 434, 687
BssMI GATC 5 cut(s) 157, 233, 338, 570, 643
BssNAI GTATAC 1 cut(s) 538
BssT1I CCWWGG 3 cut(s) 200, 434, 687
Bst1107I GTATAC 1 cut(s) 538
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 7 cut(s) 147, 354, 758, 809, 839, 1023, 1067
Bst6I CTCTTC 5 cut(s) 41, 71, 74, 133, 408
BstAPI GCANNNNNTGC 2 cut(s) 1011, 1101
BstC8I GCNNGC 4 cut(s) 53, 223, 448, 714
BstDEI CTNAG 2 cut(s) 19, 165
BstDSI CCRYGG 1 cut(s) 434
BstF5I GGATG 2 cut(s) 517, 633
BstHHI GCGC 2 cut(s) 57, 953
BstKTI GATC 5 cut(s) 160, 236, 341, 573, 646
BstMAI GTCTC 2 cut(s) 585, 823
BstMBI GATC 5 cut(s) 157, 233, 338, 570, 643
BstMWI GCNNNNNNNGC 8 cut(s) 61, 285, 722, 768, 948, 1002, 1011, 1101
BstNI CCWGG 1 cut(s) 238
BstNSI RCATGY 2 cut(s) 1014, 1134
BstSCI CCNGG 1 cut(s) 236
BstSFI CTRYAG 1 cut(s) 699
BstSLI GKGCMC 2 cut(s) 114, 223
BstV1I GCAGC 7 cut(s) 2, 111, 114, 658, 685, 713, 951
BstV2I GAAGAC 1 cut(s) 967
BstX2I RGATCY 1 cut(s) 233
BstXI CCANNNNNNTGG 2 cut(s) 237, 1112
BstYI RGATCY 1 cut(s) 233
BstZ17I GTATAC 1 cut(s) 538
BsuRI GGCC 3 cut(s) 188, 903, 996
BtgI CCRYGG 1 cut(s) 434
BtrI CACGTC 1 cut(s) 815
BtsCI GGATG 2 cut(s) 517, 633
BtsIMutI CAGTG 4 cut(s) 359, 392, 805, 1045
Cac8I GCNNGC 4 cut(s) 53, 223, 448, 714
CaiI CAGNNNCTG 1 cut(s) 807
CfoI GCGC 2 cut(s) 57, 953
Cfr10I RCCGGY 1 cut(s) 576
Cfr13I GGNCC 2 cut(s) 245, 333
CspCI CAANNNNNGTGG 2 cut(s) 964, 999
CviAII CATG 5 cut(s) 435, 649, 656, 1011, 1131
DdeI CTNAG 2 cut(s) 19, 165
DpnI GATC 5 cut(s) 159, 235, 340, 572, 645
DpnII GATC 5 cut(s) 157, 233, 338, 570, 643
DraI TTTAAA 1 cut(s) 729
DraIII CACNNNGTG 1 cut(s) 356
DrdI GACNNNNNNGTC 1 cut(s) 837
DriI GACNNNNNGTC 1 cut(s) 381
DseDI GACNNNNNNGTC 1 cut(s) 837
Eam1104I CTCTTC 5 cut(s) 41, 71, 74, 133, 408
Eam1105I GACNNNNNGTC 1 cut(s) 381
EarI CTCTTC 5 cut(s) 41, 71, 74, 133, 408
Eco130I CCWWGG 3 cut(s) 200, 434, 687
Eco24I GRGCYC 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 585
Eco47I GGWCC 2 cut(s) 245, 333
Eco57I CTGAAG 3 cut(s) 576, 587, 741
Eco88I CYCGRG 2 cut(s) 182, 391
EcoRII CCWGG 1 cut(s) 236
EcoT14I CCWWGG 3 cut(s) 200, 434, 687
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 3 cut(s) 200, 434, 687
FaeI CATG 5 cut(s) 438, 652, 659, 1014, 1134
FalI AAGNNNNNCTT 2 cut(s) 1043, 1075
FatI CATG 5 cut(s) 434, 648, 655, 1010, 1130
FauI CCCGC 1 cut(s) 455
FauNDI CATATG 1 cut(s) 407
FblI GTMKAC 1 cut(s) 537
Fnu4HI GCNGC 7 cut(s) 16, 100, 103, 672, 699, 702, 940
FokI GGATG 2 cut(s) 524, 620
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 7 cut(s) 16, 100, 103, 672, 699, 702, 940
GlaI GCGC 2 cut(s) 56, 952
GluI GCNGC 7 cut(s) 16, 100, 103, 672, 699, 702, 940
HaeIII GGCC 3 cut(s) 188, 903, 996
HapII CCGG 1 cut(s) 577
HhaI GCGC 2 cut(s) 57, 953
Hin1II CATG 5 cut(s) 438, 652, 659, 1014, 1134
Hin6I GCGC 2 cut(s) 55, 951
HinP1I GCGC 2 cut(s) 55, 951
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HindIII AAGCTT 1 cut(s) 723
HinfI GANTC 2 cut(s) 117, 416
HpaII CCGG 1 cut(s) 577
HphI GGTGA 2 cut(s) 537, 959
Hpy166II GTNNAC 5 cut(s) 221, 350, 490, 538, 812
Hpy188I TCNGA 6 cut(s) 166, 266, 316, 343, 563, 721
Hpy188III TCNNGA 6 cut(s) 336, 393, 554, 641, 842, 1155
Hpy8I GTNNAC 5 cut(s) 221, 350, 490, 538, 812
Hpy99I CGWCG 2 cut(s) 10, 762
HpyAV CCTTC 5 cut(s) 78, 171, 358, 466, 775
HpyCH4III ACNGT 7 cut(s) 147, 354, 758, 809, 839, 1023, 1067
HpyCH4IV ACGT 1 cut(s) 814
HpyCH4V TGCA 7 cut(s) 221, 674, 701, 776, 801, 975, 1095
HpyF10VI GCNNNNNNNGC 8 cut(s) 61, 285, 722, 768, 948, 1002, 1011, 1101
HpyF3I CTNAG 2 cut(s) 19, 165
HpySE526I ACGT 1 cut(s) 814
Hsp92II CATG 5 cut(s) 438, 652, 659, 1014, 1134
HspAI GCGC 2 cut(s) 55, 951
Kzo9I GATC 5 cut(s) 157, 233, 338, 570, 643
LguI GCTCTTC 2 cut(s) 41, 71
LmnI GCTCC 3 cut(s) 34, 768, 1082
Lsp1109I GCAGC 7 cut(s) 2, 111, 114, 658, 685, 713, 951
MaeII ACGT 1 cut(s) 814
MaeIII GTNAC 3 cut(s) 71, 543, 743
MalI GATC 5 cut(s) 159, 235, 340, 572, 645
MbiI CCGCTC 1 cut(s) 450
MboI GATC 5 cut(s) 157, 233, 338, 570, 643
MfeI CAATTG 1 cut(s) 420
MflI RGATCY 1 cut(s) 233
MhlI GDGCHC 4 cut(s) 114, 183, 223, 392
MluCI AATT 6 cut(s) 420, 453, 493, 675, 791, 1143
MlyI GAGTC 1 cut(s) 425
MmeI TCCRAC 1 cut(s) 541
MroXI GAANNNNTTC 1 cut(s) 121
MseI TTAA 2 cut(s) 678, 728
MslI CAYNNNNRTG 2 cut(s) 776, 1090
MspI CCGG 1 cut(s) 577
MspR9I CCNGG 1 cut(s) 238
MunI CAATTG 1 cut(s) 420
Mva1269I GAATGC 2 cut(s) 211, 601
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 8 cut(s) 61, 285, 722, 768, 948, 1002, 1011, 1101
NcoI CCATGG 1 cut(s) 434
NdeI CATATG 1 cut(s) 407
NdeII GATC 5 cut(s) 157, 233, 338, 570, 643
NlaIII CATG 5 cut(s) 438, 652, 659, 1014, 1134
NmeAIII GCCGAG 1 cut(s) 314
NmuCI GTSAC 3 cut(s) 71, 543, 743
NspI RCATGY 2 cut(s) 1014, 1134
PaeR7I CTCGAG 1 cut(s) 182
PciI ACATGT 1 cut(s) 1130
PciSI GCTCTTC 2 cut(s) 41, 71
PctI GAATGC 2 cut(s) 211, 601
PdmI GAANNNNTTC 1 cut(s) 121
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 7 cut(s) 17, 101, 104, 673, 700, 703, 941
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
PscI ACATGT 1 cut(s) 1130
Psp6I CCWGG 1 cut(s) 236
PspGI CCWGG 1 cut(s) 236
PspPI GGNCC 2 cut(s) 245, 333
PspXI VCTCGAGB 1 cut(s) 182
PstI CTGCAG 1 cut(s) 703
PstNI CAGNNNCTG 1 cut(s) 807
PsuI RGATCY 1 cut(s) 233
RseI CAYNNNNRTG 2 cut(s) 776, 1090
SapI GCTCTTC 2 cut(s) 41, 71
SaqAI TTAA 2 cut(s) 678, 728
SatI GCNGC 7 cut(s) 16, 100, 103, 672, 699, 702, 940
Sau3AI GATC 5 cut(s) 157, 233, 338, 570, 643
Sau96I GGNCC 2 cut(s) 245, 333
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 238
SduI GDGCHC 4 cut(s) 114, 183, 223, 392
SetI ASST 9 cut(s) 107, 273, 277, 335, 510, 553, 727, 817, 935
SfcI CTRYAG 1 cut(s) 699
Sfr274I CTCGAG 1 cut(s) 182
SinI GGWCC 2 cut(s) 245, 333
SlaI CTCGAG 1 cut(s) 182
SmiMI CAYNNNNRTG 2 cut(s) 776, 1090
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 6 cut(s) 420, 453, 493, 675, 791, 1143
SsiI CCGC 2 cut(s) 32, 448
StyD4I CCNGG 1 cut(s) 236
StyI CCWWGG 3 cut(s) 200, 434, 687
TaaI ACNGT 7 cut(s) 147, 354, 758, 809, 839, 1023, 1067
TaiI ACGT 1 cut(s) 817
TaqI TCGA 2 cut(s) 77, 183
TaqII GACCGA 1 cut(s) 233
TasI AATT 6 cut(s) 420, 453, 493, 675, 791, 1143
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 2 cut(s) 678, 728
Tru9I TTAA 2 cut(s) 678, 728
TscAI CASTG 4 cut(s) 359, 392, 812, 1045
TseFI GTSAC 3 cut(s) 71, 543, 743
TseI GCWGC 7 cut(s) 15, 99, 102, 671, 698, 701, 939
Tsp45I GTSAC 3 cut(s) 71, 543, 743
TspDTI ATGAA 6 cut(s) 441, 485, 498, 641, 644, 794
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 4 cut(s) 359, 392, 812, 1045
VneI GTGCAC 1 cut(s) 219
VpaK11BI GGWCC 2 cut(s) 245, 333
XapI RAATTY 1 cut(s) 791
XceI RCATGY 2 cut(s) 1014, 1134
XhoI CTCGAG 1 cut(s) 182
XmiI GTMKAC 1 cut(s) 537
XmnI GAANNNNTTC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.