Rroxscaffold_5G00381350

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0013263
Physical Location & Seq
Forward (+)
61376349 .. 61379588
3240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00381350.1

Sequence Viewer

Length: 1344 bp
ATGGGCTTCATCGCGGAAAAAGGCGCGGCCGGTTGTCACTTTTTCAGCCTCAGAATCAGCACCGGCTCTTCTTCTTCTTCTTCTTCAAAGCAAAGCTGGGAGCTTTTCTCTGCGTTTTGTTACTGTCAAATGTCGTCGTTGTGTTCGTTAGGGCTTGCGCCACAGTGGAGTCATAAGAGCTCGAGCTTCTTGTTCTTATTCAAATTCAAGAGGACTTTAACCTTCGTCCCCAGAGTCACTTCTTCTTCTTCTTCTTCTTCAAACGGCGACGACTCTGTTTCGGCGCCAAAACCAAAGCAGTTGGGCTATGATCTTTCTGAGGACCTATTCGGGCTTGAGGGTAATCTGAAGCCAAGGAATGCTAGTTTGGGTGCGCAAAAACCAAGCTCTTGGTTCGGTCCAAATGGTCAGTATATCAGAGAGCTACCATGCCCAAGTTGCCGAGGGAGAGGATATACTCCTTGTACTGAGTGTGGTATAGAAAGGTCCAGATCAGACTGTTCACAGTGCCTTGGCAAGGGCATAATGACTTGTCGTCAGTGCATGGGAGATTGTGTCATATGGGAAGAGTCGATTGATGAACGGCCATGGGAAAAAGCTCGCTCAATTTCTCCACTTAAAGTGAAGGAAGATGATGAAGTTGACAATTTGGAAATAAAACTGGATGTTAAGAGAAAGTCAAAGCGAGTATACCAGTCACCACCTCCTGAAGTTGGACTGAAGATTAGCCGCTCTCTGAAAAGTCTGAATGCCAAAACTGGTCTATTTAGTAAGAGAATGAAGATTATCCACCGTGATCCTAGGCTTCATGCTCAAAGAGTGGCAGCAATTAAGAAAGCCAAGGGAACTGCCGCAGCTAGGAAGCATACCTCTGAAACTTTAAAAGCTTTCTTTAGTGACCCAGAAAACCGTCGCAGAAGGAGCATTTCCATGCAGGGTCAGTTCAAACCTTACGAAACTGTGGGCGGGGAGGGGCATAGGAGGCACTACTGTCCAGAACTGAAGGCTAGTTTGATGAATAGGCAGTTCATCTGTGGTGTGTGTGGAGAAAAGGGTCATAACAGAAGAACCTGTCCAACGTTGAGCCGACCCAAAAGCACCGTTAGAAGACCTCACCATTGCAGAATATGTGATCAAAGAGGCCACAATCGAACGACATGCCCCAAAGTGATTGGACCAAAGTTTATTGATGTAAAGAACGGGTTTCACAGTTCTGTAAGCCGAAGAACATACAAGTGCAAGTTGTGCAAAGAAAATGGGCATAATAGTAGGACATGTCCTACTCATAACAGAAATGTACATCCCTCAAAGATTGGTCATCAATCTGAGGAAGGAAATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC zf-CCHC_2

Protein Analysis

447

Amino Acids

50.12

Weight (kDa)

9.77

Isoelectric Point (pI)

56.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20220 AT5G20220 AT5G20220 AT5G20220
fragaria_vesca FvH4_4g31851
malus_domestica MD13G1078100.v1.1
prunus_persica Prupe.1G269000_v2.0.a1
pyrus_communis pycom13g06760
rosa_chinensis RchiOBHm_Chr4g0440521
rosa_laevigata RLG00000006172
rosa_roxburghii Rroxscaffold_5G00381350
rosa_rugosa Rorug04G0326400
rosa_samantha Rh4AG378100 Rh4BG390700 Rh4CG405400 Rh4DG384400
rosa_wichuraiana Rw4G032360 Rw4G032460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 375
AccB1I GGYRCC 1 cut(s) 283
AccBSI CCGCTC 1 cut(s) 732
AccI GTMKAC 1 cut(s) 690
AccII CGCG 2 cut(s) 14, 26
AciI CCGC 5 cut(s) 14, 26, 730, 852, 966
AclI AACGTT 1 cut(s) 1079
AclWI GGATC 1 cut(s) 791
AcoI YGGCCR 2 cut(s) 27, 584
AcsI RAATTY 1 cut(s) 203
AcuI CTGAAG 4 cut(s) 368, 729, 740, 1022
AcyI GRCGYC 1 cut(s) 284
AfaI GTAC 2 cut(s) 466, 1299
AfiI CCNNNNNNNGG 3 cut(s) 517, 713, 858
AflIII ACRYGT 1 cut(s) 1274
AgsI TTSAA 5 cut(s) 87, 202, 208, 261, 946
AhdI GACNNNNNGTC 1 cut(s) 534
AjuI GAANNNNNNNTTGG 2 cut(s) 350, 382
AluBI AGCT 9 cut(s) 96, 103, 180, 186, 387, 424, 599, 857, 887
AluI AGCT 9 cut(s) 96, 103, 180, 186, 387, 424, 599, 857, 887
Alw21I GWGCWC 1 cut(s) 182
AlwI GGATC 1 cut(s) 791
Ama87I CYCGRG 1 cut(s) 181
AoxI GGCC 3 cut(s) 27, 584, 1141
ApeKI GCWGC 2 cut(s) 824, 854
ApoI RAATTY 1 cut(s) 203
AspA2I CCTAGG 1 cut(s) 800
AspLEI GCGC 4 cut(s) 26, 160, 286, 376
AspS9I GGNCC 4 cut(s) 322, 398, 486, 1175
AsuHPI GGTGA 2 cut(s) 690, 1106
AvaI CYCGRG 1 cut(s) 181
AvaII GGWCC 4 cut(s) 322, 398, 486, 1175
AvrII CCTAGG 1 cut(s) 800
BanI GGYRCC 1 cut(s) 283
BanII GRGCYC 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 1114
Bbv12I GWGCWC 1 cut(s) 182
BbvI GCAGC 2 cut(s) 836, 866
BceAI ACGGC 2 cut(s) 280, 599
BcgI CGANNNNNNTGC 2 cut(s) 1140, 1174
BclI TGATCA 1 cut(s) 1132
BfaI CTAG 4 cut(s) 363, 801, 858, 1008
BfoI RGCGCY 1 cut(s) 287
BisI GCNGC 5 cut(s) 27, 730, 825, 852, 855
BlnI CCTAGG 1 cut(s) 800
BlsI GCNGC 5 cut(s) 28, 731, 826, 853, 856
Bme18I GGWCC 4 cut(s) 322, 398, 486, 1175
BmeRI GACNNNNNGTC 1 cut(s) 534
BmeT110I CYCGRG 1 cut(s) 181
BmgT120I GGNCC 4 cut(s) 322, 398, 486, 1175
BmiI GGNNCC 1 cut(s) 285
BpiI GAAGAC 1 cut(s) 1114
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BpuEI CTTGAG 1 cut(s) 356
BsaHI GRCGYC 1 cut(s) 284
BsaJI CCNNGG 6 cut(s) 353, 442, 511, 587, 800, 840
BsaXI ACNNNNNCTCC 2 cut(s) 540, 570
Bsc4I CCNNNNNNNGG 3 cut(s) 517, 713, 858
Bse118I RCCGGY 2 cut(s) 29, 62
Bse1I ACTGG 3 cut(s) 666, 694, 763
Bse3DI GCAATG 1 cut(s) 1117
BseDI CCNNGG 6 cut(s) 353, 442, 511, 587, 800, 840
BseGI GGATG 2 cut(s) 670, 1300
BseLI CCNNNNNNNGG 3 cut(s) 517, 713, 858
BseMI GCAATG 1 cut(s) 1117
BseMII CTCAG 4 cut(s) 64, 309, 459, 1317
BseNI ACTGG 3 cut(s) 666, 694, 763
BseX3I CGGCCG 1 cut(s) 27
BseXI GCAGC 2 cut(s) 836, 866
BseYI CCCAGC 1 cut(s) 96
Bsh1236I CGCG 2 cut(s) 14, 26
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 3 cut(s) 29, 586, 1143
BshNI GGYRCC 1 cut(s) 283
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 182
BsiHKCI CYCGRG 1 cut(s) 181
BsiSI CCGG 2 cut(s) 30, 63
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 3 cut(s) 517, 713, 858
BsmFI GGGAC 1 cut(s) 212
BsmI GAATGC 2 cut(s) 364, 754
BsnI GGCC 3 cut(s) 29, 586, 1143
BsoBI CYCGRG 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 182
Bsp1407I TGTACA 1 cut(s) 1297
Bsp143I GATC 4 cut(s) 310, 491, 796, 1132
Bsp19I CCATGG 1 cut(s) 587
BspACI CCGC 5 cut(s) 14, 26, 730, 852, 966
BspANI GGCC 3 cut(s) 29, 586, 1143
BspCNI CTCAG 4 cut(s) 63, 310, 460, 1318
BspFNI CGCG 2 cut(s) 14, 26
BspLI GGNNCC 1 cut(s) 285
BspPI GGATC 1 cut(s) 791
BspQI GCTCTTC 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 283
BsrBI CCGCTC 1 cut(s) 732
BsrDI GCAATG 1 cut(s) 1117
BsrFI RCCGGY 2 cut(s) 29, 62
BsrGI TGTACA 1 cut(s) 1297
BsrI ACTGG 3 cut(s) 666, 694, 763
BssAI RCCGGY 2 cut(s) 29, 62
BssECI CCNNGG 6 cut(s) 353, 442, 511, 587, 800, 840
BssMI GATC 4 cut(s) 310, 491, 796, 1132
BssNAI GTATAC 1 cut(s) 691
BssNI GRCGYC 1 cut(s) 284
BssT1I CCWWGG 5 cut(s) 353, 511, 587, 800, 840
Bst1107I GTATAC 1 cut(s) 691
Bst6I CTCTTC 2 cut(s) 73, 561
BstACI GRCGYC 1 cut(s) 284
BstAPI GCANNNNNTGC 1 cut(s) 1245
BstAUI TGTACA 1 cut(s) 1297
BstC8I GCNNGC 2 cut(s) 156, 601
BstDEI CTNAG 4 cut(s) 50, 318, 468, 1326
BstDSI CCRYGG 1 cut(s) 587
BstENI CCTNNNNNAGG 1 cut(s) 515
BstF5I GGATG 2 cut(s) 670, 1300
BstFNI CGCG 2 cut(s) 14, 26
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 4 cut(s) 26, 160, 286, 376
BstKTI GATC 4 cut(s) 313, 494, 799, 1135
BstMBI GATC 4 cut(s) 310, 491, 796, 1132
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 4 cut(s) 438, 921, 982, 1245
BstNSI RCATGY 2 cut(s) 1161, 1278
BstUI CGCG 2 cut(s) 14, 26
BstV1I GCAGC 2 cut(s) 836, 866
BstV2I GAAGAC 1 cut(s) 1114
BstXI CCANNNNNNTGG 1 cut(s) 390
BstZ17I GTATAC 1 cut(s) 691
BstZI CGGCCG 1 cut(s) 27
BsuRI GGCC 3 cut(s) 29, 586, 1143
BtgI CCRYGG 1 cut(s) 587
BtsCI GGATG 2 cut(s) 670, 1300
BtsIMutI CAGTG 3 cut(s) 170, 512, 545
Cac8I GCNNGC 2 cut(s) 156, 601
CfoI GCGC 4 cut(s) 26, 160, 286, 376
Cfr10I RCCGGY 2 cut(s) 29, 62
Cfr13I GGNCC 4 cut(s) 322, 398, 486, 1175
Csp6I GTAC 2 cut(s) 465, 1298
CviAII CATG 7 cut(s) 429, 544, 588, 809, 931, 1158, 1275
CviQI GTAC 2 cut(s) 465, 1298
DdeI CTNAG 4 cut(s) 50, 318, 468, 1326
DinI GGCGCC 1 cut(s) 285
DpnI GATC 4 cut(s) 312, 493, 798, 1134
DpnII GATC 4 cut(s) 310, 491, 796, 1132
DraI TTTAAA 1 cut(s) 882
DriI GACNNNNNGTC 1 cut(s) 534
EaeI YGGCCR 2 cut(s) 27, 584
EagI CGGCCG 1 cut(s) 27
Eam1104I CTCTTC 2 cut(s) 73, 561
Eam1105I GACNNNNNGTC 1 cut(s) 534
EarI CTCTTC 2 cut(s) 73, 561
Ecl136II GAGCTC 1 cut(s) 180
EclXI CGGCCG 1 cut(s) 27
Eco130I CCWWGG 5 cut(s) 353, 511, 587, 800, 840
Eco24I GRGCYC 1 cut(s) 182
Eco47I GGWCC 4 cut(s) 322, 398, 486, 1175
Eco52I CGGCCG 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 180
Eco57I CTGAAG 4 cut(s) 368, 729, 740, 1022
Eco88I CYCGRG 1 cut(s) 181
EcoICRI GAGCTC 1 cut(s) 180
EcoNI CCTNNNNNAGG 1 cut(s) 515
EcoO109I RGGNCCY 1 cut(s) 322
EcoT14I CCWWGG 5 cut(s) 353, 511, 587, 800, 840
EcoT38I GRGCYC 1 cut(s) 182
EgeI GGCGCC 1 cut(s) 285
EheI GGCGCC 1 cut(s) 285
ErhI CCWWGG 5 cut(s) 353, 511, 587, 800, 840
FaeI CATG 7 cut(s) 432, 547, 591, 812, 934, 1161, 1278
FaqI GGGAC 1 cut(s) 212
FatI CATG 7 cut(s) 428, 543, 587, 808, 930, 1157, 1274
FauI CCCGC 1 cut(s) 959
FauNDI CATATG 1 cut(s) 560
FbaI TGATCA 1 cut(s) 1132
FblI GTMKAC 1 cut(s) 690
Fnu4HI GCNGC 5 cut(s) 27, 730, 825, 852, 855
FokI GGATG 2 cut(s) 677, 1287
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 5 cut(s) 27, 730, 825, 852, 855
FspBI CTAG 4 cut(s) 363, 801, 858, 1008
FspI TGCGCA 1 cut(s) 375
GlaI GCGC 4 cut(s) 25, 159, 285, 375
GluI GCNGC 5 cut(s) 27, 730, 825, 852, 855
GsaI CCCAGC 1 cut(s) 100
HaeII RGCGCY 1 cut(s) 287
HaeIII GGCC 3 cut(s) 29, 586, 1143
HapII CCGG 2 cut(s) 30, 63
HhaI GCGC 4 cut(s) 26, 160, 286, 376
Hin1I GRCGYC 1 cut(s) 284
Hin1II CATG 7 cut(s) 432, 547, 591, 812, 934, 1161, 1278
Hin6I GCGC 4 cut(s) 24, 158, 284, 374
HinP1I GCGC 4 cut(s) 24, 158, 284, 374
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HindIII AAGCTT 1 cut(s) 885
HinfI GANTC 5 cut(s) 54, 169, 234, 272, 569
HpaII CCGG 2 cut(s) 30, 63
HphI GGTGA 2 cut(s) 690, 1106
Hpy166II GTNNAC 3 cut(s) 503, 643, 691
Hpy188I TCNGA 9 cut(s) 53, 319, 348, 419, 496, 738, 747, 874, 1327
Hpy188III TCNNGA 4 cut(s) 208, 489, 707, 995
Hpy8I GTNNAC 3 cut(s) 503, 643, 691
Hpy99I CGWCG 3 cut(s) 139, 272, 915
HpyAV CCTTC 5 cut(s) 232, 619, 912, 997, 1325
HpyCH4IV ACGT 1 cut(s) 1079
HpyCH4V TGCA 5 cut(s) 543, 934, 1122, 1239, 1248
HpyF10VI GCNNNNNNNGC 4 cut(s) 438, 921, 982, 1245
HpyF3I CTNAG 4 cut(s) 50, 318, 468, 1326
HpySE526I ACGT 1 cut(s) 1079
Hsp92I GRCGYC 1 cut(s) 284
Hsp92II CATG 7 cut(s) 432, 547, 591, 812, 934, 1161, 1278
HspAI GCGC 4 cut(s) 24, 158, 284, 374
KasI GGCGCC 1 cut(s) 283
Ksp22I TGATCA 1 cut(s) 1132
Kzo9I GATC 4 cut(s) 310, 491, 796, 1132
LguI GCTCTTC 1 cut(s) 73
LmnI GCTCC 2 cut(s) 100, 921
Lsp1109I GCAGC 2 cut(s) 836, 866
MaeI CTAG 4 cut(s) 363, 801, 858, 1008
MaeII ACGT 1 cut(s) 1079
MaeIII GTNAC 5 cut(s) 35, 119, 235, 696, 896
MalI GATC 4 cut(s) 312, 493, 798, 1134
MbiI CCGCTC 1 cut(s) 732
MboI GATC 4 cut(s) 310, 491, 796, 1132
MhlI GDGCHC 1 cut(s) 182
MluCI AATT 4 cut(s) 203, 606, 646, 828
Mly113I GGCGCC 1 cut(s) 284
MlyI GAGTC 4 cut(s) 178, 243, 266, 578
MmeI TCCRAC 2 cut(s) 694, 1100
MseI TTAA 5 cut(s) 218, 618, 669, 831, 881
MslI CAYNNNNRTG 2 cut(s) 929, 1234
MspI CCGG 2 cut(s) 30, 63
Mva1269I GAATGC 2 cut(s) 364, 754
MvnI CGCG 2 cut(s) 14, 26
MwoI GCNNNNNNNGC 4 cut(s) 438, 921, 982, 1245
NarI GGCGCC 1 cut(s) 284
NcoI CCATGG 1 cut(s) 587
NdeI CATATG 1 cut(s) 560
NdeII GATC 4 cut(s) 310, 491, 796, 1132
NlaIII CATG 7 cut(s) 432, 547, 591, 812, 934, 1161, 1278
NlaIV GGNNCC 1 cut(s) 285
NmeAIII GCCGAG 1 cut(s) 467
NmuCI GTSAC 4 cut(s) 35, 235, 696, 896
NsbI TGCGCA 1 cut(s) 375
NspI RCATGY 2 cut(s) 1161, 1278
PaeR7I CTCGAG 1 cut(s) 181
PciI ACATGT 1 cut(s) 1274
PciSI GCTCTTC 1 cut(s) 73
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PctI GAATGC 2 cut(s) 364, 754
PfeI GAWTC 1 cut(s) 54
PkrI GCNGC 5 cut(s) 28, 731, 826, 853, 856
PleI GAGTC 4 cut(s) 177, 242, 266, 577
PluTI GGCGCC 1 cut(s) 287
PpsI GAGTC 4 cut(s) 177, 242, 266, 577
PpuMI RGGWCCY 1 cut(s) 322
PscI ACATGT 1 cut(s) 1274
Psp124BI GAGCTC 1 cut(s) 182
Psp1406I AACGTT 1 cut(s) 1079
Psp5II RGGWCCY 1 cut(s) 322
PspFI CCCAGC 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 4 cut(s) 322, 398, 486, 1175
PspPPI RGGWCCY 1 cut(s) 322
PspXI VCTCGAGB 1 cut(s) 181
RsaI GTAC 2 cut(s) 466, 1299
RsaNI GTAC 2 cut(s) 465, 1298
RseI CAYNNNNRTG 2 cut(s) 929, 1234
SacI GAGCTC 1 cut(s) 182
SapI GCTCTTC 1 cut(s) 73
SaqAI TTAA 5 cut(s) 218, 618, 669, 831, 881
SatI GCNGC 5 cut(s) 27, 730, 825, 852, 855
Sau3AI GATC 4 cut(s) 310, 491, 796, 1132
Sau96I GGNCC 4 cut(s) 322, 398, 486, 1175
SchI GAGTC 4 cut(s) 178, 243, 266, 578
SduI GDGCHC 1 cut(s) 182
SfoI GGCGCC 1 cut(s) 285
Sfr274I CTCGAG 1 cut(s) 181
SinI GGWCC 4 cut(s) 322, 398, 486, 1175
SlaI CTCGAG 1 cut(s) 181
SmiMI CAYNNNNRTG 2 cut(s) 929, 1234
SmlI CTYRAG 2 cut(s) 181, 335
SmoI CTYRAG 2 cut(s) 181, 335
Sse9I AATT 4 cut(s) 203, 606, 646, 828
SsiI CCGC 5 cut(s) 14, 26, 730, 852, 966
SspDI GGCGCC 1 cut(s) 283
SspMI CTAG 4 cut(s) 363, 801, 858, 1008
SstI GAGCTC 1 cut(s) 182
StyI CCWWGG 5 cut(s) 353, 511, 587, 800, 840
TaiI ACGT 1 cut(s) 1082
TaqI TCGA 3 cut(s) 182, 572, 1150
TaqII GACCGA 1 cut(s) 386
TasI AATT 4 cut(s) 203, 606, 646, 828
TatI WGTACW 2 cut(s) 464, 1297
TauI GCSGC 3 cut(s) 29, 732, 854
TfiI GAWTC 1 cut(s) 54
Tru1I TTAA 5 cut(s) 218, 618, 669, 831, 881
Tru9I TTAA 5 cut(s) 218, 618, 669, 831, 881
TscAI CASTG 3 cut(s) 170, 512, 545
TseFI GTSAC 4 cut(s) 35, 235, 696, 896
TseI GCWGC 2 cut(s) 824, 854
Tsp45I GTSAC 4 cut(s) 35, 235, 696, 896
TspDTI ATGAA 6 cut(s) 594, 651, 794, 797, 1018, 1031
TspRI CASTG 3 cut(s) 170, 512, 545
VpaK11BI GGWCC 4 cut(s) 322, 398, 486, 1175
XagI CCTNNNNNAGG 1 cut(s) 515
XapI RAATTY 1 cut(s) 203
XceI RCATGY 2 cut(s) 1161, 1278
XhoI CTCGAG 1 cut(s) 181
XmaJI CCTAGG 1 cut(s) 800
XmiI GTMKAC 1 cut(s) 690
XspI CTAG 4 cut(s) 363, 801, 858, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.