Rh4BG390700

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0013263
Physical Location & Seq
Forward (+)
54373065 .. 54376217
3153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG390700.1

Sequence Viewer

Length: 936 bp
ATGTCGTCGTTGTGTTCGTTAGGGCTTGCGCCGCAGTGGAGTCATAAGAGCGCGAGCTTCTTGTTCTTATTCAAATTCAAGAGAAGGACTTTAACCTTCGTCCCCAGAGTCACTTCTTCTTCTTCTTCAAACGGCGACGACTCTGTTTCGGCGCCAAAGCCAAAGCAGTTGGGCTATGATCTTTCTGAGGACCTATTCGGGCTTGAGGGTAATCTGAAGCCAAGGAATGCTAGTTTGGGTGCGCGAAAACCAAGCTCTTGGTTCGGTCCAAATGGTCAGTATATCAGAGAGCTACCATGCCCAAGTTGCCGAGGGAGGGGATATACTCCTTGTACTGAGTGTGGTATAGAAAGGTCCAGATCAGACTGTTCACAGTGCCTTGGCAAGGGCATAATGACTTGTCGTCAGTGCATGGGAGATTGTGTCATATGGGAAGAGTCGATTGATGAACGGCCATGGGAAAAAGCTCGCTCAATTTCTCCACTTAAAGTGAAGGAAGATGATGAAGTTGACAATTTGGAAATAAAACTGGATGTTAAGAGAAAGTCAAAGCGAGTATACCAGTCACCACCTCCTGAAGTTGGACTGAAGATTAGCCGCTCTCTGAAAAGTCTGAATGCCAAAACTGGTCTATTTAGTAAGAGAATGAAGATTATCCACCGTGATCCTAGGCTTCATGCTCAAAGAGTGGCAGCAATTAAGAAAGCCAAGGGAACTGCCGCAGCTAGAAAGCATACCTCTGAAACTTTAAAAGCTTTCTTTAGTGACCCAGAAAACCGTCGCAGAAGGAGCATTTCCATGCAGGGTCAGTTCAGTTCTTATACTAAATTACACGTTCATTGCAGACAGCTTTTAGTTGAATATACTATGTTTCATACTCACATCACACTGCCTCTTTTGTCAGAACCTTATGGTGTAATGGTTGATCTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC zf-CCHC_2

Protein Analysis

311

Amino Acids

35.04

Weight (kDa)

9.68

Isoelectric Point (pI)

53.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20220 AT5G20220 AT5G20220 AT5G20220
fragaria_vesca FvH4_4g31851
malus_domestica MD13G1078100.v1.1
prunus_persica Prupe.1G269000_v2.0.a1
pyrus_communis pycom13g06760
rosa_chinensis RchiOBHm_Chr4g0440521
rosa_laevigata RLG00000006172
rosa_roxburghii Rroxscaffold_5G00381350
rosa_rugosa Rorug04G0326400
rosa_samantha Rh4AG378100 Rh4BG390700 Rh4CG405400 Rh4DG384400
rosa_wichuraiana Rw4G032360 Rw4G032460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 151
AccBSI CCGCTC 1 cut(s) 600
AccI GTMKAC 1 cut(s) 558
AccII CGCG 2 cut(s) 53, 244
AciI CCGC 3 cut(s) 32, 598, 720
AclWI GGATC 1 cut(s) 659
AcoI YGGCCR 1 cut(s) 452
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 3 cut(s) 236, 597, 608
AcyI GRCGYC 1 cut(s) 152
AfaI GTAC 1 cut(s) 334
AfiI CCNNNNNNNGG 3 cut(s) 316, 385, 581
AflIII ACRYGT 1 cut(s) 832
AgsI TTSAA 4 cut(s) 73, 79, 129, 860
AhdI GACNNNNNGTC 1 cut(s) 402
AjuI GAANNNNNNNTTGG 2 cut(s) 218, 250
AluBI AGCT 7 cut(s) 57, 255, 292, 467, 725, 755, 850
AluI AGCT 7 cut(s) 57, 255, 292, 467, 725, 755, 850
AlwI GGATC 1 cut(s) 659
AoxI GGCC 1 cut(s) 452
ApeKI GCWGC 2 cut(s) 692, 722
ApoI RAATTY 1 cut(s) 74
AspA2I CCTAGG 1 cut(s) 668
AspLEI GCGC 4 cut(s) 31, 53, 154, 244
AspS9I GGNCC 3 cut(s) 190, 266, 354
AsuHPI GGTGA 1 cut(s) 558
AvaII GGWCC 3 cut(s) 190, 266, 354
AvrII CCTAGG 1 cut(s) 668
BanI GGYRCC 1 cut(s) 151
BbvI GCAGC 2 cut(s) 704, 734
BceAI ACGGC 2 cut(s) 148, 467
BfaI CTAG 3 cut(s) 231, 669, 726
BfoI RGCGCY 1 cut(s) 155
BisI GCNGC 5 cut(s) 32, 598, 693, 720, 723
BlnI CCTAGG 1 cut(s) 668
BlsI GCNGC 5 cut(s) 33, 599, 694, 721, 724
Bme18I GGWCC 3 cut(s) 190, 266, 354
BmeRI GACNNNNNGTC 1 cut(s) 402
BmgT120I GGNCC 3 cut(s) 190, 266, 354
BmiI GGNNCC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 224
BsaHI GRCGYC 1 cut(s) 152
BsaJI CCNNGG 6 cut(s) 221, 310, 379, 455, 668, 708
BsaXI ACNNNNNCTCC 2 cut(s) 408, 438
Bsc4I CCNNNNNNNGG 3 cut(s) 316, 385, 581
Bse1I ACTGG 3 cut(s) 534, 562, 631
Bse3DI GCAATG 1 cut(s) 838
BseDI CCNNGG 6 cut(s) 221, 310, 379, 455, 668, 708
BseGI GGATG 1 cut(s) 538
BseLI CCNNNNNNNGG 3 cut(s) 316, 385, 581
BseMI GCAATG 1 cut(s) 838
BseMII CTCAG 2 cut(s) 177, 327
BseNI ACTGG 3 cut(s) 534, 562, 631
BseXI GCAGC 2 cut(s) 704, 734
Bsh1236I CGCG 2 cut(s) 53, 244
BshFI GGCC 1 cut(s) 454
BshNI GGYRCC 1 cut(s) 151
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 3 cut(s) 316, 385, 581
BsmFI GGGAC 1 cut(s) 86
BsmI GAATGC 2 cut(s) 232, 622
BsnI GGCC 1 cut(s) 454
Bsp143I GATC 4 cut(s) 178, 359, 664, 925
Bsp19I CCATGG 1 cut(s) 455
BspACI CCGC 3 cut(s) 32, 598, 720
BspANI GGCC 1 cut(s) 454
BspCNI CTCAG 2 cut(s) 178, 328
BspFNI CGCG 2 cut(s) 53, 244
BspLI GGNNCC 1 cut(s) 153
BspPI GGATC 1 cut(s) 659
BspT107I GGYRCC 1 cut(s) 151
BsrBI CCGCTC 1 cut(s) 600
BsrDI GCAATG 1 cut(s) 838
BsrI ACTGG 3 cut(s) 534, 562, 631
BssECI CCNNGG 6 cut(s) 221, 310, 379, 455, 668, 708
BssMI GATC 4 cut(s) 178, 359, 664, 925
BssNAI GTATAC 1 cut(s) 559
BssNI GRCGYC 1 cut(s) 152
BssT1I CCWWGG 5 cut(s) 221, 379, 455, 668, 708
Bst1107I GTATAC 1 cut(s) 559
Bst4CI ACNGT 4 cut(s) 368, 375, 662, 779
Bst6I CTCTTC 1 cut(s) 429
BstACI GRCGYC 1 cut(s) 152
BstC8I GCNNGC 3 cut(s) 27, 55, 469
BstDEI CTNAG 2 cut(s) 186, 336
BstDSI CCRYGG 1 cut(s) 455
BstENI CCTNNNNNAGG 1 cut(s) 383
BstF5I GGATG 1 cut(s) 538
BstFNI CGCG 2 cut(s) 53, 244
BstH2I RGCGCY 1 cut(s) 155
BstHHI GCGC 4 cut(s) 31, 53, 154, 244
BstKTI GATC 4 cut(s) 181, 362, 667, 928
BstMBI GATC 4 cut(s) 178, 359, 664, 925
BstMWI GCNNNNNNNGC 3 cut(s) 31, 306, 789
BstUI CGCG 2 cut(s) 53, 244
BstV1I GCAGC 2 cut(s) 704, 734
BstXI CCANNNNNNTGG 1 cut(s) 258
BstZ17I GTATAC 1 cut(s) 559
BsuRI GGCC 1 cut(s) 454
BtgI CCRYGG 1 cut(s) 455
BtsCI GGATG 1 cut(s) 538
BtsI GCAGTG 2 cut(s) 41, 887
BtsIMutI CAGTG 4 cut(s) 41, 380, 413, 887
Cac8I GCNNGC 3 cut(s) 27, 55, 469
CfoI GCGC 4 cut(s) 31, 53, 154, 244
Cfr13I GGNCC 3 cut(s) 190, 266, 354
Csp6I GTAC 1 cut(s) 333
CviAII CATG 5 cut(s) 297, 412, 456, 677, 799
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 2 cut(s) 186, 336
DinI GGCGCC 1 cut(s) 153
DpnI GATC 4 cut(s) 180, 361, 666, 927
DpnII GATC 4 cut(s) 178, 359, 664, 925
DraI TTTAAA 1 cut(s) 750
DriI GACNNNNNGTC 1 cut(s) 402
EaeI YGGCCR 1 cut(s) 452
Eam1104I CTCTTC 1 cut(s) 429
Eam1105I GACNNNNNGTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 429
Eco130I CCWWGG 5 cut(s) 221, 379, 455, 668, 708
Eco47I GGWCC 3 cut(s) 190, 266, 354
Eco57I CTGAAG 3 cut(s) 236, 597, 608
EcoNI CCTNNNNNAGG 1 cut(s) 383
EcoO109I RGGNCCY 1 cut(s) 190
EcoT14I CCWWGG 5 cut(s) 221, 379, 455, 668, 708
EgeI GGCGCC 1 cut(s) 153
EheI GGCGCC 1 cut(s) 153
ErhI CCWWGG 5 cut(s) 221, 379, 455, 668, 708
FaeI CATG 5 cut(s) 300, 415, 459, 680, 802
FaqI GGGAC 1 cut(s) 86
FatI CATG 5 cut(s) 296, 411, 455, 676, 798
FauNDI CATATG 1 cut(s) 428
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 5 cut(s) 32, 598, 693, 720, 723
FokI GGATG 1 cut(s) 545
Fsp4HI GCNGC 5 cut(s) 32, 598, 693, 720, 723
FspBI CTAG 3 cut(s) 231, 669, 726
GlaI GCGC 4 cut(s) 30, 52, 153, 243
GluI GCNGC 5 cut(s) 32, 598, 693, 720, 723
HaeII RGCGCY 1 cut(s) 155
HaeIII GGCC 1 cut(s) 454
HhaI GCGC 4 cut(s) 31, 53, 154, 244
Hin1I GRCGYC 1 cut(s) 152
Hin1II CATG 5 cut(s) 300, 415, 459, 680, 802
Hin6I GCGC 4 cut(s) 29, 51, 152, 242
HinP1I GCGC 4 cut(s) 29, 51, 152, 242
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HindIII AAGCTT 1 cut(s) 753
HinfI GANTC 4 cut(s) 40, 108, 140, 437
HphI GGTGA 1 cut(s) 558
Hpy166II GTNNAC 3 cut(s) 371, 511, 559
Hpy188I TCNGA 8 cut(s) 187, 216, 287, 364, 606, 615, 742, 904
Hpy188III TCNNGA 3 cut(s) 79, 357, 575
Hpy8I GTNNAC 3 cut(s) 371, 511, 559
Hpy99I CGWCG 3 cut(s) 10, 140, 783
HpyAV CCTTC 4 cut(s) 78, 106, 487, 780
HpyCH4III ACNGT 4 cut(s) 368, 375, 662, 779
HpyCH4IV ACGT 1 cut(s) 834
HpyCH4V TGCA 3 cut(s) 411, 802, 843
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 306, 789
HpyF3I CTNAG 2 cut(s) 186, 336
HpySE526I ACGT 1 cut(s) 834
Hsp92I GRCGYC 1 cut(s) 152
Hsp92II CATG 5 cut(s) 300, 415, 459, 680, 802
HspAI GCGC 4 cut(s) 29, 51, 152, 242
KasI GGCGCC 1 cut(s) 151
Kzo9I GATC 4 cut(s) 178, 359, 664, 925
LmnI GCTCC 1 cut(s) 789
LpnPI CCDG 8 cut(s) 118, 370, 515, 575, 588, 612, 783, 788
Lsp1109I GCAGC 2 cut(s) 704, 734
MaeI CTAG 3 cut(s) 231, 669, 726
MaeII ACGT 1 cut(s) 834
MaeIII GTNAC 3 cut(s) 109, 564, 764
MalI GATC 4 cut(s) 180, 361, 666, 927
MbiI CCGCTC 1 cut(s) 600
MboI GATC 4 cut(s) 178, 359, 664, 925
MboII GAAGA 8 cut(s) 108, 111, 114, 117, 446, 509, 601, 661
MluCI AATT 5 cut(s) 74, 474, 514, 696, 827
Mly113I GGCGCC 1 cut(s) 152
MlyI GAGTC 4 cut(s) 49, 117, 134, 446
MmeI TCCRAC 1 cut(s) 562
MnlI CCTC 7 cut(s) 181, 199, 305, 309, 582, 748, 903
MseI TTAA 6 cut(s) 92, 486, 537, 699, 749, 934
MslI CAYNNNNRTG 1 cut(s) 797
Mva1269I GAATGC 2 cut(s) 232, 622
MvnI CGCG 2 cut(s) 53, 244
MwoI GCNNNNNNNGC 3 cut(s) 31, 306, 789
NarI GGCGCC 1 cut(s) 152
NcoI CCATGG 1 cut(s) 455
NdeI CATATG 1 cut(s) 428
NdeII GATC 4 cut(s) 178, 359, 664, 925
NlaIII CATG 5 cut(s) 300, 415, 459, 680, 802
NlaIV GGNNCC 1 cut(s) 153
NmeAIII GCCGAG 1 cut(s) 335
NmuCI GTSAC 3 cut(s) 109, 564, 764
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PctI GAATGC 2 cut(s) 232, 622
PkrI GCNGC 5 cut(s) 33, 599, 694, 721, 724
PleI GAGTC 4 cut(s) 48, 116, 134, 445
PluTI GGCGCC 1 cut(s) 155
PpsI GAGTC 4 cut(s) 48, 116, 134, 445
PpuMI RGGWCCY 1 cut(s) 190
Psp5II RGGWCCY 1 cut(s) 190
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 3 cut(s) 190, 266, 354
PspPPI RGGWCCY 1 cut(s) 190
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
RseI CAYNNNNRTG 1 cut(s) 797
SaqAI TTAA 6 cut(s) 92, 486, 537, 699, 749, 934
SatI GCNGC 5 cut(s) 32, 598, 693, 720, 723
Sau3AI GATC 4 cut(s) 178, 359, 664, 925
Sau96I GGNCC 3 cut(s) 190, 266, 354
SchI GAGTC 4 cut(s) 49, 117, 134, 446
SfoI GGCGCC 1 cut(s) 153
SinI GGWCC 3 cut(s) 190, 266, 354
SmiMI CAYNNNNRTG 1 cut(s) 797
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 5 cut(s) 74, 474, 514, 696, 827
SsiI CCGC 3 cut(s) 32, 598, 720
SspDI GGCGCC 1 cut(s) 151
SspMI CTAG 3 cut(s) 231, 669, 726
StyI CCWWGG 5 cut(s) 221, 379, 455, 668, 708
TaaI ACNGT 4 cut(s) 368, 375, 662, 779
TaiI ACGT 1 cut(s) 837
TaqI TCGA 1 cut(s) 440
TaqII GACCGA 1 cut(s) 254
TasI AATT 5 cut(s) 74, 474, 514, 696, 827
TatI WGTACW 1 cut(s) 332
TauI GCSGC 3 cut(s) 34, 600, 722
Tru1I TTAA 6 cut(s) 92, 486, 537, 699, 749, 934
Tru9I TTAA 6 cut(s) 92, 486, 537, 699, 749, 934
TscAI CASTG 4 cut(s) 41, 380, 413, 894
TseFI GTSAC 3 cut(s) 109, 564, 764
TseI GCWGC 2 cut(s) 692, 722
Tsp45I GTSAC 3 cut(s) 109, 564, 764
TspDTI ATGAA 6 cut(s) 462, 519, 662, 665, 827, 863
TspRI CASTG 4 cut(s) 41, 380, 413, 894
VpaK11BI GGWCC 3 cut(s) 190, 266, 354
XagI CCTNNNNNAGG 1 cut(s) 383
XapI RAATTY 1 cut(s) 74
XmaJI CCTAGG 1 cut(s) 668
XmiI GTMKAC 1 cut(s) 558
XspI CTAG 3 cut(s) 231, 669, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.