RLG00000006172

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0013263
Physical Location & Seq
Reverse (-)
4905471 .. 4908551
3081 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006172

Sequence Viewer

Length: 1212 bp
ATGTCGTCGTTGTGTTCGTTAGGGCTTGCGCCGCAGTTGAGTCATAAGAGCGCGAGCTTCTTGTTCTTATTCAAATTCAAGAGAAGGACTTTAACCTTCGTCCCCAGAATCACTTCTTCTTCTTCTTCAAACGGCGACGACTCTGTTTCGGCGCCAAAACCAAAGCAGTTGGGCTATGATCTTTCTGAGGACCTATTCGGGCTTGAGGGTAATCTGAAGCCAAGGAATGCTAGTTTGGGTGCGCGAAAACCAAGCTCTTGGTTCGGTCCAAATGGTCAGTATATCAGAGAGCTACCATGCCCAAGTTGCCGAGGGAGGGGATATACTCCTTGTACTGAGTGTGGTATAGAAAGGTCCAGATCAGACTGTTCACAGTGCCTCGGCAAGGGCATAATGACTTGTCGTCAGTGCATGGGAGATTGTGTCATATGGGAAGAGTCGATTGATGAACGGCCATGGGAAAAAGCTCGCTCAATTTCTCCACTTAAAGTGAAGGAAGATGATGAAGTTGACAATTTGGAAATAAAACTGGATGTTAAGAGAAAGTCAAAGCGAGTATACCAGTCACCACCTCCTGAAGTTGGACTGAAGATTAGCCGCTCTCTGAAAAGTCTGAATGCCAAAACTGGTCTATTTAGTAAGAGAATGAAGATTATCCACCGTGATCCTAGGCTTCATGCTCAAAGAGTGGCAGCAATTAAGAAAGCTAAGGGAACTGTTGCAGCTAGAAAGCATACCTCTGAAACTTTAAAAGCTTTCTTTAGTGACCCAGAAAACCGTCGCAAAAGAAGCATTTCCATGCAGGGCATAAAATTTTACTGCAGAAACTGTGGGCGGGAGGGGCATAGGAGACACTACTGTCCAGAACTAAAGGCTAGTTTGATGAATAGGCAGTTCATCTGTGGCGTGTGTGGAGAAAAGGGTCATAACAGAAGAACCTGTCCAACGTTGAGCCGTCCCAAAAGCACTGTTAGAAGACCTCACCATTGCAGAATGTGTGATCAAAGAGGCCACAATCGAACGACATGCCCCAAAGTGATTGGACCAAAGTTTATTGATGTAAAGAACGGGTTTCACAGTTCTGTAAGCCGAAGAACATACAAGTGCAAGTTGTGCAAAGAAAATGGGCATAATAGTAGGACATGTCCTACTCATAACAGAAATGTACATCCCTCAAAGATTGGTCATCAATCTGAGGAAGGAAATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC zf-CCHC_2

Protein Analysis

404

Amino Acids

45.59

Weight (kDa)

9.95

Isoelectric Point (pI)

56.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20220 AT5G20220 AT5G20220 AT5G20220
fragaria_vesca FvH4_4g31851
malus_domestica MD13G1078100.v1.1
prunus_persica Prupe.1G269000_v2.0.a1
pyrus_communis pycom13g06760
rosa_chinensis RchiOBHm_Chr4g0440521
rosa_laevigata RLG00000006172
rosa_roxburghii Rroxscaffold_5G00381350
rosa_rugosa Rorug04G0326400
rosa_samantha Rh4AG378100 Rh4BG390700 Rh4CG405400 Rh4DG384400
rosa_wichuraiana Rw4G032360 Rw4G032460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 858
AccB1I GGYRCC 1 cut(s) 151
AccBSI CCGCTC 1 cut(s) 600
AccI GTMKAC 1 cut(s) 558
AccII CGCG 2 cut(s) 53, 244
AciI CCGC 3 cut(s) 32, 598, 835
AclI AACGTT 1 cut(s) 947
AclWI GGATC 1 cut(s) 659
AcoI YGGCCR 1 cut(s) 452
AcsI RAATTY 2 cut(s) 74, 812
AcuI CTGAAG 3 cut(s) 236, 597, 608
AcyI GRCGYC 1 cut(s) 152
AfaI GTAC 2 cut(s) 334, 1167
AfiI CCNNNNNNNGG 3 cut(s) 316, 385, 581
AflIII ACRYGT 1 cut(s) 1142
AgsI TTSAA 3 cut(s) 73, 79, 129
AhdI GACNNNNNGTC 1 cut(s) 402
AjuI GAANNNNNNNTTGG 2 cut(s) 218, 250
AluBI AGCT 7 cut(s) 57, 255, 292, 467, 707, 725, 755
AluI AGCT 7 cut(s) 57, 255, 292, 467, 707, 725, 755
Alw26I GTCTC 1 cut(s) 844
AlwI GGATC 1 cut(s) 659
AlwNI CAGNNNCTG 1 cut(s) 828
AoxI GGCC 2 cut(s) 452, 1009
ApeKI GCWGC 2 cut(s) 692, 722
ApoI RAATTY 2 cut(s) 74, 812
Asp700I GAANNNNTTC 2 cut(s) 112, 793
AspA2I CCTAGG 1 cut(s) 668
AspLEI GCGC 4 cut(s) 31, 53, 154, 244
AspS9I GGNCC 4 cut(s) 190, 266, 354, 1043
AsuHPI GGTGA 2 cut(s) 558, 974
AvaII GGWCC 4 cut(s) 190, 266, 354, 1043
AvrII CCTAGG 1 cut(s) 668
BanI GGYRCC 1 cut(s) 151
BbsI GAAGAC 1 cut(s) 982
BbvI GCAGC 2 cut(s) 704, 734
BceAI ACGGC 3 cut(s) 148, 467, 939
BcgI CGANNNNNNTGC 2 cut(s) 1008, 1042
BclI TGATCA 1 cut(s) 1000
BcoDI GTCTC 1 cut(s) 844
BfaI CTAG 4 cut(s) 231, 669, 726, 876
BfmI CTRYAG 1 cut(s) 820
BfoI RGCGCY 1 cut(s) 155
BisI GCNGC 4 cut(s) 32, 598, 693, 723
BlnI CCTAGG 1 cut(s) 668
BlsI GCNGC 4 cut(s) 33, 599, 694, 724
Bme18I GGWCC 4 cut(s) 190, 266, 354, 1043
BmeRI GACNNNNNGTC 1 cut(s) 402
BmgT120I GGNCC 4 cut(s) 190, 266, 354, 1043
BmiI GGNNCC 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 982
Bpu10I CCTNAGC 1 cut(s) 708
BpuEI CTTGAG 1 cut(s) 224
BsaHI GRCGYC 1 cut(s) 152
BsaJI CCNNGG 5 cut(s) 221, 310, 379, 455, 668
BsaXI ACNNNNNCTCC 2 cut(s) 408, 438
Bsc4I CCNNNNNNNGG 3 cut(s) 316, 385, 581
Bse1I ACTGG 3 cut(s) 534, 562, 631
Bse3DI GCAATG 1 cut(s) 985
BseDI CCNNGG 5 cut(s) 221, 310, 379, 455, 668
BseGI GGATG 2 cut(s) 538, 1168
BseLI CCNNNNNNNGG 3 cut(s) 316, 385, 581
BseMI GCAATG 1 cut(s) 985
BseMII CTCAG 3 cut(s) 177, 327, 1185
BseNI ACTGG 3 cut(s) 534, 562, 631
BseXI GCAGC 2 cut(s) 704, 734
Bsh1236I CGCG 2 cut(s) 53, 244
BshFI GGCC 2 cut(s) 454, 1011
BshNI GGYRCC 1 cut(s) 151
BslFI GGGAC 2 cut(s) 86, 942
BslI CCNNNNNNNGG 3 cut(s) 316, 385, 581
BsmAI GTCTC 1 cut(s) 844
BsmFI GGGAC 2 cut(s) 86, 942
BsmI GAATGC 2 cut(s) 232, 622
BsnI GGCC 2 cut(s) 454, 1011
Bsp1407I TGTACA 1 cut(s) 1165
Bsp143I GATC 4 cut(s) 178, 359, 664, 1000
Bsp19I CCATGG 1 cut(s) 455
BspACI CCGC 3 cut(s) 32, 598, 835
BspANI GGCC 2 cut(s) 454, 1011
BspCNI CTCAG 3 cut(s) 178, 328, 1186
BspFNI CGCG 2 cut(s) 53, 244
BspLI GGNNCC 1 cut(s) 153
BspMAI CTGCAG 1 cut(s) 824
BspPI GGATC 1 cut(s) 659
BspT107I GGYRCC 1 cut(s) 151
BsrBI CCGCTC 1 cut(s) 600
BsrDI GCAATG 1 cut(s) 985
BsrGI TGTACA 1 cut(s) 1165
BsrI ACTGG 3 cut(s) 534, 562, 631
BssECI CCNNGG 5 cut(s) 221, 310, 379, 455, 668
BssMI GATC 4 cut(s) 178, 359, 664, 1000
BssNAI GTATAC 1 cut(s) 559
BssNI GRCGYC 1 cut(s) 152
BssT1I CCWWGG 3 cut(s) 221, 455, 668
Bst1107I GTATAC 1 cut(s) 559
Bst4CI ACNGT 9 cut(s) 368, 375, 662, 718, 779, 830, 860, 970, 1079
Bst6I CTCTTC 1 cut(s) 429
BstACI GRCGYC 1 cut(s) 152
BstAPI GCANNNNNTGC 1 cut(s) 1113
BstAUI TGTACA 1 cut(s) 1165
BstC8I GCNNGC 3 cut(s) 27, 55, 469
BstDEI CTNAG 4 cut(s) 186, 336, 708, 1194
BstDSI CCRYGG 1 cut(s) 455
BstENI CCTNNNNNAGG 1 cut(s) 383
BstF5I GGATG 2 cut(s) 538, 1168
BstFNI CGCG 2 cut(s) 53, 244
BstH2I RGCGCY 1 cut(s) 155
BstHHI GCGC 4 cut(s) 31, 53, 154, 244
BstKTI GATC 4 cut(s) 181, 362, 667, 1003
BstMAI GTCTC 1 cut(s) 844
BstMBI GATC 4 cut(s) 178, 359, 664, 1000
BstMWI GCNNNNNNNGC 5 cut(s) 31, 306, 789, 841, 1113
BstNSI RCATGY 2 cut(s) 1029, 1146
BstSFI CTRYAG 1 cut(s) 820
BstUI CGCG 2 cut(s) 53, 244
BstV1I GCAGC 2 cut(s) 704, 734
BstV2I GAAGAC 1 cut(s) 982
BstXI CCANNNNNNTGG 1 cut(s) 258
BstZ17I GTATAC 1 cut(s) 559
BsuRI GGCC 2 cut(s) 454, 1011
BtgI CCRYGG 1 cut(s) 455
BtsCI GGATG 2 cut(s) 538, 1168
BtsIMutI CAGTG 3 cut(s) 380, 413, 966
Cac8I GCNNGC 3 cut(s) 27, 55, 469
CaiI CAGNNNCTG 1 cut(s) 828
CfoI GCGC 4 cut(s) 31, 53, 154, 244
Cfr13I GGNCC 4 cut(s) 190, 266, 354, 1043
Csp6I GTAC 2 cut(s) 333, 1166
CviAII CATG 7 cut(s) 297, 412, 456, 677, 799, 1026, 1143
CviQI GTAC 2 cut(s) 333, 1166
DdeI CTNAG 4 cut(s) 186, 336, 708, 1194
DinI GGCGCC 1 cut(s) 153
DpnI GATC 4 cut(s) 180, 361, 666, 1002
DpnII GATC 4 cut(s) 178, 359, 664, 1000
DraI TTTAAA 1 cut(s) 750
DrdI GACNNNNNNGTC 1 cut(s) 858
DriI GACNNNNNGTC 1 cut(s) 402
DseDI GACNNNNNNGTC 1 cut(s) 858
EaeI YGGCCR 1 cut(s) 452
Eam1104I CTCTTC 1 cut(s) 429
Eam1105I GACNNNNNGTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 429
Eco130I CCWWGG 3 cut(s) 221, 455, 668
Eco47I GGWCC 4 cut(s) 190, 266, 354, 1043
Eco57I CTGAAG 3 cut(s) 236, 597, 608
EcoNI CCTNNNNNAGG 1 cut(s) 383
EcoO109I RGGNCCY 1 cut(s) 190
EcoT14I CCWWGG 3 cut(s) 221, 455, 668
EgeI GGCGCC 1 cut(s) 153
EheI GGCGCC 1 cut(s) 153
ErhI CCWWGG 3 cut(s) 221, 455, 668
FaeI CATG 7 cut(s) 300, 415, 459, 680, 802, 1029, 1146
FaqI GGGAC 2 cut(s) 86, 942
FatI CATG 7 cut(s) 296, 411, 455, 676, 798, 1025, 1142
FauI CCCGC 1 cut(s) 828
FauNDI CATATG 1 cut(s) 428
FbaI TGATCA 1 cut(s) 1000
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 4 cut(s) 32, 598, 693, 723
FokI GGATG 2 cut(s) 545, 1155
Fsp4HI GCNGC 4 cut(s) 32, 598, 693, 723
FspBI CTAG 4 cut(s) 231, 669, 726, 876
GlaI GCGC 4 cut(s) 30, 52, 153, 243
GluI GCNGC 4 cut(s) 32, 598, 693, 723
HaeII RGCGCY 1 cut(s) 155
HaeIII GGCC 2 cut(s) 454, 1011
HhaI GCGC 4 cut(s) 31, 53, 154, 244
Hin1I GRCGYC 1 cut(s) 152
Hin1II CATG 7 cut(s) 300, 415, 459, 680, 802, 1029, 1146
Hin6I GCGC 4 cut(s) 29, 51, 152, 242
HinP1I GCGC 4 cut(s) 29, 51, 152, 242
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HindIII AAGCTT 1 cut(s) 753
HinfI GANTC 4 cut(s) 40, 108, 140, 437
HphI GGTGA 2 cut(s) 558, 974
Hpy166II GTNNAC 3 cut(s) 371, 511, 559
Hpy188I TCNGA 8 cut(s) 187, 216, 287, 364, 606, 615, 742, 1195
Hpy188III TCNNGA 4 cut(s) 79, 357, 575, 863
Hpy8I GTNNAC 3 cut(s) 371, 511, 559
Hpy99I CGWCG 3 cut(s) 10, 140, 783
HpyAV CCTTC 4 cut(s) 78, 106, 487, 1193
HpyCH4III ACNGT 9 cut(s) 368, 375, 662, 718, 779, 830, 860, 970, 1079
HpyCH4IV ACGT 1 cut(s) 947
HpyCH4V TGCA 7 cut(s) 411, 722, 802, 822, 990, 1107, 1116
HpyF10VI GCNNNNNNNGC 5 cut(s) 31, 306, 789, 841, 1113
HpyF3I CTNAG 4 cut(s) 186, 336, 708, 1194
HpySE526I ACGT 1 cut(s) 947
Hsp92I GRCGYC 1 cut(s) 152
Hsp92II CATG 7 cut(s) 300, 415, 459, 680, 802, 1029, 1146
HspAI GCGC 4 cut(s) 29, 51, 152, 242
KasI GGCGCC 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 1000
Kzo9I GATC 4 cut(s) 178, 359, 664, 1000
Lsp1109I GCAGC 2 cut(s) 704, 734
MaeI CTAG 4 cut(s) 231, 669, 726, 876
MaeII ACGT 1 cut(s) 947
MaeIII GTNAC 2 cut(s) 564, 764
MalI GATC 4 cut(s) 180, 361, 666, 1002
MbiI CCGCTC 1 cut(s) 600
MboI GATC 4 cut(s) 178, 359, 664, 1000
MluCI AATT 5 cut(s) 74, 474, 514, 696, 812
Mly113I GGCGCC 1 cut(s) 152
MlyI GAGTC 3 cut(s) 49, 134, 446
MmeI TCCRAC 2 cut(s) 562, 968
MroXI GAANNNNTTC 2 cut(s) 112, 793
MseI TTAA 5 cut(s) 92, 486, 537, 699, 749
MslI CAYNNNNRTG 2 cut(s) 797, 1102
Mva1269I GAATGC 2 cut(s) 232, 622
MvnI CGCG 2 cut(s) 53, 244
MwoI GCNNNNNNNGC 5 cut(s) 31, 306, 789, 841, 1113
NarI GGCGCC 1 cut(s) 152
NcoI CCATGG 1 cut(s) 455
NdeI CATATG 1 cut(s) 428
NdeII GATC 4 cut(s) 178, 359, 664, 1000
NlaIII CATG 7 cut(s) 300, 415, 459, 680, 802, 1029, 1146
NlaIV GGNNCC 1 cut(s) 153
NmeAIII GCCGAG 2 cut(s) 335, 360
NmuCI GTSAC 2 cut(s) 564, 764
NspI RCATGY 2 cut(s) 1029, 1146
PciI ACATGT 1 cut(s) 1142
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PctI GAATGC 2 cut(s) 232, 622
PdmI GAANNNNTTC 2 cut(s) 112, 793
PfeI GAWTC 1 cut(s) 108
PkrI GCNGC 4 cut(s) 33, 599, 694, 724
PleI GAGTC 3 cut(s) 48, 134, 445
PluTI GGCGCC 1 cut(s) 155
PpsI GAGTC 3 cut(s) 48, 134, 445
PpuMI RGGWCCY 1 cut(s) 190
PscI ACATGT 1 cut(s) 1142
Psp1406I AACGTT 1 cut(s) 947
Psp5II RGGWCCY 1 cut(s) 190
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 4 cut(s) 190, 266, 354, 1043
PspPPI RGGWCCY 1 cut(s) 190
PstI CTGCAG 1 cut(s) 824
PstNI CAGNNNCTG 1 cut(s) 828
RsaI GTAC 2 cut(s) 334, 1167
RsaNI GTAC 2 cut(s) 333, 1166
RseI CAYNNNNRTG 2 cut(s) 797, 1102
SaqAI TTAA 5 cut(s) 92, 486, 537, 699, 749
SatI GCNGC 4 cut(s) 32, 598, 693, 723
Sau3AI GATC 4 cut(s) 178, 359, 664, 1000
Sau96I GGNCC 4 cut(s) 190, 266, 354, 1043
SchI GAGTC 3 cut(s) 49, 134, 446
SfcI CTRYAG 1 cut(s) 820
SfoI GGCGCC 1 cut(s) 153
SinI GGWCC 4 cut(s) 190, 266, 354, 1043
SmiMI CAYNNNNRTG 2 cut(s) 797, 1102
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 5 cut(s) 74, 474, 514, 696, 812
SsiI CCGC 3 cut(s) 32, 598, 835
SspDI GGCGCC 1 cut(s) 151
SspMI CTAG 4 cut(s) 231, 669, 726, 876
StyI CCWWGG 3 cut(s) 221, 455, 668
TaaI ACNGT 9 cut(s) 368, 375, 662, 718, 779, 830, 860, 970, 1079
TaiI ACGT 1 cut(s) 950
TaqI TCGA 2 cut(s) 440, 1018
TaqII GACCGA 1 cut(s) 254
TasI AATT 5 cut(s) 74, 474, 514, 696, 812
TatI WGTACW 2 cut(s) 332, 1165
TauI GCSGC 2 cut(s) 34, 600
TfiI GAWTC 1 cut(s) 108
Tru1I TTAA 5 cut(s) 92, 486, 537, 699, 749
Tru9I TTAA 5 cut(s) 92, 486, 537, 699, 749
TscAI CASTG 3 cut(s) 380, 413, 973
TseFI GTSAC 2 cut(s) 564, 764
TseI GCWGC 2 cut(s) 692, 722
Tsp45I GTSAC 2 cut(s) 564, 764
TspDTI ATGAA 6 cut(s) 462, 519, 662, 665, 886, 899
TspRI CASTG 3 cut(s) 380, 413, 973
VpaK11BI GGWCC 4 cut(s) 190, 266, 354, 1043
XagI CCTNNNNNAGG 1 cut(s) 383
XapI RAATTY 2 cut(s) 74, 812
XceI RCATGY 2 cut(s) 1029, 1146
XmaJI CCTAGG 1 cut(s) 668
XmiI GTMKAC 1 cut(s) 558
XmnI GAANNNNTTC 2 cut(s) 112, 793
XspI CTAG 4 cut(s) 231, 669, 726, 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.