Prupe.1G288600_v2.0.a1

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012513
Physical Location & Seq
Forward (+)
28806080 .. 28808761
2682 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G288600.1

Sequence Viewer

Length: 1176 bp
ATGGGGAACTCATTGGTATGTTTCTCACCATCACACAAGAAACCCAACAACAACAACAACTTCAACAGAGAGCCGTCCAAACGCTCACCATACTCTTCACCTTTCTTGTCCTCCATTGCTAGCACTAGAAGATCAAACGGTTCAAGCAAGAAGAAAGAGATGCTTGCGGATGATTTGCTGCTTCAACAGCAAGCAATAGAGGCTGTTCTGCTGTTCCAGAACCACCAGAAGAACGCTTCATCGATACCGCTTAACCGATCCACTTCCGTGGTTTATCCCTCTCCTGGCCAACAGAATCAGAGCTTTACAAAAAGCTCCAGCTCTAGGCAACGTTTGCGTTCGGATGCTGTCAGCTTTCAGCCCCTAGAGCTTGTTGATAAGCAGGATGTAAAGACTGATGGTCTGGAAACCAATCATTTCATCCTTGTTCATGGAGGTGGCTTTGGTGCTTGGTGTTGGTATAAAAGCATGACACTTTTAGAAGAAAGTGGGTTCAAAGTTGATGCAGTTGACTTGACAGGTTCTGGAGTTCACTCCTTCGATACCAACAGCATTACAAGTCTTGCACAATATGTAAAGCCACTCACTGACATCCTTGAGAAACTTGGGGATGGGAAGAAGGTAATTCTGGTTGGACATGACTTTGGTGGCACATGTATCTCATATGTAATGGAGTTGTTTCCATCAAAAATTGCAAAAGCCATATTCATTTCTGCAGCAATGTTAGCTAGTGGGCAAAGTGCTCTCAATCTGTTTGCTCAACAGACGGGGTCGAATGATCTGATGCGACAGGCTCAGATTTTCTTGTATGCCAATGGGAAGGATCAACCTCCAACAGCCATTAATCTTGACAAAAAATTGGCTGAAGACTTATTGTTCAATCAAAGTCCTGCAAAGGATGTTGCATTAGCATCAGTGTCCATGAGGCCAATCCCTTTTGCACCAGTGACAGAGAAGCTCTCTCTTTCCGGCACGAATTACGGCTCTGTCAGGCGGTTCTTCATAGTCACTCAAGAAGATCATGCCATAAGCGTTCCTCTACAGGAGACCATGATCGAATTAAACCCTCCGGAACAAGTTTTCCGGCTTAAGGGCTCTGATCATGCACCTTTCTTCTCAAGGCCACAGGCTTTGCACAGGATATTAGTAGAGATATCCCAGATTCCTCCAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1

Protein Analysis

392

Amino Acids

43.01

Weight (kDa)

8.8

Isoelectric Point (pI)

49.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012513)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26360 AT1G69240
fragaria_vesca FvH4_4g29850
malus_domestica MD13G1061500.v1.1
prunus_persica Prupe.1G288600_v2.0.a1
pyrus_communis pycom13g05410
rosa_chinensis RchiOBHm_Chr4g0438101
rosa_laevigata RLG00000001449 RLG00000006388
rosa_multiflora Rmu_sc0027297.1_g000003
rosa_roxburghii Rroxscaffold_5G00379240
rosa_rugosa Rorug04G0307000 Rorug04G0307100
rosa_samantha Rh4AG358500 Rh4BG369400 Rh4CG383500 Rh4DG364300
rosa_wichuraiana Rw0G006300 Rw0G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 1069
AciI CCGC 3 cut(s) 167, 248, 994
AclI AACGTT 1 cut(s) 331
AclWI GGATC 2 cut(s) 252, 831
AcoI YGGCCR 1 cut(s) 286
AcuI CTGAAG 1 cut(s) 885
AfiI CCNNNNNNNGG 3 cut(s) 284, 324, 1090
AflII CTTAAG 1 cut(s) 1088
AflIII ACRYGT 1 cut(s) 653
AgsI TTSAA 5 cut(s) 64, 144, 185, 496, 880
AhdI GACNNNNNGTC 1 cut(s) 399
AjnI CCWGG 1 cut(s) 283
AleI CACNNNNGTG 1 cut(s) 266
AloI GAACNNNNNNTCC 2 cut(s) 1065, 1097
AluBI AGCT 7 cut(s) 303, 315, 321, 354, 370, 728, 958
AluI AGCT 7 cut(s) 303, 315, 321, 354, 370, 728, 958
Alw21I GWGCWC 1 cut(s) 745
Alw26I GTCTC 1 cut(s) 1040
AlwI GGATC 2 cut(s) 252, 831
AlwNI CAGNNNCTG 1 cut(s) 524
Aor13HI TCCGGA 1 cut(s) 1069
AoxI GGCC 3 cut(s) 286, 926, 1121
ApeKI GCWGC 2 cut(s) 178, 716
AseI ATTAAT 1 cut(s) 843
AsuHPI GGTGA 3 cut(s) 18, 78, 90
AsuNHI GCTAGC 1 cut(s) 119
BalI TGGCCA 1 cut(s) 288
BanII GRGCYC 1 cut(s) 1097
BbsI GAAGAC 1 cut(s) 873
Bbv12I GWGCWC 1 cut(s) 745
BbvI GCAGC 2 cut(s) 165, 728
BccI CCATC 4 cut(s) 37, 392, 605, 691
BceAI ACGGC 2 cut(s) 58, 997
BciT130I CCWGG 1 cut(s) 285
BclI TGATCA 1 cut(s) 1099
BcoDI GTCTC 1 cut(s) 1040
BfaI CTAG 5 cut(s) 120, 126, 324, 365, 729
BfmI CTRYAG 2 cut(s) 714, 1040
BfrI CTTAAG 1 cut(s) 1088
BisI GCNGC 2 cut(s) 179, 717
BlsI GCNGC 2 cut(s) 180, 718
Bme1390I CCNGG 1 cut(s) 285
BmeRI GACNNNNNGTC 1 cut(s) 399
BmrFI CCNGG 1 cut(s) 285
BmsI GCATC 5 cut(s) 150, 334, 493, 774, 920
BmtI GCTAGC 1 cut(s) 123
BpiI GAAGAC 1 cut(s) 873
BplI GAGNNNNNCTC 2 cut(s) 944, 976
BpmI CTGGAG 2 cut(s) 301, 546
BpuEI CTTGAG 3 cut(s) 617, 996, 1102
Bsa29I ATCGAT 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 1040
BsaJI CCNNGG 1 cut(s) 267
BsaWI WCCGGW 1 cut(s) 1069
Bsc4I CCNNNNNNNGG 3 cut(s) 284, 324, 1090
Bse1I ACTGG 1 cut(s) 944
Bse3DI GCAATG 2 cut(s) 114, 726
BseAI TCCGGA 1 cut(s) 1069
BseBI CCWGG 1 cut(s) 285
BseCI ATCGAT 1 cut(s) 242
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 7 cut(s) 175, 349, 391, 420, 591, 616, 904
BseLI CCNNNNNNNGG 3 cut(s) 284, 324, 1090
BseMI GCAATG 2 cut(s) 114, 726
BseMII CTCAG 1 cut(s) 809
BseNI ACTGG 1 cut(s) 944
BseXI GCAGC 2 cut(s) 165, 728
BshFI GGCC 3 cut(s) 288, 928, 1123
BshVI ATCGAT 1 cut(s) 242
BsiHKAI GWGCWC 1 cut(s) 745
BsiSI CCGG 3 cut(s) 969, 1070, 1084
BslI CCNNNNNNNGG 3 cut(s) 284, 324, 1090
BsmAI GTCTC 1 cut(s) 1040
BsnI GGCC 3 cut(s) 288, 928, 1123
Bso31I GGTCTC 1 cut(s) 1040
Bsp1286I GDGCHC 2 cut(s) 745, 1097
Bsp13I TCCGGA 1 cut(s) 1069
Bsp143I GATC 7 cut(s) 131, 257, 778, 823, 1018, 1053, 1099
BspACI CCGC 3 cut(s) 167, 248, 994
BspANI GGCC 3 cut(s) 288, 928, 1123
BspCNI CTCAG 1 cut(s) 808
BspDI ATCGAT 1 cut(s) 242
BspEI TCCGGA 1 cut(s) 1069
BspMAI CTGCAG 1 cut(s) 718
BspOI GCTAGC 1 cut(s) 123
BspPI GGATC 2 cut(s) 252, 831
BspTI CTTAAG 1 cut(s) 1088
BspTNI GGTCTC 1 cut(s) 1040
BsrDI GCAATG 2 cut(s) 114, 726
BsrI ACTGG 1 cut(s) 944
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 7 cut(s) 131, 257, 778, 823, 1018, 1053, 1099
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 100
BstAFI CTTAAG 1 cut(s) 1088
BstAPI GCANNNNNTGC 1 cut(s) 334
BstC8I GCNNGC 3 cut(s) 121, 165, 192
BstDEI CTNAG 1 cut(s) 795
BstDSI CCRYGG 1 cut(s) 267
BstF5I GGATG 7 cut(s) 175, 349, 391, 420, 591, 616, 904
BstKTI GATC 7 cut(s) 134, 260, 781, 826, 1021, 1056, 1102
BstMAI GTCTC 1 cut(s) 1040
BstMBI GATC 7 cut(s) 131, 257, 778, 823, 1018, 1053, 1099
BstMWI GCNNNNNNNGC 5 cut(s) 187, 200, 334, 367, 725
BstNI CCWGG 1 cut(s) 285
BstNSI RCATGY 1 cut(s) 657
BstSCI CCNGG 1 cut(s) 283
BstSFI CTRYAG 2 cut(s) 714, 1040
BstV1I GCAGC 2 cut(s) 165, 728
BstV2I GAAGAC 1 cut(s) 873
BstXI CCANNNNNNTGG 1 cut(s) 268
Bsu15I ATCGAT 1 cut(s) 242
BsuRI GGCC 3 cut(s) 288, 928, 1123
BsuTUI ATCGAT 1 cut(s) 242
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 7 cut(s) 175, 349, 391, 420, 591, 616, 904
BtsIMutI CAGTG 3 cut(s) 585, 921, 951
Cac8I GCNNGC 3 cut(s) 121, 165, 192
CaiI CAGNNNCTG 1 cut(s) 524
ClaI ATCGAT 1 cut(s) 242
CspCI CAANNNNNGTGG 2 cut(s) 1113, 1148
CviAII CATG 8 cut(s) 431, 469, 638, 654, 922, 1022, 1051, 1103
DdeI CTNAG 1 cut(s) 795
DpnI GATC 7 cut(s) 133, 259, 780, 825, 1020, 1055, 1101
DpnII GATC 7 cut(s) 131, 257, 778, 823, 1018, 1053, 1099
DriI GACNNNNNGTC 1 cut(s) 399
EaeI YGGCCR 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 100
Eam1105I GACNNNNNGTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 1097
Eco31I GGTCTC 1 cut(s) 1040
Eco32I GATATC 1 cut(s) 1155
Eco57I CTGAAG 1 cut(s) 885
EcoRII CCWGG 1 cut(s) 283
EcoRV GATATC 1 cut(s) 1155
EcoT38I GRGCYC 1 cut(s) 1097
FaeI CATG 8 cut(s) 434, 472, 641, 657, 925, 1025, 1054, 1106
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FatI CATG 8 cut(s) 430, 468, 637, 653, 921, 1021, 1050, 1102
FauNDI CATATG 1 cut(s) 664
FbaI TGATCA 1 cut(s) 1099
Fnu4HI GCNGC 2 cut(s) 179, 717
FokI GGATG 7 cut(s) 182, 356, 398, 407, 578, 623, 911
FriOI GRGCYC 1 cut(s) 1097
Fsp4HI GCNGC 2 cut(s) 179, 717
FspBI CTAG 5 cut(s) 120, 126, 324, 365, 729
GluI GCNGC 2 cut(s) 179, 717
GsuI CTGGAG 2 cut(s) 301, 546
HaeIII GGCC 3 cut(s) 288, 928, 1123
HapII CCGG 3 cut(s) 969, 1070, 1084
Hin1II CATG 8 cut(s) 434, 472, 641, 657, 925, 1025, 1054, 1106
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HinfI GANTC 2 cut(s) 295, 1162
HpaII CCGG 3 cut(s) 969, 1070, 1084
HphI GGTGA 3 cut(s) 18, 78, 90
Hpy166II GTNNAC 2 cut(s) 511, 532
Hpy188I TCNGA 5 cut(s) 300, 343, 783, 798, 1099
Hpy188III TCNNGA 6 cut(s) 217, 404, 525, 848, 1013, 1070
Hpy8I GTNNAC 2 cut(s) 511, 532
HpyAV CCTTC 3 cut(s) 547, 613, 814
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4IV ACGT 1 cut(s) 331
HpyCH4V TGCA 9 cut(s) 506, 566, 695, 716, 893, 905, 941, 1106, 1135
HpyF10VI GCNNNNNNNGC 5 cut(s) 187, 200, 334, 367, 725
HpyF3I CTNAG 1 cut(s) 795
HpySE526I ACGT 1 cut(s) 331
Hsp92II CATG 8 cut(s) 434, 472, 641, 657, 925, 1025, 1054, 1106
Kpn2I TCCGGA 1 cut(s) 1069
Ksp22I TGATCA 1 cut(s) 1099
Kzo9I GATC 7 cut(s) 131, 257, 778, 823, 1018, 1053, 1099
LmnI GCTCC 1 cut(s) 320
Lsp1109I GCAGC 2 cut(s) 165, 728
LweI GCATC 5 cut(s) 150, 334, 493, 774, 920
MaeI CTAG 5 cut(s) 120, 126, 324, 365, 729
MaeII ACGT 1 cut(s) 331
MaeIII GTNAC 2 cut(s) 946, 1006
MalI GATC 7 cut(s) 133, 259, 780, 825, 1020, 1055, 1101
MboI GATC 7 cut(s) 131, 257, 778, 823, 1018, 1053, 1099
MhlI GDGCHC 2 cut(s) 745, 1097
MlsI TGGCCA 1 cut(s) 288
MluCI AATT 6 cut(s) 624, 690, 857, 976, 1058, 1170
MluNI TGGCCA 1 cut(s) 288
MmeI TCCRAC 2 cut(s) 613, 857
MnlI CCTC 9 cut(s) 121, 193, 289, 428, 840, 918, 1047, 1077, 1176
Mox20I TGGCCA 1 cut(s) 288
MroI TCCGGA 1 cut(s) 1069
MscI TGGCCA 1 cut(s) 288
MseI TTAA 4 cut(s) 252, 843, 1061, 1089
MslI CAYNNNNRTG 3 cut(s) 16, 266, 435
Msp20I TGGCCA 1 cut(s) 288
MspCI CTTAAG 1 cut(s) 1088
MspI CCGG 3 cut(s) 969, 1070, 1084
MspR9I CCNGG 1 cut(s) 285
MvaI CCWGG 1 cut(s) 285
MwoI GCNNNNNNNGC 5 cut(s) 187, 200, 334, 367, 725
NdeI CATATG 1 cut(s) 664
NdeII GATC 7 cut(s) 131, 257, 778, 823, 1018, 1053, 1099
NheI GCTAGC 1 cut(s) 119
NlaIII CATG 8 cut(s) 434, 472, 641, 657, 925, 1025, 1054, 1106
NmuCI GTSAC 2 cut(s) 946, 1006
NspI RCATGY 1 cut(s) 657
OliI CACNNNNGTG 1 cut(s) 266
PciI ACATGT 1 cut(s) 653
PfeI GAWTC 2 cut(s) 295, 1162
PflFI GACNNNGTC 1 cut(s) 769
PkrI GCNGC 2 cut(s) 180, 718
PscI ACATGT 1 cut(s) 653
PshBI ATTAAT 1 cut(s) 843
Psp1406I AACGTT 1 cut(s) 331
Psp6I CCWGG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 283
PstI CTGCAG 1 cut(s) 718
PstNI CAGNNNCTG 1 cut(s) 524
PsyI GACNNNGTC 1 cut(s) 769
RseI CAYNNNNRTG 3 cut(s) 16, 266, 435
SaqAI TTAA 4 cut(s) 252, 843, 1061, 1089
SatI GCNGC 2 cut(s) 179, 717
Sau3AI GATC 7 cut(s) 131, 257, 778, 823, 1018, 1053, 1099
ScrFI CCNGG 1 cut(s) 285
SduI GDGCHC 2 cut(s) 745, 1097
SfaNI GCATC 5 cut(s) 150, 334, 493, 774, 920
SfcI CTRYAG 2 cut(s) 714, 1040
SmiMI CAYNNNNRTG 3 cut(s) 16, 266, 435
SmlI CTYRAG 4 cut(s) 596, 1011, 1088, 1117
SmoI CTYRAG 4 cut(s) 596, 1011, 1088, 1117
Sse9I AATT 6 cut(s) 624, 690, 857, 976, 1058, 1170
SsiI CCGC 3 cut(s) 167, 248, 994
SspMI CTAG 5 cut(s) 120, 126, 324, 365, 729
StyD4I CCNGG 1 cut(s) 283
TaaI ACNGT 1 cut(s) 140
TaiI ACGT 1 cut(s) 334
TaqI TCGA 4 cut(s) 242, 540, 773, 1056
TasI AATT 6 cut(s) 624, 690, 857, 976, 1058, 1170
TfiI GAWTC 2 cut(s) 295, 1162
Tru1I TTAA 4 cut(s) 252, 843, 1061, 1089
Tru9I TTAA 4 cut(s) 252, 843, 1061, 1089
TscAI CASTG 3 cut(s) 592, 921, 951
TseFI GTSAC 2 cut(s) 946, 1006
TseI GCWGC 2 cut(s) 178, 716
Tsp45I GTSAC 2 cut(s) 946, 1006
TspDTI ATGAA 5 cut(s) 228, 409, 419, 697, 991
TspGWI ACGGA 1 cut(s) 256
TspRI CASTG 3 cut(s) 592, 921, 951
Tth111I GACNNNGTC 1 cut(s) 769
Vha464I CTTAAG 1 cut(s) 1088
VspI ATTAAT 1 cut(s) 843
XceI RCATGY 1 cut(s) 657
XspI CTAG 5 cut(s) 120, 126, 324, 365, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.