Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G68930 AT1G68930 |
| fragaria_vesca | FvH4_4g28920 |
| malus_domestica | MD13G1054800.v1.1 MD16G1053700.v1.1 |
| prunus_persica | Prupe.1G297100_v2.0.a1 |
| pyrus_communis | pycom13g04860 |
| rosa_chinensis | RchiOBHm_Chr4g0437061 |
| rosa_laevigata | RLG00000006472 |
| rosa_multiflora | Rmu_co8326179.1_g000001 Rmu_sc0008325.1_g000001 Rmu_sc0028518.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00378140 |
| rosa_rugosa | Rorug04G0298000 |
| rosa_samantha | Rh4AG352500 Rh4BG361800 Rh4CG376100 Rh4DG356000 |
| rosa_wichuraiana | Rw4G030860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 2429 |
| Acc36I | ACCTGC | 1 cut(s) | 2214 |
| AccB1I | GGYRCC | 2 cut(s) | 1169, 2247 |
| AccI | GTMKAC | 2 cut(s) | 472, 1651 |
| AccII | CGCG | 1 cut(s) | 2318 |
| AciI | CCGC | 6 cut(s) | 399, 454, 834, 840, 2109, 2316 |
| AclI | AACGTT | 1 cut(s) | 419 |
| AclWI | GGATC | 3 cut(s) | 813, 1533, 1847 |
| AcoI | YGGCCR | 2 cut(s) | 1039, 1779 |
| AcsI | RAATTY | 5 cut(s) | 316, 368, 497, 2306, 2413 |
| AcuI | CTGAAG | 2 cut(s) | 1182, 2221 |
| AcyI | GRCGYC | 1 cut(s) | 2426 |
| AdeI | CACNNNGTG | 1 cut(s) | 2295 |
| AfaI | GTAC | 3 cut(s) | 149, 548, 1052 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 840, 1788 |
| AflII | CTTAAG | 2 cut(s) | 166, 796 |
| AflIII | ACRYGT | 2 cut(s) | 543, 580 |
| AjnI | CCWGG | 4 cut(s) | 1119, 1316, 1825, 2420 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2464, 2496 |
| Alw21I | GWGCWC | 3 cut(s) | 931, 1646, 1863 |
| Alw26I | GTCTC | 2 cut(s) | 1318, 1358 |
| Alw44I | GTGCAC | 1 cut(s) | 1859 |
| AlwI | GGATC | 3 cut(s) | 813, 1533, 1847 |
| AoxI | GGCC | 6 cut(s) | 844, 1039, 1392, 1629, 1779, 2351 |
| ApaLI | GTGCAC | 1 cut(s) | 1859 |
| ApeKI | GCWGC | 8 cut(s) | 45, 753, 968, 1446, 1685, 1754, 2209, 2371 |
| ApoI | RAATTY | 5 cut(s) | 316, 368, 497, 2306, 2413 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1357, 1389, 2435, 2467 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 120, 1695 |
| AspS9I | GGNCC | 4 cut(s) | 714, 844, 1393, 1629 |
| AsuC2I | CCSGG | 1 cut(s) | 637 |
| AsuHPI | GGTGA | 6 cut(s) | 194, 625, 1231, 2140, 2248, 2492 |
| AsuNHI | GCTAGC | 1 cut(s) | 1724 |
| AvaII | GGWCC | 1 cut(s) | 714 |
| BaeGI | GKGCMC | 3 cut(s) | 1174, 1863, 2252 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2328, 2361 |
| BalI | TGGCCA | 2 cut(s) | 1041, 1781 |
| BanI | GGYRCC | 2 cut(s) | 1169, 2247 |
| BanII | GRGCYC | 2 cut(s) | 1646, 1713 |
| BauI | CACGAG | 1 cut(s) | 1460 |
| BbsI | GAAGAC | 1 cut(s) | 1275 |
| Bbv12I | GWGCWC | 3 cut(s) | 931, 1646, 1863 |
| BbvCI | CCTCAGC | 1 cut(s) | 357 |
| BbvI | GCAGC | 8 cut(s) | 32, 765, 955, 1458, 1697, 1741, 2196, 2383 |
| BccI | CCATC | 5 cut(s) | 296, 1284, 1617, 2520, 2526 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 418, 452 |
| BciT130I | CCWGG | 4 cut(s) | 1121, 1318, 1827, 2422 |
| BclI | TGATCA | 1 cut(s) | 630 |
| BcnI | CCSGG | 1 cut(s) | 637 |
| BcoDI | GTCTC | 2 cut(s) | 1318, 1358 |
| BfaI | CTAG | 5 cut(s) | 299, 1151, 1193, 1700, 1725 |
| BfmI | CTRYAG | 2 cut(s) | 969, 2369 |
| BfrI | CTTAAG | 2 cut(s) | 166, 796 |
| BfuAI | ACCTGC | 1 cut(s) | 2214 |
| BglII | AGATCT | 2 cut(s) | 276, 2224 |
| BisI | GCNGC | 9 cut(s) | 46, 399, 754, 969, 1447, 1686, 1755, 2210, 2372 |
| BlpI | GCTNAGC | 1 cut(s) | 1640 |
| BlsI | GCNGC | 9 cut(s) | 47, 400, 755, 970, 1448, 1687, 1756, 2211, 2373 |
| Bme1390I | CCNGG | 5 cut(s) | 637, 1121, 1318, 1827, 2422 |
| Bme18I | GGWCC | 1 cut(s) | 714 |
| BmgT120I | GGNCC | 4 cut(s) | 714, 844, 1393, 1629 |
| BmiI | GGNNCC | 5 cut(s) | 397, 845, 1171, 1824, 2249 |
| BmrFI | CCNGG | 5 cut(s) | 637, 1121, 1318, 1827, 2422 |
| BmrI | ACTGGG | 3 cut(s) | 1168, 1339, 2336 |
| BmtI | GCTAGC | 1 cut(s) | 1728 |
| BmuI | ACTGGG | 3 cut(s) | 1168, 1339, 2336 |
| BpiI | GAAGAC | 1 cut(s) | 1275 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1443, 1475 |
| BpmI | CTGGAG | 2 cut(s) | 1940, 2263 |
| Bpu10I | CCTNAGC | 1 cut(s) | 357 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1640 |
| BpuEI | CTTGAG | 1 cut(s) | 1726 |
| BpuMI | CCSGG | 1 cut(s) | 637 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1298 |
| BsaHI | GRCGYC | 1 cut(s) | 2426 |
| BsaJI | CCNNGG | 9 cut(s) | 293, 534, 855, 1119, 1120, 1326, 1396, 1491, 2420 |
| BsaWI | WCCGGW | 1 cut(s) | 411 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 840, 1788 |
| Bse1I | ACTGG | 4 cut(s) | 1174, 1345, 1882, 2342 |
| Bse3DI | GCAATG | 1 cut(s) | 1029 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1298 |
| BseBI | CCWGG | 4 cut(s) | 1121, 1318, 1827, 2422 |
| BseDI | CCNNGG | 9 cut(s) | 293, 534, 855, 1119, 1120, 1326, 1396, 1491, 2420 |
| BseGI | GGATG | 7 cut(s) | 1312, 1392, 1609, 1835, 2390, 2437, 2512 |
| BseJI | GATNNNNATC | 1 cut(s) | 1298 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 840, 1788 |
| BseMI | GCAATG | 1 cut(s) | 1029 |
| BseMII | CTCAG | 5 cut(s) | 348, 888, 1567, 1631, 2207 |
| BseNI | ACTGG | 4 cut(s) | 1174, 1345, 1882, 2342 |
| BseSI | GKGCMC | 3 cut(s) | 1174, 1863, 2252 |
| BseXI | GCAGC | 8 cut(s) | 32, 765, 955, 1458, 1697, 1741, 2196, 2383 |
| BsgI | GTGCAG | 1 cut(s) | 2241 |
| Bsh1236I | CGCG | 1 cut(s) | 2318 |
| Bsh1285I | CGRYCG | 1 cut(s) | 286 |
| BshFI | GGCC | 6 cut(s) | 846, 1041, 1394, 1631, 1781, 2353 |
| BshNI | GGYRCC | 2 cut(s) | 1169, 2247 |
| BsiEI | CGRYCG | 1 cut(s) | 286 |
| BsiHKAI | GWGCWC | 3 cut(s) | 931, 1646, 1863 |
| BsiSI | CCGG | 3 cut(s) | 412, 599, 636 |
| BsiWI | CGTACG | 1 cut(s) | 147 |
| BslFI | GGGAC | 1 cut(s) | 516 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 840, 1788 |
| BsmAI | GTCTC | 2 cut(s) | 1318, 1358 |
| BsmFI | GGGAC | 1 cut(s) | 516 |
| BsnI | GGCC | 6 cut(s) | 846, 1041, 1394, 1631, 1781, 2353 |
| Bsp1286I | GDGCHC | 6 cut(s) | 931, 1174, 1646, 1713, 1863, 2252 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1640 |
| Bsp19I | CCATGG | 2 cut(s) | 1396, 1491 |
| BspACI | CCGC | 6 cut(s) | 399, 454, 834, 840, 2109, 2316 |
| BspANI | GGCC | 6 cut(s) | 846, 1041, 1394, 1631, 1781, 2353 |
| BspCNI | CTCAG | 5 cut(s) | 349, 889, 1566, 1632, 2208 |
| BspFNI | CGCG | 1 cut(s) | 2318 |
| BspHI | TCATGA | 1 cut(s) | 1981 |
| BspLI | GGNNCC | 5 cut(s) | 397, 845, 1171, 1824, 2249 |
| BspMAI | CTGCAG | 2 cut(s) | 973, 2373 |
| BspMI | ACCTGC | 1 cut(s) | 2214 |
| BspOI | GCTAGC | 1 cut(s) | 1728 |
| BspPI | GGATC | 3 cut(s) | 813, 1533, 1847 |
| BspT107I | GGYRCC | 2 cut(s) | 1169, 2247 |
| BspTI | CTTAAG | 2 cut(s) | 166, 796 |
| BsrDI | GCAATG | 1 cut(s) | 1029 |
| BsrI | ACTGG | 4 cut(s) | 1174, 1345, 1882, 2342 |
| BssECI | CCNNGG | 9 cut(s) | 293, 534, 855, 1119, 1120, 1326, 1396, 1491, 2420 |
| BssNI | GRCGYC | 1 cut(s) | 2426 |
| BssSI | CACGAG | 1 cut(s) | 1460 |
| BssT1I | CCWWGG | 5 cut(s) | 534, 855, 1326, 1396, 1491 |
| Bst2BI | CACGAG | 1 cut(s) | 1460 |
| Bst2UI | CCWGG | 4 cut(s) | 1121, 1318, 1827, 2422 |
| Bst6I | CTCTTC | 3 cut(s) | 855, 1701, 1941 |
| BstACI | GRCGYC | 1 cut(s) | 2426 |
| BstAFI | CTTAAG | 2 cut(s) | 166, 796 |
| BstDEI | CTNAG | 7 cut(s) | 357, 897, 1159, 1553, 1640, 2099, 2216 |
| BstDSI | CCRYGG | 2 cut(s) | 1396, 1491 |
| BstF5I | GGATG | 7 cut(s) | 1312, 1392, 1609, 1835, 2390, 2437, 2512 |
| BstFNI | CGCG | 1 cut(s) | 2318 |
| BstMAI | GTCTC | 2 cut(s) | 1318, 1358 |
| BstMCI | CGRYCG | 1 cut(s) | 286 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 484, 1151, 2115, 2247 |
| BstNI | CCWGG | 4 cut(s) | 1121, 1318, 1827, 2422 |
| BstNSI | RCATGY | 5 cut(s) | 292, 338, 547, 840, 1087 |
| BstSCI | CCNGG | 5 cut(s) | 635, 1119, 1316, 1825, 2420 |
| BstSFI | CTRYAG | 2 cut(s) | 969, 2369 |
| BstSLI | GKGCMC | 3 cut(s) | 1174, 1863, 2252 |
| BstUI | CGCG | 1 cut(s) | 2318 |
| BstV1I | GCAGC | 8 cut(s) | 32, 765, 955, 1458, 1697, 1741, 2196, 2383 |
| BstV2I | GAAGAC | 1 cut(s) | 1275 |
| BstX2I | RGATCY | 2 cut(s) | 276, 2224 |
| BstYI | RGATCY | 2 cut(s) | 276, 2224 |
| BsuRI | GGCC | 6 cut(s) | 846, 1041, 1394, 1631, 1781, 2353 |
| BtgI | CCRYGG | 2 cut(s) | 1396, 1491 |
| BtsCI | GGATG | 7 cut(s) | 1312, 1392, 1609, 1835, 2390, 2437, 2512 |
| BtsIMutI | CAGTG | 3 cut(s) | 82, 1060, 1180 |
| BveI | ACCTGC | 1 cut(s) | 2214 |
| CciI | TCATGA | 1 cut(s) | 1981 |
| Cfr13I | GGNCC | 4 cut(s) | 714, 844, 1393, 1629 |
| CseI | GACGC | 2 cut(s) | 327, 581 |
| Csp6I | GTAC | 3 cut(s) | 148, 547, 1051 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 415, 450, 1011, 1046 |
| CviQI | GTAC | 3 cut(s) | 148, 547, 1051 |
| DdeI | CTNAG | 7 cut(s) | 357, 897, 1159, 1553, 1640, 2099, 2216 |
| DraIII | CACNNNGTG | 1 cut(s) | 2295 |
| EaeI | YGGCCR | 2 cut(s) | 1039, 1779 |
| Eam1104I | CTCTTC | 3 cut(s) | 855, 1701, 1941 |
| EarI | CTCTTC | 3 cut(s) | 855, 1701, 1941 |
| Ecl136II | GAGCTC | 1 cut(s) | 1644 |
| Eco130I | CCWWGG | 5 cut(s) | 534, 855, 1326, 1396, 1491 |
| Eco24I | GRGCYC | 2 cut(s) | 1646, 1713 |
| Eco47I | GGWCC | 1 cut(s) | 714 |
| Eco53kI | GAGCTC | 1 cut(s) | 1644 |
| Eco57I | CTGAAG | 2 cut(s) | 1182, 2221 |
| EcoICRI | GAGCTC | 1 cut(s) | 1644 |
| EcoO109I | RGGNCCY | 1 cut(s) | 844 |
| EcoRI | GAATTC | 2 cut(s) | 316, 2306 |
| EcoRII | CCWGG | 4 cut(s) | 1119, 1316, 1825, 2420 |
| EcoT14I | CCWWGG | 5 cut(s) | 534, 855, 1326, 1396, 1491 |
| EcoT38I | GRGCYC | 2 cut(s) | 1646, 1713 |
| ErhI | CCWWGG | 5 cut(s) | 534, 855, 1326, 1396, 1491 |
| FaqI | GGGAC | 1 cut(s) | 516 |
| FauI | CCCGC | 2 cut(s) | 833, 2102 |
| FbaI | TGATCA | 1 cut(s) | 630 |
| FblI | GTMKAC | 2 cut(s) | 472, 1651 |
| Fnu4HI | GCNGC | 9 cut(s) | 46, 399, 754, 969, 1447, 1686, 1755, 2210, 2372 |
| FokI | GGATG | 7 cut(s) | 1319, 1399, 1596, 1842, 2377, 2444, 2499 |
| FriOI | GRGCYC | 2 cut(s) | 1646, 1713 |
| Fsp4HI | GCNGC | 9 cut(s) | 46, 399, 754, 969, 1447, 1686, 1755, 2210, 2372 |
| FspBI | CTAG | 5 cut(s) | 299, 1151, 1193, 1700, 1725 |
| GluI | GCNGC | 9 cut(s) | 46, 399, 754, 969, 1447, 1686, 1755, 2210, 2372 |
| GsuI | CTGGAG | 2 cut(s) | 1940, 2263 |
| HaeIII | GGCC | 6 cut(s) | 846, 1041, 1394, 1631, 1781, 2353 |
| HapII | CCGG | 3 cut(s) | 412, 599, 636 |
| HgaI | GACGC | 2 cut(s) | 327, 581 |
| Hin1I | GRCGYC | 1 cut(s) | 2426 |
| HincII | GTYRAC | 3 cut(s) | 387, 473, 541 |
| HindII | GTYRAC | 3 cut(s) | 387, 473, 541 |
| HindIII | AAGCTT | 2 cut(s) | 1156, 1356 |
| HpaI | GTTAAC | 1 cut(s) | 387 |
| HpaII | CCGG | 3 cut(s) | 412, 599, 636 |
| HphI | GGTGA | 6 cut(s) | 194, 625, 1231, 2140, 2248, 2492 |
| Hpy166II | GTNNAC | 8 cut(s) | 387, 463, 473, 541, 714, 1017, 1652, 1861 |
| Hpy188I | TCNGA | 7 cut(s) | 265, 670, 1900, 1905, 1999, 2431, 2471 |
| Hpy188III | TCNNGA | 9 cut(s) | 113, 142, 569, 764, 985, 1613, 1700, 1982, 2530 |
| Hpy8I | GTNNAC | 8 cut(s) | 387, 463, 473, 541, 714, 1017, 1652, 1861 |
| Hpy99I | CGWCG | 3 cut(s) | 148, 1415, 2431 |
| HpyAV | CCTTC | 7 cut(s) | 785, 968, 1160, 1559, 1560, 2434, 2486 |
| HpyCH4IV | ACGT | 4 cut(s) | 146, 419, 580, 2426 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 484, 1151, 2115, 2247 |
| HpyF3I | CTNAG | 7 cut(s) | 357, 897, 1159, 1553, 1640, 2099, 2216 |
| HpySE526I | ACGT | 4 cut(s) | 146, 419, 580, 2426 |
| Hsp92I | GRCGYC | 1 cut(s) | 2426 |
| Ksp22I | TGATCA | 1 cut(s) | 630 |
| KspAI | GTTAAC | 1 cut(s) | 387 |
| LmnI | GCTCC | 3 cut(s) | 84, 395, 2514 |
| Lsp1109I | GCAGC | 8 cut(s) | 32, 765, 955, 1458, 1697, 1741, 2196, 2383 |
| MaeI | CTAG | 5 cut(s) | 299, 1151, 1193, 1700, 1725 |
| MaeII | ACGT | 4 cut(s) | 146, 419, 580, 2426 |
| MaeIII | GTNAC | 6 cut(s) | 26, 86, 1079, 1237, 1417, 2201 |
| MfeI | CAATTG | 3 cut(s) | 1368, 1620, 2040 |
| MflI | RGATCY | 2 cut(s) | 276, 2224 |
| MhlI | GDGCHC | 6 cut(s) | 931, 1174, 1646, 1713, 1863, 2252 |
| MlsI | TGGCCA | 2 cut(s) | 1041, 1781 |
| MluNI | TGGCCA | 2 cut(s) | 1041, 1781 |
| MlyI | GAGTC | 4 cut(s) | 457, 518, 1265, 1452 |
| MmeI | TCCRAC | 3 cut(s) | 1817, 2214, 2409 |
| Mox20I | TGGCCA | 2 cut(s) | 1041, 1781 |
| MroXI | GAANNNNTTC | 2 cut(s) | 120, 1695 |
| MscI | TGGCCA | 2 cut(s) | 1041, 1781 |
| MseI | TTAA | 6 cut(s) | 167, 386, 797, 1787, 2016, 2091 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1614 |
| Msp20I | TGGCCA | 2 cut(s) | 1041, 1781 |
| MspA1I | CMGCKG | 3 cut(s) | 454, 1688, 2241 |
| MspCI | CTTAAG | 2 cut(s) | 166, 796 |
| MspI | CCGG | 3 cut(s) | 412, 599, 636 |
| MspR9I | CCNGG | 5 cut(s) | 637, 1121, 1318, 1827, 2422 |
| MunI | CAATTG | 3 cut(s) | 1368, 1620, 2040 |
| MvaI | CCWGG | 4 cut(s) | 1121, 1318, 1827, 2422 |
| MvnI | CGCG | 1 cut(s) | 2318 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 484, 1151, 2115, 2247 |
| NciI | CCSGG | 1 cut(s) | 637 |
| NcoI | CCATGG | 2 cut(s) | 1396, 1491 |
| NheI | GCTAGC | 1 cut(s) | 1724 |
| NlaIV | GGNNCC | 5 cut(s) | 397, 845, 1171, 1824, 2249 |
| NmeAIII | GCCGAG | 2 cut(s) | 318, 1583 |
| NmuCI | GTSAC | 3 cut(s) | 86, 1079, 1237 |
| NspI | RCATGY | 5 cut(s) | 292, 338, 547, 840, 1087 |
| PaeI | GCATGC | 3 cut(s) | 292, 338, 840 |
| PagI | TCATGA | 1 cut(s) | 1981 |
| PasI | CCCWGGG | 1 cut(s) | 1120 |
| PciI | ACATGT | 1 cut(s) | 543 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 335, 425 |
| PdmI | GAANNNNTTC | 2 cut(s) | 120, 1695 |
| PfeI | GAWTC | 8 cut(s) | 565, 665, 701, 1487, 1587, 1691, 1717, 1994 |
| Pfl23II | CGTACG | 1 cut(s) | 147 |
| PfoI | TCCNGGA | 1 cut(s) | 1316 |
| PkrI | GCNGC | 9 cut(s) | 47, 400, 755, 970, 1448, 1687, 1756, 2211, 2373 |
| Ple19I | CGATCG | 1 cut(s) | 286 |
| PleI | GAGTC | 4 cut(s) | 456, 517, 1265, 1452 |
| PpsI | GAGTC | 4 cut(s) | 456, 517, 1265, 1452 |
| PscI | ACATGT | 1 cut(s) | 543 |
| Psp124BI | GAGCTC | 1 cut(s) | 1646 |
| Psp1406I | AACGTT | 1 cut(s) | 419 |
| Psp6I | CCWGG | 4 cut(s) | 1119, 1316, 1825, 2420 |
| PspGI | CCWGG | 4 cut(s) | 1119, 1316, 1825, 2420 |
| PspLI | CGTACG | 1 cut(s) | 147 |
| PspN4I | GGNNCC | 5 cut(s) | 397, 845, 1171, 1824, 2249 |
| PspPI | GGNCC | 4 cut(s) | 714, 844, 1393, 1629 |
| PstI | CTGCAG | 2 cut(s) | 973, 2373 |
| PsuI | RGATCY | 2 cut(s) | 276, 2224 |
| PvuI | CGATCG | 1 cut(s) | 286 |
| PvuII | CAGCTG | 2 cut(s) | 1688, 2241 |
| RsaI | GTAC | 3 cut(s) | 149, 548, 1052 |
| RsaNI | GTAC | 3 cut(s) | 148, 547, 1051 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1614 |
| SacI | GAGCTC | 1 cut(s) | 1646 |
| SalI | GTCGAC | 1 cut(s) | 471 |
| SaqAI | TTAA | 6 cut(s) | 167, 386, 797, 1787, 2016, 2091 |
| SatI | GCNGC | 9 cut(s) | 46, 399, 754, 969, 1447, 1686, 1755, 2210, 2372 |
| Sau96I | GGNCC | 4 cut(s) | 714, 844, 1393, 1629 |
| SchI | GAGTC | 4 cut(s) | 457, 518, 1265, 1452 |
| ScrFI | CCNGG | 5 cut(s) | 637, 1121, 1318, 1827, 2422 |
| SduI | GDGCHC | 6 cut(s) | 931, 1174, 1646, 1713, 1863, 2252 |
| SfcI | CTRYAG | 2 cut(s) | 969, 2369 |
| SinI | GGWCC | 1 cut(s) | 714 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1614 |
| SmlI | CTYRAG | 3 cut(s) | 166, 796, 1741 |
| SmoI | CTYRAG | 3 cut(s) | 166, 796, 1741 |
| SphI | GCATGC | 3 cut(s) | 292, 338, 840 |
| SsiI | CCGC | 6 cut(s) | 399, 454, 834, 840, 2109, 2316 |
| SspMI | CTAG | 5 cut(s) | 299, 1151, 1193, 1700, 1725 |
| SstI | GAGCTC | 1 cut(s) | 1646 |
| StyD4I | CCNGG | 5 cut(s) | 635, 1119, 1316, 1825, 2420 |
| StyI | CCWWGG | 5 cut(s) | 534, 855, 1326, 1396, 1491 |
| TaiI | ACGT | 4 cut(s) | 149, 422, 583, 2429 |
| TaqI | TCGA | 9 cut(s) | 189, 282, 446, 472, 507, 704, 1266, 1668, 2348 |
| TatI | WGTACW | 1 cut(s) | 546 |
| TauI | GCSGC | 1 cut(s) | 401 |
| TfiI | GAWTC | 8 cut(s) | 565, 665, 701, 1487, 1587, 1691, 1717, 1994 |
| Tru1I | TTAA | 6 cut(s) | 167, 386, 797, 1787, 2016, 2091 |
| Tru9I | TTAA | 6 cut(s) | 167, 386, 797, 1787, 2016, 2091 |
| TscAI | CASTG | 3 cut(s) | 89, 1060, 1187 |
| TseFI | GTSAC | 3 cut(s) | 86, 1079, 1237 |
| TseI | GCWGC | 8 cut(s) | 45, 753, 968, 1446, 1685, 1754, 2209, 2371 |
| Tsp45I | GTSAC | 3 cut(s) | 86, 1079, 1237 |
| TspGWI | ACGGA | 4 cut(s) | 226, 404, 408, 1428 |
| TspRI | CASTG | 3 cut(s) | 89, 1060, 1187 |
| Vha464I | CTTAAG | 2 cut(s) | 166, 796 |
| VneI | GTGCAC | 1 cut(s) | 1859 |
| VpaK11BI | GGWCC | 1 cut(s) | 714 |
| XapI | RAATTY | 5 cut(s) | 316, 368, 497, 2306, 2413 |
| XbaI | TCTAGA | 1 cut(s) | 1699 |
| XceI | RCATGY | 5 cut(s) | 292, 338, 547, 840, 1087 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1833 |
| XmiI | GTMKAC | 2 cut(s) | 472, 1651 |
| XmnI | GAANNNNTTC | 2 cut(s) | 120, 1695 |
| XspI | CTAG | 5 cut(s) | 299, 1151, 1193, 1700, 1725 |
| ZraI | GACGTC | 1 cut(s) | 2427 |