Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8326179.1

Orthogroup ID

OG0012518

Physical Location & Seq

Genomic Coordinates Reverse (-)

13 .. 951

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8326179.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atgaacatccgggatgaagtctcctggtcagcattggtttcagggtatgcccggtttggaaaagccaatgagacaattgctttgtttgagaggatgttggcccaggggttaaaacctgatggagttactttcataggggttctttcagcctgtagtagagcaggactagtagagagaggacatcagtattttgaatcaatgactaaagtacatggaattacaccgattcttgatcactacacttgcatcattgacctgctcagccgagcaggaagattagaagaagcaagaagcttcattaataagatgcctatgcgtcctgatgcaattggttgggccaccttgctaagctcatgtagatttcgctctaatatggagattggaaaatgggcagctaagtctcttcgagaaatagatccccagaatcctgcaagctatatcttgctctcaagcatatatgctgctaaagggaagtgggatgaagtgtctaaattgaggacaggaatgagagataaggggatcagaaaggaaccaggatgcagttggattaaatataagagcagagtacacatcttttcagcagatgaccagtcaagtccattttcagatcagatatacgctgagctggagaaactatattctaaaatgatagaagaaggatatgagccagatgtgagttcagttctccatgatgttgacgaatcacaaaagatgaagatgcttaattaccacagtgagaggcttgcaattgcctttggattgatatttattccttctggccttcctattcgagttgttaaaaaccttagagtatgtggggactgccacaatgccactaaatatatttccaagatcaccaagagagagatacttgtaagagatgctgtccgctaccacttatttaaagacggaacttgttcatgtggagatttttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

312

Amino Acids

35.37

Weight (kDa)

8.9

Isoelectric Point (pI)

45.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68930 AT1G68930
fragaria_vesca	FvH4_4g28920
malus_domestica	MD13G1054800.v1.1 MD16G1053700.v1.1
prunus_persica	Prupe.1G297100_v2.0.a1
pyrus_communis	pycom13g04860
rosa_chinensis	RchiOBHm_Chr4g0437061
rosa_laevigata	RLG00000006472
rosa_multiflora	Rmu_co8326179.1_g000001 Rmu_sc0008325.1_g000001 Rmu_sc0028518.1_g000001
rosa_roxburghii	Rroxscaffold_5G00378140
rosa_rugosa	Rorug04G0298000
rosa_samantha	Rh4AG352500 Rh4BG361800 Rh4CG376100 Rh4DG356000
rosa_wichuraiana	Rw4G030860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	264
AciI	CCGC	1 cut(s)	889
AclWI	GGATC	2 cut(s)	410, 527
AfaI	GTAC	2 cut(s)	210, 567
AgsI	TTSAA	1 cut(s)	194
AhlI	ACTAGT	1 cut(s)	166
AjnI	CCWGG	3 cut(s)	23, 102, 532
AluBI	AGCT	5 cut(s)	294, 351, 395, 435, 625
AluI	AGCT	5 cut(s)	294, 351, 395, 435, 625
Alw26I	GTCTC	3 cut(s)	25, 65, 405
AlwI	GGATC	2 cut(s)	410, 527
AoxI	GGCC	3 cut(s)	99, 336, 778
ApeKI	GCWGC	2 cut(s)	392, 461
ArsI	GACNNNNNNTTYG	2 cut(s)	64, 96
AseI	ATTAAT	1 cut(s)	300
Asp700I	GAANNNNTTC	1 cut(s)	916
AspS9I	GGNCC	2 cut(s)	100, 336
AsuC2I	CCSGG	2 cut(s)	11, 52
AsuHPI	GGTGA	1 cut(s)	847
BbvI	GCAGC	2 cut(s)	404, 448
BccI	CCATC	1 cut(s)	113
BciT130I	CCWGG	3 cut(s)	25, 104, 534
BclI	TGATCA	1 cut(s)	232
BcnI	CCSGG	2 cut(s)	11, 52
BcoDI	GTCTC	3 cut(s)	25, 65, 405
BcuI	ACTAGT	1 cut(s)	166
BfaI	CTAG	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	151
BfuAI	ACCTGC	1 cut(s)	264
BisI	GCNGC	2 cut(s)	393, 462
BlpI	GCTNAGC	3 cut(s)	260, 347, 621
BlsI	GCNGC	2 cut(s)	394, 463
Bme1390I	CCNGG	5 cut(s)	11, 25, 52, 104, 534
BmgT120I	GGNCC	2 cut(s)	100, 336
BmiI	GGNNCC	1 cut(s)	531
BmrFI	CCNGG	5 cut(s)	11, 25, 52, 104, 534
BmsI	GCATC	6 cut(s)	255, 297, 313, 527, 708, 871
BpmI	CTGGAG	1 cut(s)	647
Bpu1102I	GCTNAGC	3 cut(s)	260, 347, 621
BpuEI	CTTGAG	1 cut(s)	433
BpuMI	CCSGG	2 cut(s)	11, 52
BsaJI	CCNNGG	2 cut(s)	102, 103
Bse1I	ACTGG	1 cut(s)	589
BseBI	CCWGG	3 cut(s)	25, 104, 534
BseDI	CCNNGG	2 cut(s)	102, 103
BseGI	GGATG	5 cut(s)	6, 19, 99, 484, 542
BseMII	CTCAG	2 cut(s)	274, 612
BseNI	ACTGG	1 cut(s)	589
BseXI	GCAGC	2 cut(s)	404, 448
BshFI	GGCC	3 cut(s)	101, 338, 780
BsiSI	CCGG	2 cut(s)	10, 52
BslFI	GGGAC	1 cut(s)	833
BsmAI	GTCTC	3 cut(s)	25, 65, 405
BsmFI	GGGAC	1 cut(s)	833
BsnI	GGCC	3 cut(s)	101, 338, 780
Bsp143I	GATC	5 cut(s)	232, 415, 519, 607, 852
Bsp1720I	GCTNAGC	3 cut(s)	260, 347, 621
BspACI	CCGC	1 cut(s)	889
BspANI	GGCC	3 cut(s)	101, 338, 780
BspCNI	CTCAG	2 cut(s)	273, 613
BspLI	GGNNCC	1 cut(s)	531
BspMI	ACCTGC	1 cut(s)	264
BspPI	GGATC	2 cut(s)	410, 527
BsrI	ACTGG	1 cut(s)	589
BssECI	CCNNGG	2 cut(s)	102, 103
BssMI	GATC	5 cut(s)	232, 415, 519, 607, 852
Bst2UI	CCWGG	3 cut(s)	25, 104, 534
Bst4CI	ACNGT	1 cut(s)	734
Bst6I	CTCTTC	1 cut(s)	408
BstC8I	GCNNGC	2 cut(s)	433, 744
BstDEI	CTNAG	5 cut(s)	260, 347, 396, 621, 806
BstF5I	GGATG	5 cut(s)	6, 19, 99, 484, 542
BstKTI	GATC	5 cut(s)	235, 418, 522, 610, 855
BstMAI	GTCTC	3 cut(s)	25, 65, 405
BstMBI	GATC	5 cut(s)	232, 415, 519, 607, 852
BstNI	CCWGG	3 cut(s)	25, 104, 534
BstSCI	CCNGG	5 cut(s)	9, 23, 50, 102, 532
BstSFI	CTRYAG	1 cut(s)	151
BstV1I	GCAGC	2 cut(s)	404, 448
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	3 cut(s)	101, 338, 780
BtsCI	GGATG	5 cut(s)	6, 19, 99, 484, 542
BtsIMutI	CAGTG	1 cut(s)	739
BveI	ACCTGC	1 cut(s)	264
Cac8I	GCNNGC	2 cut(s)	433, 744
Cfr13I	GGNCC	2 cut(s)	100, 336
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	2 cut(s)	209, 566
CviAII	CATG	4 cut(s)	212, 354, 689, 921
CviQI	GTAC	2 cut(s)	209, 566
DdeI	CTNAG	5 cut(s)	260, 347, 396, 621, 806
DpnI	GATC	5 cut(s)	234, 417, 521, 609, 854
DpnII	GATC	5 cut(s)	232, 415, 519, 607, 852
DraI	TTTAAA	1 cut(s)	904
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
EcoRII	CCWGG	3 cut(s)	23, 102, 532
FaeI	CATG	4 cut(s)	215, 357, 692, 924
FaqI	GGGAC	1 cut(s)	833
FatI	CATG	4 cut(s)	211, 353, 688, 920
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	2 cut(s)	393, 462
FokI	GGATG	4 cut(s)	26, 106, 491, 549
Fsp4HI	GCNGC	2 cut(s)	393, 462
FspBI	CTAG	1 cut(s)	167
GluI	GCNGC	2 cut(s)	393, 462
GsuI	CTGGAG	1 cut(s)	647
HaeIII	GGCC	3 cut(s)	101, 338, 780
HapII	CCGG	2 cut(s)	10, 52
HgaI	GACGC	1 cut(s)	305
Hin1II	CATG	4 cut(s)	215, 357, 692, 924
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HindIII	AAGCTT	1 cut(s)	292
HinfI	GANTC	4 cut(s)	194, 226, 424, 701
HpaII	CCGG	2 cut(s)	10, 52
HphI	GGTGA	1 cut(s)	847
Hpy166II	GTNNAC	2 cut(s)	568, 697
Hpy188I	TCNGA	3 cut(s)	524, 607, 612
Hpy188III	TCNNGA	3 cut(s)	230, 320, 407
Hpy8I	GTNNAC	2 cut(s)	568, 697
HpyAV	CCTTC	3 cut(s)	650, 783, 791
HpyCH4III	ACNGT	1 cut(s)	734
HpyCH4V	TGCA	5 cut(s)	246, 326, 431, 540, 746
HpyF3I	CTNAG	5 cut(s)	260, 347, 396, 621, 806
Hsp92II	CATG	4 cut(s)	215, 357, 692, 924
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	5 cut(s)	232, 415, 519, 607, 852
Lsp1109I	GCAGC	2 cut(s)	404, 448
LweI	GCATC	6 cut(s)	255, 297, 313, 527, 708, 871
MaeI	CTAG	1 cut(s)	167
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	5 cut(s)	234, 417, 521, 609, 854
MboI	GATC	5 cut(s)	232, 415, 519, 607, 852
MboII	GAAGA	5 cut(s)	285, 293, 395, 665, 727
MfeI	CAATTG	3 cut(s)	75, 327, 747
MflI	RGATCY	1 cut(s)	415
MluCI	AATT	6 cut(s)	75, 216, 327, 491, 724, 747
MmeI	TCCRAC	1 cut(s)	524
MnlI	CCTC	4 cut(s)	84, 170, 489, 732
MroXI	GAANNNNTTC	1 cut(s)	916
MseI	TTAA	6 cut(s)	110, 300, 549, 723, 798, 903
MspI	CCGG	2 cut(s)	10, 52
MspR9I	CCNGG	5 cut(s)	11, 25, 52, 104, 534
MunI	CAATTG	3 cut(s)	75, 327, 747
MvaI	CCWGG	3 cut(s)	25, 104, 534
NciI	CCSGG	2 cut(s)	11, 52
NdeII	GATC	5 cut(s)	232, 415, 519, 607, 852
NlaIII	CATG	4 cut(s)	215, 357, 692, 924
NlaIV	GGNNCC	1 cut(s)	531
NmeAIII	GCCGAG	1 cut(s)	290
PasI	CCCWGGG	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	916
PfeI	GAWTC	4 cut(s)	194, 226, 424, 701
PfoI	TCCNGGA	1 cut(s)	9
PkrI	GCNGC	2 cut(s)	394, 463
PshBI	ATTAAT	1 cut(s)	300
Psp6I	CCWGG	3 cut(s)	23, 102, 532
PspGI	CCWGG	3 cut(s)	23, 102, 532
PspN4I	GGNNCC	1 cut(s)	531
PspPI	GGNCC	2 cut(s)	100, 336
PsuI	RGATCY	1 cut(s)	415
RsaI	GTAC	2 cut(s)	210, 567
RsaNI	GTAC	2 cut(s)	209, 566
SaqAI	TTAA	6 cut(s)	110, 300, 549, 723, 798, 903
SatI	GCNGC	2 cut(s)	393, 462
Sau3AI	GATC	5 cut(s)	232, 415, 519, 607, 852
Sau96I	GGNCC	2 cut(s)	100, 336
ScrFI	CCNGG	5 cut(s)	11, 25, 52, 104, 534
SetI	ASST	9 cut(s)	118, 258, 296, 344, 353, 397, 437, 627, 807
SfaNI	GCATC	6 cut(s)	255, 297, 313, 527, 708, 871
SfcI	CTRYAG	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	448
SmoI	CTYRAG	1 cut(s)	448
SpeI	ACTAGT	1 cut(s)	166
Sse9I	AATT	6 cut(s)	75, 216, 327, 491, 724, 747
SsiI	CCGC	1 cut(s)	889
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	5 cut(s)	9, 23, 50, 102, 532
TaaI	ACNGT	1 cut(s)	734
TaqI	TCGA	2 cut(s)	406, 790
TasI	AATT	6 cut(s)	75, 216, 327, 491, 724, 747
TatI	WGTACW	2 cut(s)	208, 565
TfiI	GAWTC	4 cut(s)	194, 226, 424, 701
Tru1I	TTAA	6 cut(s)	110, 300, 549, 723, 798, 903
Tru9I	TTAA	6 cut(s)	110, 300, 549, 723, 798, 903
TscAI	CASTG	1 cut(s)	739
TseI	GCWGC	2 cut(s)	392, 461
TspDTI	ATGAA	7 cut(s)	17, 30, 121, 286, 495, 728, 909
TspGWI	ACGGA	1 cut(s)	924
TspRI	CASTG	1 cut(s)	739
VspI	ATTAAT	1 cut(s)	300
XcmI	CCANNNNNNNNNTGG	1 cut(s)	540
XmnI	GAANNNNTTC	1 cut(s)	916
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.