Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008325.1

Orthogroup ID

OG0012518

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1363

Gene Structure 1362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008325.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

atgtctggctcctcaaaccactactgtaacctcctcaagctctgctgccaatccgcaaaccacccacaagcaaagaaaatccactcccacattatcagaaccttgccgaaccccgagaccttcctcctcaacaacctcattaccgcctacggcaaactcgggaacttaacatacgcccgccatgtgttcgatcaaatgcctcacccaactcttttctcatggaactccattctctccgtctattccaaatcccgccgcgtttccgagatgcaagacgtctttcatcggatgccgagccgtgatggcgtgtcttggtgttcgtatattgctgggtatgccgggtgtggcttggttgccgaggccgtgagggtctatggttcgatgttgagggacggagctggtaatttgacccggattacgttttccacactgcttgcgctgacttcgaatcgggggtgtgagaagctggggagacagtttcatgggcatatagtgaagtttgggtttgagtcgtatgtgtttgttggcagtcctttgattgatatgtactcgaaagccgggtttcttcttgatgcaaagcgggtttttgagttgatgccggagaggaatgtggttatgtataatacacttattactgggcttttgaggtgtggattgatcggagatgctgagtgtttgtttggtcacatgcctgaaaaagactccatttcgtggaccaccatgattaccggactcacgagaaatggtgcaggcagaaaagcactcgataagtttagagaaatgaggtcggaaggtttggggatggatcaatatacgtttggtagcgcattgactgcgtgtgggggactgttggctctgcaggagggcaagcaagttcatgcttatattgttcggactgattttatggataatatcttcgtcagtagcgctcttgttgacatgtattgtaagtgtggaagcataaaagctgcagagacagttttcaggagaatgagctgcaagaatgtagtatcgtggactgccttgcttgttggttatggccagaatgggtacagtgaagaagctgttagagttttttgtgatatgcagagaagtggggttgaaccagatgaatataccctgggaagcttaattagctcgtgtgctaacttagcaagcttagaagaaggtgcccagttccatggtcaagctctagtttcaggcctaatttctttcactacagtttcaaatgcactcgttaccttatacggtaagtgtggaagtatcgaagactcccataggctgtttgatgagatgaacatccgggatgaagtctcctggtcagcattggtttcagggtatgcccggtttggaaaagccaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

454

Amino Acids

50.15

Weight (kDa)

8.29

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68930 AT1G68930
fragaria_vesca	FvH4_4g28920
malus_domestica	MD13G1054800.v1.1 MD16G1053700.v1.1
prunus_persica	Prupe.1G297100_v2.0.a1
pyrus_communis	pycom13g04860
rosa_chinensis	RchiOBHm_Chr4g0437061
rosa_laevigata	RLG00000006472
rosa_multiflora	Rmu_co8326179.1_g000001 Rmu_sc0008325.1_g000001 Rmu_sc0028518.1_g000001
rosa_roxburghii	Rroxscaffold_5G00378140
rosa_rugosa	Rorug04G0298000
rosa_samantha	Rh4AG352500 Rh4BG361800 Rh4CG376100 Rh4DG356000
rosa_wichuraiana	Rw4G030860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	279
AccB1I	GGYRCC	1 cut(s)	1169
AccB7I	CCANNNNNTGG	1 cut(s)	711
AccII	CGCG	1 cut(s)	258
AciI	CCGC	6 cut(s)	54, 144, 178, 253, 256, 580
AclWI	GGATC	1 cut(s)	813
AcoI	YGGCCR	1 cut(s)	1039
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	2 cut(s)	548, 1052
AfeI	AGCGCT	1 cut(s)	928
AfiI	CCNNNNNNNGG	1 cut(s)	711
AflIII	ACRYGT	1 cut(s)	939
AgsI	TTSAA	2 cut(s)	1103, 1227
AjnI	CCWGG	2 cut(s)	1119, 1316
Alw26I	GTCTC	4 cut(s)	110, 466, 968, 1318
AlwI	GGATC	1 cut(s)	813
Ama87I	CYCGRG	2 cut(s)	113, 158
Aor51HI	AGCGCT	1 cut(s)	928
AoxI	GGCC	3 cut(s)	360, 1039, 1201
ApeKI	GCWGC	3 cut(s)	45, 968, 996
AspLEI	GCGC	3 cut(s)	439, 827, 929
AspS9I	GGNCC	1 cut(s)	714
AsuC2I	CCSGG	5 cut(s)	340, 412, 559, 1304, 1345
AsuHPI	GGTGA	1 cut(s)	194
AsuII	TTCGAA	1 cut(s)	446
AvaI	CYCGRG	2 cut(s)	113, 158
AvaII	GGWCC	1 cut(s)	714
BaeGI	GKGCMC	1 cut(s)	1174
BalI	TGGCCA	1 cut(s)	1041
BanI	GGYRCC	1 cut(s)	1169
BauI	CACGAG	2 cut(s)	736, 1138
BbsI	GAAGAC	1 cut(s)	1275
BbvI	GCAGC	3 cut(s)	32, 955, 983
BccI	CCATC	2 cut(s)	296, 796
BceAI	ACGGC	3 cut(s)	166, 282, 347
BciT130I	CCWGG	2 cut(s)	1121, 1318
BcnI	CCSGG	5 cut(s)	340, 412, 559, 1304, 1345
BcoDI	GTCTC	4 cut(s)	110, 466, 968, 1318
BfaI	CTAG	1 cut(s)	1193
BfmI	CTRYAG	3 cut(s)	857, 969, 1218
BfoI	RGCGCY	1 cut(s)	930
BglI	GCCNNNNNGGC	1 cut(s)	303
BisI	GCNGC	4 cut(s)	46, 256, 969, 997
BlsI	GCNGC	4 cut(s)	47, 257, 970, 998
Bme1390I	CCNGG	7 cut(s)	340, 412, 559, 1121, 1304, 1318, 1345
Bme18I	GGWCC	1 cut(s)	714
BmeT110I	CYCGRG	2 cut(s)	113, 158
BmgT120I	GGNCC	1 cut(s)	714
BmiI	GGNNCC	2 cut(s)	10, 1171
BmrFI	CCNGG	7 cut(s)	340, 412, 559, 1121, 1304, 1318, 1345
BmrI	ACTGGG	2 cut(s)	645, 1168
BmsI	GCATC	5 cut(s)	258, 279, 562, 585, 655
BmuI	ACTGGG	2 cut(s)	645, 1168
BpiI	GAAGAC	1 cut(s)	1275
Bpu14I	TTCGAA	1 cut(s)	446
BpuEI	CTTGAG	1 cut(s)	20
BpuMI	CCSGG	5 cut(s)	340, 412, 559, 1304, 1345
BsaBI	GATNNNNATC	1 cut(s)	1298
BsaHI	GRCGYC	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	4 cut(s)	357, 1119, 1120, 1180
BsaWI	WCCGGW	1 cut(s)	728
Bsc4I	CCNNNNNNNGG	1 cut(s)	711
Bse1I	ACTGG	2 cut(s)	640, 1174
Bse8I	GATNNNNATC	1 cut(s)	1298
BseBI	CCWGG	2 cut(s)	1121, 1318
BseDI	CCNNGG	4 cut(s)	357, 1119, 1120, 1180
BseGI	GGATG	4 cut(s)	294, 807, 1299, 1312
BseJI	GATNNNNATC	1 cut(s)	1298
BseLI	CCNNNNNNNGG	1 cut(s)	711
BseMII	CTCAG	1 cut(s)	660
BseNI	ACTGG	2 cut(s)	640, 1174
BseRI	GAGGAG	2 cut(s)	23, 116
BseSI	GKGCMC	1 cut(s)	1174
BseXI	GCAGC	3 cut(s)	32, 955, 983
BseYI	CCCAGC	2 cut(s)	329, 466
BsgI	GTGCAG	1 cut(s)	768
Bsh1236I	CGCG	1 cut(s)	258
BshFI	GGCC	3 cut(s)	362, 1041, 1203
BshNI	GGYRCC	1 cut(s)	1169
BsiHKCI	CYCGRG	2 cut(s)	113, 158
BsiSI	CCGG	7 cut(s)	339, 412, 558, 599, 729, 1303, 1345
BslFI	GGGAC	2 cut(s)	404, 858
BslI	CCNNNNNNNGG	1 cut(s)	711
BsmAI	GTCTC	4 cut(s)	110, 466, 968, 1318
BsmFI	GGGAC	2 cut(s)	404, 858
BsnI	GGCC	3 cut(s)	362, 1041, 1203
Bso31I	GGTCTC	1 cut(s)	110
BsoBI	CYCGRG	2 cut(s)	113, 158
Bsp119I	TTCGAA	1 cut(s)	446
Bsp1286I	GDGCHC	1 cut(s)	1174
Bsp143I	GATC	3 cut(s)	190, 657, 805
Bsp19I	CCATGG	1 cut(s)	1180
BspACI	CCGC	6 cut(s)	54, 144, 178, 253, 256, 580
BspANI	GGCC	3 cut(s)	362, 1041, 1203
BspCNI	CTCAG	1 cut(s)	661
BspFNI	CGCG	1 cut(s)	258
BspLI	GGNNCC	2 cut(s)	10, 1171
BspMAI	CTGCAG	2 cut(s)	861, 973
BspPI	GGATC	1 cut(s)	813
BspT104I	TTCGAA	1 cut(s)	446
BspT107I	GGYRCC	1 cut(s)	1169
BspTNI	GGTCTC	1 cut(s)	110
BsrI	ACTGG	2 cut(s)	640, 1174
BssECI	CCNNGG	4 cut(s)	357, 1119, 1120, 1180
BssMI	GATC	3 cut(s)	190, 657, 805
BssNI	GRCGYC	1 cut(s)	276
BssSI	CACGAG	2 cut(s)	736, 1138
BssT1I	CCWWGG	1 cut(s)	1180
Bst2BI	CACGAG	2 cut(s)	736, 1138
Bst2UI	CCWGG	2 cut(s)	1121, 1318
Bst4CI	ACNGT	7 cut(s)	26, 477, 849, 979, 1055, 1222, 1250
BstACI	GRCGYC	1 cut(s)	276
BstAPI	GCANNNNNTGC	1 cut(s)	833
BstBI	TTCGAA	1 cut(s)	446
BstC8I	GCNNGC	5 cut(s)	178, 435, 751, 869, 1156
BstDEI	CTNAG	3 cut(s)	669, 1150, 1159
BstDSI	CCRYGG	1 cut(s)	1180
BstF5I	GGATG	4 cut(s)	294, 807, 1299, 1312
BstFNI	CGCG	1 cut(s)	258
BstH2I	RGCGCY	1 cut(s)	930
BstHHI	GCGC	3 cut(s)	439, 827, 929
BstKTI	GATC	3 cut(s)	193, 660, 808
BstMAI	GTCTC	4 cut(s)	110, 466, 968, 1318
BstMBI	GATC	3 cut(s)	190, 657, 805
BstMWI	GCNNNNNNNGC	5 cut(s)	303, 335, 833, 1134, 1151
BstNI	CCWGG	2 cut(s)	1121, 1318
BstNSI	RCATGY	2 cut(s)	691, 943
BstSCI	CCNGG	7 cut(s)	338, 410, 557, 1119, 1302, 1316, 1343
BstSFI	CTRYAG	3 cut(s)	857, 969, 1218
BstSLI	GKGCMC	1 cut(s)	1174
BstUI	CGCG	1 cut(s)	258
BstV1I	GCAGC	3 cut(s)	32, 955, 983
BstV2I	GAAGAC	1 cut(s)	1275
BstXI	CCANNNNNNTGG	1 cut(s)	1181
BsuRI	GGCC	3 cut(s)	362, 1041, 1203
BtgI	CCRYGG	1 cut(s)	1180
BtsCI	GGATG	4 cut(s)	294, 807, 1299, 1312
BtsI	GCAGTG	1 cut(s)	428
BtsIMutI	CAGTG	2 cut(s)	428, 1060
Cac8I	GCNNGC	5 cut(s)	178, 435, 751, 869, 1156
CfoI	GCGC	3 cut(s)	439, 827, 929
Cfr13I	GGNCC	1 cut(s)	714
Csp6I	GTAC	2 cut(s)	547, 1051
CspCI	CAANNNNNGTGG	2 cut(s)	415, 450
CviAII	CATG	8 cut(s)	182, 219, 482, 688, 721, 878, 940, 1181
CviQI	GTAC	2 cut(s)	547, 1051
DdeI	CTNAG	3 cut(s)	669, 1150, 1159
DpnI	GATC	3 cut(s)	192, 659, 807
DpnII	GATC	3 cut(s)	190, 657, 805
EaeI	YGGCCR	1 cut(s)	1039
Eco130I	CCWWGG	1 cut(s)	1180
Eco147I	AGGCCT	1 cut(s)	1203
Eco31I	GGTCTC	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	714
Eco47III	AGCGCT	1 cut(s)	928
Eco88I	CYCGRG	2 cut(s)	113, 158
EcoRII	CCWGG	2 cut(s)	1119, 1316
EcoT14I	CCWWGG	1 cut(s)	1180
ErhI	CCWWGG	1 cut(s)	1180
FaeI	CATG	8 cut(s)	185, 222, 485, 691, 724, 881, 943, 1184
FaqI	GGGAC	2 cut(s)	404, 858
FatI	CATG	8 cut(s)	181, 218, 481, 687, 720, 877, 939, 1180
FauI	CCCGC	3 cut(s)	185, 260, 573
Fnu4HI	GCNGC	4 cut(s)	46, 256, 969, 997
FokI	GGATG	4 cut(s)	301, 814, 1286, 1319
Fsp4HI	GCNGC	4 cut(s)	46, 256, 969, 997
FspBI	CTAG	1 cut(s)	1193
GlaI	GCGC	3 cut(s)	438, 826, 928
GluI	GCNGC	4 cut(s)	46, 256, 969, 997
GsaI	CCCAGC	2 cut(s)	333, 470
HaeII	RGCGCY	1 cut(s)	930
HaeIII	GGCC	3 cut(s)	362, 1041, 1203
HapII	CCGG	7 cut(s)	339, 412, 558, 599, 729, 1303, 1345
HhaI	GCGC	3 cut(s)	439, 827, 929
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	8 cut(s)	185, 222, 485, 691, 724, 881, 943, 1184
Hin6I	GCGC	3 cut(s)	437, 825, 927
HinP1I	GCGC	3 cut(s)	437, 825, 927
HincII	GTYRAC	1 cut(s)	937
HindII	GTYRAC	1 cut(s)	937
HindIII	AAGCTT	2 cut(s)	1126, 1156
HinfI	GANTC	5 cut(s)	448, 509, 701, 732, 1271
HpaII	CCGG	7 cut(s)	339, 412, 558, 599, 729, 1303, 1345
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	3 cut(s)	714, 937, 1017
Hpy188I	TCNGA	6 cut(s)	98, 265, 288, 662, 790, 894
Hpy188III	TCNNGA	4 cut(s)	160, 569, 736, 985
Hpy8I	GTNNAC	3 cut(s)	714, 937, 1017
HpyAV	CCTTC	3 cut(s)	130, 785, 1160
HpyCH4III	ACNGT	7 cut(s)	26, 477, 849, 979, 1055, 1222, 1250
HpyCH4IV	ACGT	3 cut(s)	276, 419, 815
HpyCH4V	TGCA	8 cut(s)	271, 575, 749, 859, 971, 999, 1087, 1232
HpyF10VI	GCNNNNNNNGC	5 cut(s)	303, 335, 833, 1134, 1151
HpyF3I	CTNAG	3 cut(s)	669, 1150, 1159
HpySE526I	ACGT	3 cut(s)	276, 419, 815
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	8 cut(s)	185, 222, 485, 691, 724, 881, 943, 1184
HspAI	GCGC	3 cut(s)	437, 825, 927
Kzo9I	GATC	3 cut(s)	190, 657, 805
LmnI	GCTCC	2 cut(s)	14, 395
Lsp1109I	GCAGC	3 cut(s)	32, 955, 983
LweI	GCATC	5 cut(s)	258, 279, 562, 585, 655
MaeI	CTAG	1 cut(s)	1193
MaeII	ACGT	3 cut(s)	276, 419, 815
MaeIII	GTNAC	3 cut(s)	26, 683, 1237
MalI	GATC	3 cut(s)	192, 659, 807
MboI	GATC	3 cut(s)	190, 657, 805
MboII	GAAGA	5 cut(s)	557, 907, 1070, 1175, 1280
MhlI	GDGCHC	1 cut(s)	1174
MlsI	TGGCCA	1 cut(s)	1041
MluCI	AATT	3 cut(s)	403, 1131, 1206
MluNI	TGGCCA	1 cut(s)	1041
MlyI	GAGTC	4 cut(s)	518, 695, 726, 1265
MmeI	TCCRAC	1 cut(s)	768
Mox20I	TGGCCA	1 cut(s)	1041
MscI	TGGCCA	1 cut(s)	1041
MseI	TTAA	2 cut(s)	167, 1130
Msp20I	TGGCCA	1 cut(s)	1041
MspI	CCGG	7 cut(s)	339, 412, 558, 599, 729, 1303, 1345
MspR9I	CCNGG	7 cut(s)	340, 412, 559, 1121, 1304, 1318, 1345
MvaI	CCWGG	2 cut(s)	1121, 1318
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	5 cut(s)	303, 335, 833, 1134, 1151
NciI	CCSGG	5 cut(s)	340, 412, 559, 1304, 1345
NcoI	CCATGG	1 cut(s)	1180
NdeII	GATC	3 cut(s)	190, 657, 805
NlaIII	CATG	8 cut(s)	185, 222, 485, 691, 724, 881, 943, 1184
NlaIV	GGNNCC	2 cut(s)	10, 1171
NmeAIII	GCCGAG	2 cut(s)	318, 382
NmuCI	GTSAC	1 cut(s)	683
NspI	RCATGY	2 cut(s)	691, 943
NspV	TTCGAA	1 cut(s)	446
PasI	CCCWGGG	1 cut(s)	1120
PceI	AGGCCT	1 cut(s)	1203
PciI	ACATGT	1 cut(s)	939
PfeI	GAWTC	1 cut(s)	448
PflMI	CCANNNNNTGG	1 cut(s)	711
PfoI	TCCNGGA	1 cut(s)	1302
PkrI	GCNGC	4 cut(s)	47, 257, 970, 998
PleI	GAGTC	4 cut(s)	517, 695, 726, 1265
PpsI	GAGTC	4 cut(s)	517, 695, 726, 1265
PscI	ACATGT	1 cut(s)	939
Psp6I	CCWGG	2 cut(s)	1119, 1316
PspFI	CCCAGC	2 cut(s)	329, 466
PspGI	CCWGG	2 cut(s)	1119, 1316
PspN4I	GGNNCC	2 cut(s)	10, 1171
PspPI	GGNCC	1 cut(s)	714
PsrI	GAACNNNNNNTAC	2 cut(s)	155, 187
PstI	CTGCAG	2 cut(s)	861, 973
RsaI	GTAC	2 cut(s)	548, 1052
RsaNI	GTAC	2 cut(s)	547, 1051
SaqAI	TTAA	2 cut(s)	167, 1130
SatI	GCNGC	4 cut(s)	46, 256, 969, 997
Sau3AI	GATC	3 cut(s)	190, 657, 805
Sau96I	GGNCC	1 cut(s)	714
SchI	GAGTC	4 cut(s)	518, 695, 726, 1265
ScrFI	CCNGG	7 cut(s)	340, 412, 559, 1121, 1304, 1318, 1345
SduI	GDGCHC	1 cut(s)	1174
SfaNI	GCATC	5 cut(s)	258, 279, 562, 585, 655
SfcI	CTRYAG	3 cut(s)	857, 969, 1218
SfuI	TTCGAA	1 cut(s)	446
SinI	GGWCC	1 cut(s)	714
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	3 cut(s)	403, 1131, 1206
SseBI	AGGCCT	1 cut(s)	1203
SsiI	CCGC	6 cut(s)	54, 144, 178, 253, 256, 580
SspMI	CTAG	1 cut(s)	1193
StuI	AGGCCT	1 cut(s)	1203
StyD4I	CCNGG	7 cut(s)	338, 410, 557, 1119, 1302, 1316, 1343
StyI	CCWWGG	1 cut(s)	1180
TaaI	ACNGT	7 cut(s)	26, 477, 849, 979, 1055, 1222, 1250
TaiI	ACGT	3 cut(s)	279, 422, 818
TaqI	TCGA	6 cut(s)	189, 380, 446, 551, 765, 1266
TasI	AATT	3 cut(s)	403, 1131, 1206
TatI	WGTACW	1 cut(s)	546
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	448
Tru1I	TTAA	2 cut(s)	167, 1130
Tru9I	TTAA	2 cut(s)	167, 1130
TscAI	CASTG	2 cut(s)	435, 1060
TseFI	GTSAC	1 cut(s)	683
TseI	GCWGC	3 cut(s)	45, 968, 996
Tsp45I	GTSAC	1 cut(s)	683
TspDTI	ATGAA	6 cut(s)	272, 470, 866, 1125, 1310, 1323
TspGWI	ACGGA	2 cut(s)	226, 408
TspRI	CASTG	2 cut(s)	435, 1060
Van91I	CCANNNNNTGG	1 cut(s)	711
VpaK11BI	GGWCC	1 cut(s)	714
XceI	RCATGY	2 cut(s)	691, 943
XspI	CTAG	1 cut(s)	1193
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.