Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028518.1

Orthogroup ID

OG0012518

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 553

Gene Structure 553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028518.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 502 bp

gagggcaagcaagttcatgcttatattgttaggactgattttatggataatatcttcgtcagtagtgctcttgttgacttgtattgtaagtgtggaagcataaaagctgcagagacagttttcaggagaatgagctgcaagaatgtagtatcgtggactgccttgcttgttggttatggccagaatgggtacagtgaagaagctgttagagttttttgtgatatgcagagaagtggggttgaaccagatgaatataccctgggaagcttaattagctcgtgtgctaacttagcaagcttagaagaaggtgcccagttccatggtcaagctctagtttcaggcctgatttctttcactacagtttcaaatgcactcgttaccttatacggtaagtgtggaagtatcgaagactcccataggttgtttgatgagatgaacatccgggatgaagtctcctggtcagcattggtttcagggtatgcccggtttggaaaagccaatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

167

Amino Acids

18.28

Weight (kDa)

5.16

Isoelectric Point (pI)

33.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68930 AT1G68930
fragaria_vesca	FvH4_4g28920
malus_domestica	MD13G1054800.v1.1 MD16G1053700.v1.1
prunus_persica	Prupe.1G297100_v2.0.a1
pyrus_communis	pycom13g04860
rosa_chinensis	RchiOBHm_Chr4g0437061
rosa_laevigata	RLG00000006472
rosa_multiflora	Rmu_co8326179.1_g000001 Rmu_sc0008325.1_g000001 Rmu_sc0028518.1_g000001
rosa_roxburghii	Rroxscaffold_5G00378140
rosa_rugosa	Rorug04G0298000
rosa_samantha	Rh4AG352500 Rh4BG361800 Rh4CG376100 Rh4DG356000
rosa_wichuraiana	Rw4G030860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AcoI	YGGCCR	1 cut(s)	178
AfaI	GTAC	1 cut(s)	191
AgsI	TTSAA	2 cut(s)	242, 366
AjnI	CCWGG	2 cut(s)	258, 455
AluBI	AGCT	7 cut(s)	107, 135, 203, 267, 276, 297, 329
AluI	AGCT	7 cut(s)	107, 135, 203, 267, 276, 297, 329
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	2 cut(s)	107, 457
AoxI	GGCC	2 cut(s)	178, 340
ApeKI	GCWGC	2 cut(s)	107, 135
AsuC2I	CCSGG	2 cut(s)	443, 484
BaeGI	GKGCMC	1 cut(s)	313
BalI	TGGCCA	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	308
BauI	CACGAG	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	94, 122
BciT130I	CCWGG	2 cut(s)	260, 457
BcnI	CCSGG	2 cut(s)	443, 484
BcoDI	GTCTC	2 cut(s)	107, 457
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	2 cut(s)	108, 357
BisI	GCNGC	2 cut(s)	108, 136
BlsI	GCNGC	2 cut(s)	109, 137
Bme1390I	CCNGG	4 cut(s)	260, 443, 457, 484
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	4 cut(s)	260, 443, 457, 484
BmrI	ACTGGG	1 cut(s)	307
BmuI	ACTGGG	1 cut(s)	307
BpiI	GAAGAC	1 cut(s)	414
BpuMI	CCSGG	2 cut(s)	443, 484
BsaBI	GATNNNNATC	1 cut(s)	437
BsaJI	CCNNGG	3 cut(s)	258, 259, 319
Bse1I	ACTGG	1 cut(s)	313
Bse8I	GATNNNNATC	1 cut(s)	437
BseBI	CCWGG	2 cut(s)	260, 457
BseDI	CCNNGG	3 cut(s)	258, 259, 319
BseGI	GGATG	2 cut(s)	438, 451
BseJI	GATNNNNATC	1 cut(s)	437
BseNI	ACTGG	1 cut(s)	313
BseSI	GKGCMC	1 cut(s)	313
BseXI	GCAGC	2 cut(s)	94, 122
BshFI	GGCC	2 cut(s)	180, 342
BshNI	GGYRCC	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	70
BsiSI	CCGG	2 cut(s)	442, 484
BsmAI	GTCTC	2 cut(s)	107, 457
BsnI	GGCC	2 cut(s)	180, 342
Bsp1286I	GDGCHC	2 cut(s)	70, 313
Bsp19I	CCATGG	1 cut(s)	319
BspANI	GGCC	2 cut(s)	180, 342
BspLI	GGNNCC	1 cut(s)	310
BspMAI	CTGCAG	1 cut(s)	112
BspT107I	GGYRCC	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	3 cut(s)	258, 259, 319
BssSI	CACGAG	1 cut(s)	277
BssT1I	CCWWGG	1 cut(s)	319
Bst2BI	CACGAG	1 cut(s)	277
Bst2UI	CCWGG	2 cut(s)	260, 457
Bst4CI	ACNGT	4 cut(s)	118, 194, 361, 389
BstC8I	GCNNGC	2 cut(s)	8, 295
BstDEI	CTNAG	2 cut(s)	289, 298
BstDSI	CCRYGG	1 cut(s)	319
BstF5I	GGATG	2 cut(s)	438, 451
BstMAI	GTCTC	2 cut(s)	107, 457
BstMWI	GCNNNNNNNGC	2 cut(s)	273, 290
BstNI	CCWGG	2 cut(s)	260, 457
BstSCI	CCNGG	4 cut(s)	258, 441, 455, 482
BstSFI	CTRYAG	2 cut(s)	108, 357
BstSLI	GKGCMC	1 cut(s)	313
BstV1I	GCAGC	2 cut(s)	94, 122
BstV2I	GAAGAC	1 cut(s)	414
BstXI	CCANNNNNNTGG	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	180, 342
BtgI	CCRYGG	1 cut(s)	319
BtsCI	GGATG	2 cut(s)	438, 451
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	2 cut(s)	8, 295
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	2 cut(s)	17, 320
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	2 cut(s)	289, 298
EaeI	YGGCCR	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	319
Eco147I	AGGCCT	1 cut(s)	342
EcoRII	CCWGG	2 cut(s)	258, 455
EcoT14I	CCWWGG	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	2 cut(s)	20, 323
FatI	CATG	2 cut(s)	16, 319
Fnu4HI	GCNGC	2 cut(s)	108, 136
FokI	GGATG	2 cut(s)	425, 458
Fsp4HI	GCNGC	2 cut(s)	108, 136
FspBI	CTAG	1 cut(s)	332
GluI	GCNGC	2 cut(s)	108, 136
HaeIII	GGCC	2 cut(s)	180, 342
HapII	CCGG	2 cut(s)	442, 484
Hin1II	CATG	2 cut(s)	20, 323
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HindIII	AAGCTT	2 cut(s)	265, 295
HinfI	GANTC	1 cut(s)	410
HpaII	CCGG	2 cut(s)	442, 484
Hpy166II	GTNNAC	2 cut(s)	76, 156
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	2 cut(s)	76, 156
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	4 cut(s)	118, 194, 361, 389
HpyCH4V	TGCA	4 cut(s)	110, 138, 226, 371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	273, 290
HpyF3I	CTNAG	2 cut(s)	289, 298
Hsp92II	CATG	2 cut(s)	20, 323
Lsp1109I	GCAGC	2 cut(s)	94, 122
MaeI	CTAG	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	376
MboII	GAAGA	4 cut(s)	46, 209, 314, 419
MhlI	GDGCHC	2 cut(s)	70, 313
MlsI	TGGCCA	1 cut(s)	180
MluCI	AATT	1 cut(s)	270
MluNI	TGGCCA	1 cut(s)	180
MlyI	GAGTC	1 cut(s)	404
Mox20I	TGGCCA	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	180
MseI	TTAA	1 cut(s)	269
Msp20I	TGGCCA	1 cut(s)	180
MspI	CCGG	2 cut(s)	442, 484
MspR9I	CCNGG	4 cut(s)	260, 443, 457, 484
MvaI	CCWGG	2 cut(s)	260, 457
MwoI	GCNNNNNNNGC	2 cut(s)	273, 290
NciI	CCSGG	2 cut(s)	443, 484
NcoI	CCATGG	1 cut(s)	319
NlaIII	CATG	2 cut(s)	20, 323
NlaIV	GGNNCC	1 cut(s)	310
PasI	CCCWGGG	1 cut(s)	259
PceI	AGGCCT	1 cut(s)	342
PfoI	TCCNGGA	1 cut(s)	441
PkrI	GCNGC	2 cut(s)	109, 137
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
Psp6I	CCWGG	2 cut(s)	258, 455
PspGI	CCWGG	2 cut(s)	258, 455
PspN4I	GGNNCC	1 cut(s)	310
PstI	CTGCAG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	269
SatI	GCNGC	2 cut(s)	108, 136
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	4 cut(s)	260, 443, 457, 484
SduI	GDGCHC	2 cut(s)	70, 313
SfcI	CTRYAG	2 cut(s)	108, 357
Sse9I	AATT	1 cut(s)	270
SseBI	AGGCCT	1 cut(s)	342
SspMI	CTAG	1 cut(s)	332
StuI	AGGCCT	1 cut(s)	342
StyD4I	CCNGG	4 cut(s)	258, 441, 455, 482
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	4 cut(s)	118, 194, 361, 389
TaqI	TCGA	1 cut(s)	405
TasI	AATT	1 cut(s)	270
Tru1I	TTAA	1 cut(s)	269
Tru9I	TTAA	1 cut(s)	269
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	2 cut(s)	107, 135
TspDTI	ATGAA	4 cut(s)	5, 264, 449, 462
TspRI	CASTG	1 cut(s)	199
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.