Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012518

Physical Location & Seq

Genomic Coordinates Forward (+)

60271135 .. 60273665

Gene Structure 2531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40533

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2235 bp

ATGTCTGGCTCCTCAAACCACTACTGTAACCTCCTCAAGCTCTGCTGCCAATCCGCCGCAAACCACCCACAAGCAAAGAAAATCCACTCCCACATTATCAGAACCTTGCCGAACCCCGAGACCTTCCTCCTCAACAATCTCATTACCGCCTACGGCAAGCTCGGCAACTTATCATACGCCCGCCATGTGTTCGATCAAATGCCTCACCCAACTCTTTTCTCATGGAACTCCATTCTCTCCGTCTATTCCAAATCCCGCCGCGTTCCCGAGATGCAAGACGTCTTTCATCGGATGCCGAGCCGTGATGGCGTGTCTTGGTGTTCGTATATTGCTGGGTATGCCGGGTGTGGCTTGGTTGCCGAGGCCGTGAGGGTCTATGGTTTGATGTTGAGGGACGGAGCTGGTAATTTGACCCGGATTACGTTTTCCACACTGCTTGTGCTGACTTCGAATCGGGGGTGTGAGAAGCTGGGGAGACAGTTTCATGGGCATATAGTGAAGTTTGGCTTTGAGTCGTATGTGTTTGTTGGGAGTCCTTTGATTGATATGTACTCGAAAGCGGGGTTTCTTCTTGATGCCAAGCGGGTTTTTGAGTTGATGCCGGAGAGGAATGTGGTTATGTATAATACACTTATTACTGGGCTTTTGAGGTGTGGATTGATCGGAGATGCTGAGTGTTTGTTTGGTCACATGCCTGAAAAAGACTCCATTTCGTGGACCACAATGATTACCGGACTCACGAGAAATGGTGCAGGCAGAAAAGCACTTGATAAGTTTAGAGAGATGAGGTCCGAAGGTTTGGGGATGGATCAATATACGTTTGGTAGCGCATTGACTGCGTGTGGGGGACTGCTGGCTCTGCAGGAGGGCAAGCAAGTTCATGCTTATATTGTTAGGACTGATTTTATGGATAATATCTTCGTCAGTAGCGCTCTTGTTGACTTGTATTGTAAGTGTGGAAGCATAAAAGCTGCAGAGACAGTTTTCAGGAGAATGAGCTGCAAGAATGTAGTATCGTGGACTGCCTTGCTTGTTGGTTATGGCCAGAATGGGTACAGTGAAGAAGCTGTTAGAGTTTTTTGTGATATGCAGAGAAGTGGGGTTGAACCAGATGAATATACCCTGGGAAGCTTAATTAGCTCGTGTGCTAACTTAGCAAGCTTAGAAGAAGGTGCCCAGTTCCATGGTCAAGCTCTAGTTTCAGGCCTGATTTCTTTCACTACAGTTTCAAATGCACTCGTTACCTTATATGGTAAGTGTGGAAGTATCGAAGACTCCCATATACTGTTTGATGAGATGAACATCCGGGATGAAGTCTCCTGGTCAGCATTGGTTTCAGGGTATGCCCGGTTTGGAAAAGCCAATGAGACAATTGCTTTGTTTGAGAGGATGTTGGCCCAGGGGTTAAAACCTGATGGAGTTACTTTCATAGGGGTTCTTTCAGCCTGTAGTAGAGCAGGACTAGTGGAGAGAGGACATCAGTATTTTGAATCAATGACTAAAGTACATGGAATTACACCGATTCTTGATCACTACACTTGCATCATTGACCTGCTCAGCCGAGCAGGAAGATTAGAAGAAGCAAGAAGCTTCATTAATAAGATGCCTATGCGTCCTGATGCAATTGGTTGGGCCACCTTGCTAAGCTCATGTAGATTTCGCTCTAATATGGAGATTGGAAAATGGGCAGCTAAGTCTCTTCGAGAAATAGATCCCCAGAATCCTGCAAGCTATATCTTGCTCTCAAGCATATATGCTGCTAAAGGGAAGTGGGATGAAGTGTCTAAATTGAGGACAGGAATGAGAGATAAGGGGATCAGAAAGGAACCAGGATGCAGTTGGATTAAATATAAGAGCAGAGTACACATCTTTTCAGCAGATGACCAGTCAAGTCCATTTTCAGATCAGATATACGCTGAGCTGGAGAAACTATATTCTAAAATGATAGAAGAAGGATATGAGCCAGATGTGAGTTCAGTTCTCCATGATGTTGACGAATCACAAAAGATGAAGATGCTTAATTACCACAGTGAGAGGCTTGCAATTGCCTTTGGATTGATATTTATTCCTTCTGGCCTTCCTATTCGAGTTGTTAAAAACCTTAGAGTATGTGGGGACTGCCACAATGCCACTAAATATATTTCCAAGATCACCAAGAGAGAGATACTTGTAAGAGATGCTGTCCGCTACCACTTATTTAAAGACGGAACTTGTTCATGTGGAGATTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

744

Amino Acids

83.01

Weight (kDa)

8.53

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	235 - 281	1.5e-08	PPR repeat family
PPR	PF01535	237 - 267	7.3e-06	PPR repeat
PPR_2	PF13041	335 - 384	8.2e-14	PPR repeat family
PPR	PF01535	338 - 368	1.4e-07	PPR repeat
PPR_2	PF13041	437 - 484	1.7e-07	PPR repeat family
E_motif	PF20431	555 - 616	1.1e-22	E motif
DYW_deaminase	PF14432	652 - 744	9.2e-41	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68930 AT1G68930
fragaria_vesca	FvH4_4g28920
malus_domestica	MD13G1054800.v1.1 MD16G1053700.v1.1
prunus_persica	Prupe.1G297100_v2.0.a1
pyrus_communis	pycom13g04860
rosa_chinensis	RchiOBHm_Chr4g0437061
rosa_laevigata	RLG00000006472
rosa_multiflora	Rmu_co8326179.1_g000001 Rmu_sc0008325.1_g000001 Rmu_sc0028518.1_g000001
rosa_roxburghii	Rroxscaffold_5G00378140
rosa_rugosa	Rorug04G0298000
rosa_samantha	Rh4AG352500 Rh4BG361800 Rh4CG376100 Rh4DG356000
rosa_wichuraiana	Rw4G030860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	282
Acc36I	ACCTGC	1 cut(s)	1560
AccB1I	GGYRCC	1 cut(s)	1172
AccB7I	CCANNNNNTGG	1 cut(s)	714
AccII	CGCG	1 cut(s)	261
AciI	CCGC	9 cut(s)	54, 57, 147, 181, 256, 259, 560, 583, 2185
AclWI	GGATC	3 cut(s)	816, 1706, 1823
AcoI	YGGCCR	1 cut(s)	1042
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	4 cut(s)	551, 1055, 1506, 1863
AfeI	AGCGCT	1 cut(s)	931
AfiI	CCNNNNNNNGG	1 cut(s)	714
AgsI	TTSAA	3 cut(s)	1106, 1230, 1490
AhlI	ACTAGT	1 cut(s)	1462
AjnI	CCWGG	4 cut(s)	1122, 1319, 1398, 1828
Alw26I	GTCTC	6 cut(s)	113, 469, 971, 1321, 1361, 1701
AlwI	GGATC	3 cut(s)	816, 1706, 1823
Ama87I	CYCGRG	2 cut(s)	116, 266
Aor51HI	AGCGCT	1 cut(s)	931
AoxI	GGCC	6 cut(s)	363, 1042, 1204, 1395, 1632, 2074
ApeKI	GCWGC	5 cut(s)	45, 971, 999, 1688, 1757
ArsI	GACNNNNNNTTYG	2 cut(s)	1360, 1392
AseI	ATTAAT	1 cut(s)	1596
Asp700I	GAANNNNTTC	1 cut(s)	2212
AspLEI	GCGC	2 cut(s)	830, 932
AspS9I	GGNCC	4 cut(s)	717, 789, 1396, 1632
AsuC2I	CCSGG	4 cut(s)	343, 415, 1307, 1348
AsuHPI	GGTGA	2 cut(s)	197, 2143
AsuII	TTCGAA	1 cut(s)	449
AvaI	CYCGRG	2 cut(s)	116, 266
AvaII	GGWCC	2 cut(s)	717, 789
BaeGI	GKGCMC	1 cut(s)	1177
BalI	TGGCCA	1 cut(s)	1044
BanI	GGYRCC	1 cut(s)	1172
BauI	CACGAG	2 cut(s)	739, 1141
BbsI	GAAGAC	1 cut(s)	1278
BbvI	GCAGC	5 cut(s)	32, 958, 986, 1700, 1744
BccI	CCATC	3 cut(s)	299, 799, 1409
BceAI	ACGGC	3 cut(s)	169, 285, 350
BciT130I	CCWGG	4 cut(s)	1124, 1321, 1400, 1830
BclI	TGATCA	1 cut(s)	1528
BcnI	CCSGG	4 cut(s)	343, 415, 1307, 1348
BcoDI	GTCTC	6 cut(s)	113, 469, 971, 1321, 1361, 1701
BcuI	ACTAGT	1 cut(s)	1462
BfaI	CTAG	2 cut(s)	1196, 1463
BfmI	CTRYAG	4 cut(s)	860, 972, 1221, 1447
BfoI	RGCGCY	1 cut(s)	933
BfuAI	ACCTGC	1 cut(s)	1560
BglI	GCCNNNNNGGC	1 cut(s)	306
BisI	GCNGC	7 cut(s)	46, 57, 259, 972, 1000, 1689, 1758
BlpI	GCTNAGC	3 cut(s)	1556, 1643, 1917
BlsI	GCNGC	7 cut(s)	47, 58, 260, 973, 1001, 1690, 1759
Bme1390I	CCNGG	8 cut(s)	343, 415, 1124, 1307, 1321, 1348, 1400, 1830
Bme18I	GGWCC	2 cut(s)	717, 789
BmeT110I	CYCGRG	2 cut(s)	116, 266
BmgT120I	GGNCC	4 cut(s)	717, 789, 1396, 1632
BmiI	GGNNCC	3 cut(s)	10, 1174, 1827
BmrFI	CCNGG	8 cut(s)	343, 415, 1124, 1307, 1321, 1348, 1400, 1830
BmrI	ACTGGG	2 cut(s)	648, 1171
BmuI	ACTGGG	2 cut(s)	648, 1171
BpiI	GAAGAC	1 cut(s)	1278
BpmI	CTGGAG	1 cut(s)	1943
Bpu1102I	GCTNAGC	3 cut(s)	1556, 1643, 1917
Bpu14I	TTCGAA	1 cut(s)	449
BpuEI	CTTGAG	2 cut(s)	20, 1729
BpuMI	CCSGG	4 cut(s)	343, 415, 1307, 1348
BsaBI	GATNNNNATC	1 cut(s)	1301
BsaHI	GRCGYC	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	6 cut(s)	360, 1122, 1123, 1183, 1398, 1399
BsaWI	WCCGGW	1 cut(s)	731
Bsc4I	CCNNNNNNNGG	1 cut(s)	714
Bse1I	ACTGG	3 cut(s)	643, 1177, 1885
Bse8I	GATNNNNATC	1 cut(s)	1301
BseBI	CCWGG	4 cut(s)	1124, 1321, 1400, 1830
BseDI	CCNNGG	6 cut(s)	360, 1122, 1123, 1183, 1398, 1399
BseGI	GGATG	7 cut(s)	297, 810, 1302, 1315, 1395, 1780, 1838
BseJI	GATNNNNATC	1 cut(s)	1301
BseLI	CCNNNNNNNGG	1 cut(s)	714
BseMII	CTCAG	3 cut(s)	663, 1570, 1908
BseNI	ACTGG	3 cut(s)	643, 1177, 1885
BseRI	GAGGAG	2 cut(s)	23, 119
BseSI	GKGCMC	1 cut(s)	1177
BseXI	GCAGC	5 cut(s)	32, 958, 986, 1700, 1744
BseYI	CCCAGC	2 cut(s)	332, 469
BsgI	GTGCAG	1 cut(s)	771
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	6 cut(s)	365, 1044, 1206, 1397, 1634, 2076
BshNI	GGYRCC	1 cut(s)	1172
BsiHKCI	CYCGRG	2 cut(s)	116, 266
BsiSI	CCGG	6 cut(s)	342, 415, 602, 732, 1306, 1348
BslFI	GGGAC	3 cut(s)	407, 861, 2129
BslI	CCNNNNNNNGG	1 cut(s)	714
BsmAI	GTCTC	6 cut(s)	113, 469, 971, 1321, 1361, 1701
BsmFI	GGGAC	3 cut(s)	407, 861, 2129
BsnI	GGCC	6 cut(s)	365, 1044, 1206, 1397, 1634, 2076
Bso31I	GGTCTC	1 cut(s)	113
BsoBI	CYCGRG	2 cut(s)	116, 266
Bsp119I	TTCGAA	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	1177
Bsp143I	GATC	8 cut(s)	193, 660, 808, 1528, 1711, 1815, 1903, 2148
Bsp1720I	GCTNAGC	3 cut(s)	1556, 1643, 1917
Bsp19I	CCATGG	1 cut(s)	1183
BspACI	CCGC	9 cut(s)	54, 57, 147, 181, 256, 259, 560, 583, 2185
BspANI	GGCC	6 cut(s)	365, 1044, 1206, 1397, 1634, 2076
BspCNI	CTCAG	3 cut(s)	664, 1569, 1909
BspFNI	CGCG	1 cut(s)	261
BspLI	GGNNCC	3 cut(s)	10, 1174, 1827
BspMAI	CTGCAG	2 cut(s)	864, 976
BspMI	ACCTGC	1 cut(s)	1560
BspPI	GGATC	3 cut(s)	816, 1706, 1823
BspT104I	TTCGAA	1 cut(s)	449
BspT107I	GGYRCC	1 cut(s)	1172
BspTNI	GGTCTC	1 cut(s)	113
BsrI	ACTGG	3 cut(s)	643, 1177, 1885
BssECI	CCNNGG	6 cut(s)	360, 1122, 1123, 1183, 1398, 1399
BssMI	GATC	8 cut(s)	193, 660, 808, 1528, 1711, 1815, 1903, 2148
BssNI	GRCGYC	1 cut(s)	279
BssSI	CACGAG	2 cut(s)	739, 1141
BssT1I	CCWWGG	1 cut(s)	1183
Bst2BI	CACGAG	2 cut(s)	739, 1141
Bst2UI	CCWGG	4 cut(s)	1124, 1321, 1400, 1830
Bst4CI	ACNGT	7 cut(s)	26, 480, 982, 1058, 1225, 1287, 2030
Bst6I	CTCTTC	1 cut(s)	1704
BstACI	GRCGYC	1 cut(s)	279
BstAPI	GCANNNNNTGC	1 cut(s)	836
BstBI	TTCGAA	1 cut(s)	449
BstC8I	GCNNGC	8 cut(s)	158, 181, 754, 855, 872, 1159, 1729, 2040
BstDEI	CTNAG	8 cut(s)	672, 1153, 1162, 1556, 1643, 1692, 1917, 2102
BstDSI	CCRYGG	1 cut(s)	1183
BstF5I	GGATG	7 cut(s)	297, 810, 1302, 1315, 1395, 1780, 1838
BstFNI	CGCG	1 cut(s)	261
BstH2I	RGCGCY	1 cut(s)	933
BstHHI	GCGC	2 cut(s)	830, 932
BstKTI	GATC	8 cut(s)	196, 663, 811, 1531, 1714, 1818, 1906, 2151
BstMAI	GTCTC	6 cut(s)	113, 469, 971, 1321, 1361, 1701
BstMBI	GATC	8 cut(s)	193, 660, 808, 1528, 1711, 1815, 1903, 2148
BstMWI	GCNNNNNNNGC	7 cut(s)	162, 306, 338, 836, 859, 1137, 1154
BstNI	CCWGG	4 cut(s)	1124, 1321, 1400, 1830
BstNSI	RCATGY	1 cut(s)	694
BstSCI	CCNGG	8 cut(s)	341, 413, 1122, 1305, 1319, 1346, 1398, 1828
BstSFI	CTRYAG	4 cut(s)	860, 972, 1221, 1447
BstSLI	GKGCMC	1 cut(s)	1177
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	5 cut(s)	32, 958, 986, 1700, 1744
BstV2I	GAAGAC	1 cut(s)	1278
BstX2I	RGATCY	1 cut(s)	1711
BstXI	CCANNNNNNTGG	1 cut(s)	1184
BstYI	RGATCY	1 cut(s)	1711
BsuRI	GGCC	6 cut(s)	365, 1044, 1206, 1397, 1634, 2076
BtgI	CCRYGG	1 cut(s)	1183
BtsCI	GGATG	7 cut(s)	297, 810, 1302, 1315, 1395, 1780, 1838
BtsI	GCAGTG	1 cut(s)	431
BtsIMutI	CAGTG	3 cut(s)	431, 1063, 2035
BveI	ACCTGC	1 cut(s)	1560
Cac8I	GCNNGC	8 cut(s)	158, 181, 754, 855, 872, 1159, 1729, 2040
CfoI	GCGC	2 cut(s)	830, 932
Cfr13I	GGNCC	4 cut(s)	717, 789, 1396, 1632
CseI	GACGC	1 cut(s)	1601
Csp6I	GTAC	4 cut(s)	550, 1054, 1505, 1862
CspCI	CAANNNNNGTGG	2 cut(s)	418, 453
CviQI	GTAC	4 cut(s)	550, 1054, 1505, 1862
DdeI	CTNAG	8 cut(s)	672, 1153, 1162, 1556, 1643, 1692, 1917, 2102
DpnI	GATC	8 cut(s)	195, 662, 810, 1530, 1713, 1817, 1905, 2150
DpnII	GATC	8 cut(s)	193, 660, 808, 1528, 1711, 1815, 1903, 2148
DraI	TTTAAA	1 cut(s)	2200
EaeI	YGGCCR	1 cut(s)	1042
Eam1104I	CTCTTC	1 cut(s)	1704
EarI	CTCTTC	1 cut(s)	1704
EciI	GGCGGA	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	1183
Eco147I	AGGCCT	1 cut(s)	1206
Eco31I	GGTCTC	1 cut(s)	113
Eco47I	GGWCC	2 cut(s)	717, 789
Eco47III	AGCGCT	1 cut(s)	931
Eco88I	CYCGRG	2 cut(s)	116, 266
EcoRII	CCWGG	4 cut(s)	1122, 1319, 1398, 1828
EcoT14I	CCWWGG	1 cut(s)	1183
ErhI	CCWWGG	1 cut(s)	1183
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FaqI	GGGAC	3 cut(s)	407, 861, 2129
FauI	CCCGC	4 cut(s)	188, 263, 553, 576
FbaI	TGATCA	1 cut(s)	1528
Fnu4HI	GCNGC	7 cut(s)	46, 57, 259, 972, 1000, 1689, 1758
FokI	GGATG	7 cut(s)	304, 817, 1289, 1322, 1402, 1787, 1845
Fsp4HI	GCNGC	7 cut(s)	46, 57, 259, 972, 1000, 1689, 1758
FspBI	CTAG	2 cut(s)	1196, 1463
GlaI	GCGC	2 cut(s)	829, 931
GluI	GCNGC	7 cut(s)	46, 57, 259, 972, 1000, 1689, 1758
GsaI	CCCAGC	2 cut(s)	336, 473
GsuI	CTGGAG	1 cut(s)	1943
HaeII	RGCGCY	1 cut(s)	933
HaeIII	GGCC	6 cut(s)	365, 1044, 1206, 1397, 1634, 2076
HapII	CCGG	6 cut(s)	342, 415, 602, 732, 1306, 1348
HgaI	GACGC	1 cut(s)	1601
HhaI	GCGC	2 cut(s)	830, 932
Hin1I	GRCGYC	1 cut(s)	279
Hin6I	GCGC	2 cut(s)	828, 930
HinP1I	GCGC	2 cut(s)	828, 930
HincII	GTYRAC	2 cut(s)	940, 1993
HindII	GTYRAC	2 cut(s)	940, 1993
HindIII	AAGCTT	3 cut(s)	1129, 1159, 1588
HpaII	CCGG	6 cut(s)	342, 415, 602, 732, 1306, 1348
HphI	GGTGA	2 cut(s)	197, 2143
Hpy166II	GTNNAC	5 cut(s)	717, 940, 1020, 1864, 1993
Hpy188I	TCNGA	7 cut(s)	101, 291, 665, 793, 1820, 1903, 1908
Hpy188III	TCNNGA	7 cut(s)	266, 572, 739, 988, 1526, 1616, 1703
Hpy8I	GTNNAC	5 cut(s)	717, 940, 1020, 1864, 1993
HpyAV	CCTTC	6 cut(s)	133, 788, 1163, 1946, 2079, 2087
HpyCH4III	ACNGT	7 cut(s)	26, 480, 982, 1058, 1225, 1287, 2030
HpyCH4IV	ACGT	3 cut(s)	279, 422, 818
HpyF10VI	GCNNNNNNNGC	7 cut(s)	162, 306, 338, 836, 859, 1137, 1154
HpyF3I	CTNAG	8 cut(s)	672, 1153, 1162, 1556, 1643, 1692, 1917, 2102
HpySE526I	ACGT	3 cut(s)	279, 422, 818
Hsp92I	GRCGYC	1 cut(s)	279
HspAI	GCGC	2 cut(s)	828, 930
Ksp22I	TGATCA	1 cut(s)	1528
Kzo9I	GATC	8 cut(s)	193, 660, 808, 1528, 1711, 1815, 1903, 2148
LmnI	GCTCC	2 cut(s)	14, 398
Lsp1109I	GCAGC	5 cut(s)	32, 958, 986, 1700, 1744
MaeI	CTAG	2 cut(s)	1196, 1463
MaeII	ACGT	3 cut(s)	279, 422, 818
MaeIII	GTNAC	4 cut(s)	26, 686, 1240, 1420
MalI	GATC	8 cut(s)	195, 662, 810, 1530, 1713, 1817, 1905, 2150
MboI	GATC	8 cut(s)	193, 660, 808, 1528, 1711, 1815, 1903, 2148
MfeI	CAATTG	3 cut(s)	1371, 1623, 2043
MflI	RGATCY	1 cut(s)	1711
MhlI	GDGCHC	1 cut(s)	1177
MlsI	TGGCCA	1 cut(s)	1044
MluCI	AATT	8 cut(s)	406, 1134, 1371, 1512, 1623, 1787, 2020, 2043
MluNI	TGGCCA	1 cut(s)	1044
MlyI	GAGTC	5 cut(s)	521, 541, 698, 729, 1268
MmeI	TCCRAC	1 cut(s)	1820
Mox20I	TGGCCA	1 cut(s)	1044
MroXI	GAANNNNTTC	1 cut(s)	2212
MscI	TGGCCA	1 cut(s)	1044
MseI	TTAA	7 cut(s)	1133, 1406, 1596, 1845, 2019, 2094, 2199
Msp20I	TGGCCA	1 cut(s)	1044
MspI	CCGG	6 cut(s)	342, 415, 602, 732, 1306, 1348
MspR9I	CCNGG	8 cut(s)	343, 415, 1124, 1307, 1321, 1348, 1400, 1830
MunI	CAATTG	3 cut(s)	1371, 1623, 2043
MvaI	CCWGG	4 cut(s)	1124, 1321, 1400, 1830
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	7 cut(s)	162, 306, 338, 836, 859, 1137, 1154
NciI	CCSGG	4 cut(s)	343, 415, 1307, 1348
NcoI	CCATGG	1 cut(s)	1183
NdeII	GATC	8 cut(s)	193, 660, 808, 1528, 1711, 1815, 1903, 2148
NlaIV	GGNNCC	3 cut(s)	10, 1174, 1827
NmeAIII	GCCGAG	4 cut(s)	141, 321, 385, 1586
NmuCI	GTSAC	1 cut(s)	686
NspI	RCATGY	1 cut(s)	694
NspV	TTCGAA	1 cut(s)	449
PasI	CCCWGGG	2 cut(s)	1123, 1399
PceI	AGGCCT	1 cut(s)	1206
PdmI	GAANNNNTTC	1 cut(s)	2212
PfeI	GAWTC	5 cut(s)	451, 1490, 1522, 1720, 1997
PflMI	CCANNNNNTGG	1 cut(s)	714
PfoI	TCCNGGA	1 cut(s)	1305
PkrI	GCNGC	7 cut(s)	47, 58, 260, 973, 1001, 1690, 1759
PleI	GAGTC	5 cut(s)	520, 540, 698, 729, 1268
PpsI	GAGTC	5 cut(s)	520, 540, 698, 729, 1268
PshBI	ATTAAT	1 cut(s)	1596
Psp6I	CCWGG	4 cut(s)	1122, 1319, 1398, 1828
PspFI	CCCAGC	2 cut(s)	332, 469
PspGI	CCWGG	4 cut(s)	1122, 1319, 1398, 1828
PspN4I	GGNNCC	3 cut(s)	10, 1174, 1827
PspPI	GGNCC	4 cut(s)	717, 789, 1396, 1632
PstI	CTGCAG	2 cut(s)	864, 976
PsuI	RGATCY	1 cut(s)	1711
RsaI	GTAC	4 cut(s)	551, 1055, 1506, 1863
RsaNI	GTAC	4 cut(s)	550, 1054, 1505, 1862
SaqAI	TTAA	7 cut(s)	1133, 1406, 1596, 1845, 2019, 2094, 2199
SatI	GCNGC	7 cut(s)	46, 57, 259, 972, 1000, 1689, 1758
Sau3AI	GATC	8 cut(s)	193, 660, 808, 1528, 1711, 1815, 1903, 2148
Sau96I	GGNCC	4 cut(s)	717, 789, 1396, 1632
SchI	GAGTC	5 cut(s)	521, 541, 698, 729, 1268
ScrFI	CCNGG	8 cut(s)	343, 415, 1124, 1307, 1321, 1348, 1400, 1830
SduI	GDGCHC	1 cut(s)	1177
SfcI	CTRYAG	4 cut(s)	860, 972, 1221, 1447
SfuI	TTCGAA	1 cut(s)	449
SinI	GGWCC	2 cut(s)	717, 789
SmlI	CTYRAG	2 cut(s)	35, 1744
SmoI	CTYRAG	2 cut(s)	35, 1744
SpeI	ACTAGT	1 cut(s)	1462
Sse9I	AATT	8 cut(s)	406, 1134, 1371, 1512, 1623, 1787, 2020, 2043
SseBI	AGGCCT	1 cut(s)	1206
SsiI	CCGC	9 cut(s)	54, 57, 147, 181, 256, 259, 560, 583, 2185
SspMI	CTAG	2 cut(s)	1196, 1463
StuI	AGGCCT	1 cut(s)	1206
StyD4I	CCNGG	8 cut(s)	341, 413, 1122, 1305, 1319, 1346, 1398, 1828
StyI	CCWWGG	1 cut(s)	1183
TaaI	ACNGT	7 cut(s)	26, 480, 982, 1058, 1225, 1287, 2030
TaiI	ACGT	3 cut(s)	282, 425, 821
TaqI	TCGA	6 cut(s)	192, 449, 554, 1269, 1702, 2086
TasI	AATT	8 cut(s)	406, 1134, 1371, 1512, 1623, 1787, 2020, 2043
TatI	WGTACW	3 cut(s)	549, 1504, 1861
TauI	GCSGC	2 cut(s)	59, 261
TfiI	GAWTC	5 cut(s)	451, 1490, 1522, 1720, 1997
Tru1I	TTAA	7 cut(s)	1133, 1406, 1596, 1845, 2019, 2094, 2199
Tru9I	TTAA	7 cut(s)	1133, 1406, 1596, 1845, 2019, 2094, 2199
TscAI	CASTG	3 cut(s)	438, 1063, 2035
TseFI	GTSAC	1 cut(s)	686
TseI	GCWGC	5 cut(s)	45, 971, 999, 1688, 1757
Tsp45I	GTSAC	1 cut(s)	686
TspGWI	ACGGA	3 cut(s)	229, 411, 2220
TspRI	CASTG	3 cut(s)	438, 1063, 2035
Van91I	CCANNNNNTGG	1 cut(s)	714
VpaK11BI	GGWCC	2 cut(s)	717, 789
VspI	ATTAAT	1 cut(s)	1596
XceI	RCATGY	1 cut(s)	694
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1836
XmnI	GAANNNNTTC	1 cut(s)	2212
XspI	CTAG	2 cut(s)	1196, 1463
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.