Rh4DG356000

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
57724905 .. 57727139
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG356000.1

Sequence Viewer

Length: 1539 bp
ATGTCTGGCTCCTCAAACCACTACTGTAACCTCCTCAAGCTCTGCTGCCAATCCGCCGCAAACCACCCACAAGCAAAGAAAATCCACTCCCACATTATCAGAACCTTGCCGAACCCCGAGACCTTCCTCCTCAACAATCTCATTACCGCCTACGGCAAACTCGGCAACTTAACATACGCCCGCCATGTGTTCGATCAAATGCCTCACCCAACTCTTTTCTCATGGAACTCCATTCTCTCCGTCTATTCCAAATCCCGCCGCGTTCCCGAGATGCAAGACGTCTTTCATCGGATGCCGAGCCGTGATGGCGTGTCTTGGTGTTCGTATATTGCTGGGTATGCCGGGTGTGGCTTGGTTGCCGAGGCCGTGAGGGTCTATGGTTTGATGTTGAGGGACGGAGCTGGTAATTTGACCCGGATTACGTTTTCCACACTGCTTGTGCTGACTTCGAATCGGGGGTGTGAGAAGCTGGGGAGACAGTTTCATGGGCATATAGTGAAGTTTGGCTTTGAGTCGTATGTGTTTGTTGGGAGTCCTTTGATTGATATGTACTCGAAAGCGGGGTTTCTTCTTGATGCCAAGCGGGTTTTTGAGTTGATGCCCGAGAGGAATGTGGTTATGTATAATACACTTATTACTGGGCTTTTGAGGTGTGGATTGATCGGAGATGCTGAGTGTTTGTTTGGTCACATGCCTGAAAAAGACTCCATTTCGTGGACCACAATGATTACCGGACTCACGAGAAATGGTGCAGGCAGAAAAGCACTTGATAAGTTCAGAGAGATGAGGTCCGAAGGTTTGGGGATGGATCAATATACGTTTGGTAGCGCATTGACTGCGTGTGGGGGACTGCTGGCTCTGCAGGAGGGCAAGCAAGTTCATGCTTATATTGTTAGGACTGATTTTATGGATAATATCTTCGTCAGTAGTGCTCTTGTTGACTTGTATTGTAAGTGTGGAAGCATAAAAGCTGCAGAGACAGTTTTCAGGAGAATGAGCTACAAGAATGTAGTATCGTGGACTGCCTTGCTTGTTGGTTATGGCCAGAATGGGTACAGTGAAGAAGCTGTTAGAGTTTTTTGTGATATGCAGAGAAGTGGGGTTGAACCAGATGAATATACCCTGGGAAGCTTAATTAGCTCGTGTGCTAACTTAGCAAGCTTAGAAGAAGGTGCCCAGTTCCATGGTCAAGCTCTAGTTTCAGGCCTGATTTCTTTCACTACAGTTTCAAATGCACTCGTTACCTTATATGAAGAAGGATATGAGCCAGATGTGAGTTCAGTTCTCCATGATGTTGACGAATCACAAAAGATGAAGATGCTTAATTACCACAGTGAGAGGCTTGCAATTGCCTTTGGATTGATATTTATTCCTTCTGGCCTTCCTATTCGAGTTGTTAAAAACCTTAGAGTATGTGGGGACTGCCACAATGCCACTAAATATATTTCCAAGATCACCAAGAGAGAGATACTTGTAAGAGATGCTGTCCGCTACCACTTATTTAAAGACGGAACTTGTTCATGTGGAGATTTTTGGTGA

Protein Analysis

512

Amino Acids

56.96

Weight (kDa)

8.35

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 235 - 281 9.1e-09 PPR repeat family
PPR PF01535 237 - 267 4.6e-06 PPR repeat
PPR_2 PF13041 335 - 384 5e-14 PPR repeat family
PPR PF01535 338 - 368 9.1e-08 PPR repeat
DYW_deaminase PF14432 420 - 512 5.2e-41 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012518)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 282
AccB1I GGYRCC 1 cut(s) 1172
AccB7I CCANNNNNTGG 1 cut(s) 714
AccII CGCG 1 cut(s) 261
AciI CCGC 9 cut(s) 54, 57, 147, 181, 256, 259, 560, 583, 1489
AclWI GGATC 1 cut(s) 816
AcoI YGGCCR 1 cut(s) 1042
AcyI GRCGYC 1 cut(s) 279
AfaI GTAC 2 cut(s) 551, 1055
AfiI CCNNNNNNNGG 1 cut(s) 714
AgsI TTSAA 2 cut(s) 1106, 1230
AjnI CCWGG 1 cut(s) 1122
Alw21I GWGCWC 1 cut(s) 934
Alw26I GTCTC 3 cut(s) 113, 469, 971
AlwI GGATC 1 cut(s) 816
Ama87I CYCGRG 3 cut(s) 116, 266, 602
AoxI GGCC 4 cut(s) 363, 1042, 1204, 1378
ApeKI GCWGC 2 cut(s) 45, 971
Asp700I GAANNNNTTC 1 cut(s) 1516
AspLEI GCGC 1 cut(s) 830
AspS9I GGNCC 2 cut(s) 717, 789
AsuC2I CCSGG 2 cut(s) 343, 415
AsuHPI GGTGA 2 cut(s) 197, 1447
AsuII TTCGAA 1 cut(s) 449
AvaI CYCGRG 3 cut(s) 116, 266, 602
AvaII GGWCC 2 cut(s) 717, 789
BaeGI GKGCMC 1 cut(s) 1177
BalI TGGCCA 1 cut(s) 1044
BanI GGYRCC 1 cut(s) 1172
BauI CACGAG 2 cut(s) 739, 1141
Bbv12I GWGCWC 1 cut(s) 934
BbvI GCAGC 2 cut(s) 32, 958
BccI CCATC 2 cut(s) 299, 799
BceAI ACGGC 3 cut(s) 169, 285, 350
BciT130I CCWGG 1 cut(s) 1124
BcnI CCSGG 2 cut(s) 343, 415
BcoDI GTCTC 3 cut(s) 113, 469, 971
BfaI CTAG 1 cut(s) 1196
BfmI CTRYAG 3 cut(s) 860, 972, 1221
BglI GCCNNNNNGGC 1 cut(s) 306
BisI GCNGC 4 cut(s) 46, 57, 259, 972
BlsI GCNGC 4 cut(s) 47, 58, 260, 973
Bme1390I CCNGG 3 cut(s) 343, 415, 1124
Bme18I GGWCC 2 cut(s) 717, 789
BmeT110I CYCGRG 3 cut(s) 116, 266, 602
BmgT120I GGNCC 2 cut(s) 717, 789
BmiI GGNNCC 2 cut(s) 10, 1174
BmrFI CCNGG 3 cut(s) 343, 415, 1124
BmrI ACTGGG 2 cut(s) 648, 1171
BmsI GCATC 7 cut(s) 261, 282, 565, 588, 658, 1308, 1471
BmuI ACTGGG 2 cut(s) 648, 1171
Bpu14I TTCGAA 1 cut(s) 449
BpuEI CTTGAG 1 cut(s) 20
BpuMI CCSGG 2 cut(s) 343, 415
BsaHI GRCGYC 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 4 cut(s) 360, 1122, 1123, 1183
BsaWI WCCGGW 1 cut(s) 731
Bsc4I CCNNNNNNNGG 1 cut(s) 714
Bse1I ACTGG 2 cut(s) 643, 1177
BseBI CCWGG 1 cut(s) 1124
BseDI CCNNGG 4 cut(s) 360, 1122, 1123, 1183
BseGI GGATG 2 cut(s) 297, 810
BseLI CCNNNNNNNGG 1 cut(s) 714
BseMII CTCAG 1 cut(s) 663
BseNI ACTGG 2 cut(s) 643, 1177
BseRI GAGGAG 2 cut(s) 23, 119
BseSI GKGCMC 1 cut(s) 1177
BseXI GCAGC 2 cut(s) 32, 958
BseYI CCCAGC 2 cut(s) 332, 469
BsgI GTGCAG 1 cut(s) 771
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 4 cut(s) 365, 1044, 1206, 1380
BshNI GGYRCC 1 cut(s) 1172
BsiHKAI GWGCWC 1 cut(s) 934
BsiHKCI CYCGRG 3 cut(s) 116, 266, 602
BsiSI CCGG 3 cut(s) 342, 415, 732
BslFI GGGAC 3 cut(s) 407, 861, 1433
BslI CCNNNNNNNGG 1 cut(s) 714
BsmAI GTCTC 3 cut(s) 113, 469, 971
BsmFI GGGAC 3 cut(s) 407, 861, 1433
BsnI GGCC 4 cut(s) 365, 1044, 1206, 1380
Bso31I GGTCTC 1 cut(s) 113
BsoBI CYCGRG 3 cut(s) 116, 266, 602
Bsp119I TTCGAA 1 cut(s) 449
Bsp1286I GDGCHC 2 cut(s) 934, 1177
Bsp143I GATC 4 cut(s) 193, 660, 808, 1452
Bsp19I CCATGG 1 cut(s) 1183
BspACI CCGC 9 cut(s) 54, 57, 147, 181, 256, 259, 560, 583, 1489
BspANI GGCC 4 cut(s) 365, 1044, 1206, 1380
BspCNI CTCAG 1 cut(s) 664
BspFNI CGCG 1 cut(s) 261
BspLI GGNNCC 2 cut(s) 10, 1174
BspMAI CTGCAG 2 cut(s) 864, 976
BspPI GGATC 1 cut(s) 816
BspT104I TTCGAA 1 cut(s) 449
BspT107I GGYRCC 1 cut(s) 1172
BspTNI GGTCTC 1 cut(s) 113
BsrI ACTGG 2 cut(s) 643, 1177
BssECI CCNNGG 4 cut(s) 360, 1122, 1123, 1183
BssMI GATC 4 cut(s) 193, 660, 808, 1452
BssNI GRCGYC 1 cut(s) 279
BssSI CACGAG 2 cut(s) 739, 1141
BssT1I CCWWGG 1 cut(s) 1183
Bst2BI CACGAG 2 cut(s) 739, 1141
Bst2UI CCWGG 1 cut(s) 1124
Bst4CI ACNGT 6 cut(s) 26, 480, 982, 1058, 1225, 1334
BstACI GRCGYC 1 cut(s) 279
BstAPI GCANNNNNTGC 1 cut(s) 836
BstBI TTCGAA 1 cut(s) 449
BstC8I GCNNGC 6 cut(s) 181, 754, 855, 872, 1159, 1344
BstDEI CTNAG 4 cut(s) 672, 1153, 1162, 1406
BstDSI CCRYGG 1 cut(s) 1183
BstF5I GGATG 2 cut(s) 297, 810
BstFNI CGCG 1 cut(s) 261
BstHHI GCGC 1 cut(s) 830
BstKTI GATC 4 cut(s) 196, 663, 811, 1455
BstMAI GTCTC 3 cut(s) 113, 469, 971
BstMBI GATC 4 cut(s) 193, 660, 808, 1452
BstMWI GCNNNNNNNGC 7 cut(s) 162, 306, 338, 836, 859, 1137, 1154
BstNI CCWGG 1 cut(s) 1124
BstNSI RCATGY 1 cut(s) 694
BstSCI CCNGG 3 cut(s) 341, 413, 1122
BstSFI CTRYAG 3 cut(s) 860, 972, 1221
BstSLI GKGCMC 1 cut(s) 1177
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 2 cut(s) 32, 958
BstXI CCANNNNNNTGG 1 cut(s) 1184
BsuRI GGCC 4 cut(s) 365, 1044, 1206, 1380
BtgI CCRYGG 1 cut(s) 1183
BtsCI GGATG 2 cut(s) 297, 810
BtsI GCAGTG 1 cut(s) 431
BtsIMutI CAGTG 3 cut(s) 431, 1063, 1339
Cac8I GCNNGC 6 cut(s) 181, 754, 855, 872, 1159, 1344
CfoI GCGC 1 cut(s) 830
Cfr13I GGNCC 2 cut(s) 717, 789
Csp6I GTAC 2 cut(s) 550, 1054
CspCI CAANNNNNGTGG 2 cut(s) 418, 453
CviAII CATG 8 cut(s) 185, 222, 485, 691, 881, 1184, 1289, 1521
CviQI GTAC 2 cut(s) 550, 1054
DdeI CTNAG 4 cut(s) 672, 1153, 1162, 1406
DpnI GATC 4 cut(s) 195, 662, 810, 1454
DpnII GATC 4 cut(s) 193, 660, 808, 1452
DraI TTTAAA 1 cut(s) 1504
EaeI YGGCCR 1 cut(s) 1042
EciI GGCGGA 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 1183
Eco147I AGGCCT 1 cut(s) 1206
Eco31I GGTCTC 1 cut(s) 113
Eco47I GGWCC 2 cut(s) 717, 789
Eco88I CYCGRG 3 cut(s) 116, 266, 602
EcoRII CCWGG 1 cut(s) 1122
EcoT14I CCWWGG 1 cut(s) 1183
ErhI CCWWGG 1 cut(s) 1183
FaeI CATG 8 cut(s) 188, 225, 488, 694, 884, 1187, 1292, 1524
FalI AAGNNNNNCTT 2 cut(s) 491, 523
FaqI GGGAC 3 cut(s) 407, 861, 1433
FatI CATG 8 cut(s) 184, 221, 484, 690, 880, 1183, 1288, 1520
FauI CCCGC 4 cut(s) 188, 263, 553, 576
Fnu4HI GCNGC 4 cut(s) 46, 57, 259, 972
FokI GGATG 2 cut(s) 304, 817
Fsp4HI GCNGC 4 cut(s) 46, 57, 259, 972
FspBI CTAG 1 cut(s) 1196
GlaI GCGC 1 cut(s) 829
GluI GCNGC 4 cut(s) 46, 57, 259, 972
GsaI CCCAGC 2 cut(s) 336, 473
HaeIII GGCC 4 cut(s) 365, 1044, 1206, 1380
HapII CCGG 3 cut(s) 342, 415, 732
HhaI GCGC 1 cut(s) 830
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 8 cut(s) 188, 225, 488, 694, 884, 1187, 1292, 1524
Hin6I GCGC 1 cut(s) 828
HinP1I GCGC 1 cut(s) 828
HincII GTYRAC 2 cut(s) 940, 1297
HindII GTYRAC 2 cut(s) 940, 1297
HindIII AAGCTT 2 cut(s) 1129, 1159
HinfI GANTC 6 cut(s) 451, 512, 532, 704, 735, 1301
HpaII CCGG 3 cut(s) 342, 415, 732
HphI GGTGA 2 cut(s) 197, 1447
Hpy166II GTNNAC 4 cut(s) 717, 940, 1020, 1297
Hpy188I TCNGA 5 cut(s) 101, 291, 665, 779, 793
Hpy188III TCNNGA 4 cut(s) 266, 572, 739, 988
Hpy8I GTNNAC 4 cut(s) 717, 940, 1020, 1297
HpyAV CCTTC 6 cut(s) 133, 788, 1163, 1250, 1383, 1391
HpyCH4III ACNGT 6 cut(s) 26, 480, 982, 1058, 1225, 1334
HpyCH4IV ACGT 3 cut(s) 279, 422, 818
HpyCH4V TGCA 7 cut(s) 274, 752, 862, 974, 1090, 1235, 1346
HpyF10VI GCNNNNNNNGC 7 cut(s) 162, 306, 338, 836, 859, 1137, 1154
HpyF3I CTNAG 4 cut(s) 672, 1153, 1162, 1406
HpySE526I ACGT 3 cut(s) 279, 422, 818
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 8 cut(s) 188, 225, 488, 694, 884, 1187, 1292, 1524
HspAI GCGC 1 cut(s) 828
Kzo9I GATC 4 cut(s) 193, 660, 808, 1452
LmnI GCTCC 2 cut(s) 14, 398
Lsp1109I GCAGC 2 cut(s) 32, 958
LweI GCATC 7 cut(s) 261, 282, 565, 588, 658, 1308, 1471
MaeI CTAG 1 cut(s) 1196
MaeII ACGT 3 cut(s) 279, 422, 818
MaeIII GTNAC 3 cut(s) 26, 686, 1240
MalI GATC 4 cut(s) 195, 662, 810, 1454
MboI GATC 4 cut(s) 193, 660, 808, 1452
MboII GAAGA 6 cut(s) 560, 910, 1073, 1178, 1265, 1327
MfeI CAATTG 1 cut(s) 1347
MhlI GDGCHC 2 cut(s) 934, 1177
MlsI TGGCCA 1 cut(s) 1044
MluCI AATT 4 cut(s) 406, 1134, 1324, 1347
MluNI TGGCCA 1 cut(s) 1044
MlyI GAGTC 4 cut(s) 521, 541, 698, 729
Mox20I TGGCCA 1 cut(s) 1044
MroXI GAANNNNTTC 1 cut(s) 1516
MscI TGGCCA 1 cut(s) 1044
MseI TTAA 5 cut(s) 170, 1133, 1323, 1398, 1503
Msp20I TGGCCA 1 cut(s) 1044
MspI CCGG 3 cut(s) 342, 415, 732
MspR9I CCNGG 3 cut(s) 343, 415, 1124
MunI CAATTG 1 cut(s) 1347
MvaI CCWGG 1 cut(s) 1124
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 7 cut(s) 162, 306, 338, 836, 859, 1137, 1154
NciI CCSGG 2 cut(s) 343, 415
NcoI CCATGG 1 cut(s) 1183
NdeII GATC 4 cut(s) 193, 660, 808, 1452
NlaIII CATG 8 cut(s) 188, 225, 488, 694, 884, 1187, 1292, 1524
NlaIV GGNNCC 2 cut(s) 10, 1174
NmeAIII GCCGAG 3 cut(s) 141, 321, 385
NmuCI GTSAC 1 cut(s) 686
NspI RCATGY 1 cut(s) 694
NspV TTCGAA 1 cut(s) 449
PasI CCCWGGG 1 cut(s) 1123
PceI AGGCCT 1 cut(s) 1206
PdmI GAANNNNTTC 1 cut(s) 1516
PfeI GAWTC 2 cut(s) 451, 1301
PflMI CCANNNNNTGG 1 cut(s) 714
PkrI GCNGC 4 cut(s) 47, 58, 260, 973
PleI GAGTC 4 cut(s) 520, 540, 698, 729
PpsI GAGTC 4 cut(s) 520, 540, 698, 729
Psp6I CCWGG 1 cut(s) 1122
PspFI CCCAGC 2 cut(s) 332, 469
PspGI CCWGG 1 cut(s) 1122
PspN4I GGNNCC 2 cut(s) 10, 1174
PspPI GGNCC 2 cut(s) 717, 789
PstI CTGCAG 2 cut(s) 864, 976
RsaI GTAC 2 cut(s) 551, 1055
RsaNI GTAC 2 cut(s) 550, 1054
SaqAI TTAA 5 cut(s) 170, 1133, 1323, 1398, 1503
SatI GCNGC 4 cut(s) 46, 57, 259, 972
Sau3AI GATC 4 cut(s) 193, 660, 808, 1452
Sau96I GGNCC 2 cut(s) 717, 789
SchI GAGTC 4 cut(s) 521, 541, 698, 729
ScrFI CCNGG 3 cut(s) 343, 415, 1124
SduI GDGCHC 2 cut(s) 934, 1177
SfaNI GCATC 7 cut(s) 261, 282, 565, 588, 658, 1308, 1471
SfcI CTRYAG 3 cut(s) 860, 972, 1221
SfuI TTCGAA 1 cut(s) 449
SinI GGWCC 2 cut(s) 717, 789
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 4 cut(s) 406, 1134, 1324, 1347
SseBI AGGCCT 1 cut(s) 1206
SsiI CCGC 9 cut(s) 54, 57, 147, 181, 256, 259, 560, 583, 1489
SspMI CTAG 1 cut(s) 1196
StuI AGGCCT 1 cut(s) 1206
StyD4I CCNGG 3 cut(s) 341, 413, 1122
StyI CCWWGG 1 cut(s) 1183
TaaI ACNGT 6 cut(s) 26, 480, 982, 1058, 1225, 1334
TaiI ACGT 3 cut(s) 282, 425, 821
TaqI TCGA 4 cut(s) 192, 449, 554, 1390
TasI AATT 4 cut(s) 406, 1134, 1324, 1347
TatI WGTACW 1 cut(s) 549
TauI GCSGC 2 cut(s) 59, 261
TfiI GAWTC 2 cut(s) 451, 1301
Tru1I TTAA 5 cut(s) 170, 1133, 1323, 1398, 1503
Tru9I TTAA 5 cut(s) 170, 1133, 1323, 1398, 1503
TscAI CASTG 3 cut(s) 438, 1063, 1339
TseFI GTSAC 1 cut(s) 686
TseI GCWGC 2 cut(s) 45, 971
Tsp45I GTSAC 1 cut(s) 686
TspDTI ATGAA 7 cut(s) 275, 473, 869, 1128, 1266, 1328, 1509
TspGWI ACGGA 3 cut(s) 229, 411, 1524
TspRI CASTG 3 cut(s) 438, 1063, 1339
Van91I CCANNNNNTGG 1 cut(s) 714
VpaK11BI GGWCC 2 cut(s) 717, 789
XceI RCATGY 1 cut(s) 694
XmnI GAANNNNTTC 1 cut(s) 1516
XspI CTAG 1 cut(s) 1196
ZraI GACGTC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.