Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012188

Physical Location & Seq

Genomic Coordinates Forward (+)

30211625 .. 30213822

Gene Structure 2198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G310700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGGATTGAAGAAAGCGACGACGTTGTTGGAGGAAGTGATAGAGAAAGCAGGAGGTTGTGCTGTGATGGACGGAGGGTTCGCTACCCAGCTGGAGAGACACGGCGCTGCCATCAACGACCCTCTCTGGAGCGCCGTCTGCCTCATCAAAGACCCCGACCTCATCAAGCGGGTCCACTTGGAATACTTGGAAGCCGGCGCAGATATTCTGGTCACTTCATCTTACCAGGCCACAATTCCTGGATTTTTGTCCAGAGGACTGTCCATTGAAGAAGGGGAGTTGTTGCTGAAGAAAAGTGTGAAATTGGCTGTTGAAGCTCGCAACAGTTTCTGGGATGCTCTCAAAGTGACACCTGAGCATCAGTATAACAGGGCTTTGGTTGCTGCCTCTATTGGAAGCTATGGAGCCTATCTTGCTGATGGCTCAGAATATAGTGGATGCTATGGACCCCAAGTGAATGTTGATAAGCTCAAGGATTTCCACCGACGCAGATTGCAAGTTCTTGTGGAAGCAGGTCCTGATTTACTTGCATTTGAGACCATCCCTAATAAGCTTGAAGCTCAGGCCTGCGTTGAGTTGCTTGAAGAAGAAAACATTCAAATACCATCTTGGATATGTTTCACCTCTGTAGATGGTGAAAACGCCCCATCCCGAGAGAGCTTCAAGGAATGCCTTGACATAATAAATAAGAGTAACAAAATACATGCAGTGGGAATAAATTGCGCACCTCCTCATTTGATTCAGTCTCTCATCTGCAAATTTAAAGAGTTAACCAATAAAGCAATTGTTGTGTACCCTAATAGTGGTGAGATATGGGATGGCAAAGCTAAAAGATGGCTGCCTGCCAAGAGTTTTGATGACAACAATTTTGAATGCTTTGCAACAAGCTGGCGTGACGCAGGAGCTAAACTCATCGGAGGCTGTTGTCGGACAACACCTTCCACCGTTCAAGTCATTTCTAAGGCTTTAAAAGGAAATTCGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008172 GO:0008652 GO:0008757 GO:0008898 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009987 GO:0016053 GO:0016740 GO:0016741 GO:0019752 GO:0032259 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

S-methyl_trans

Protein Analysis

329

Amino Acids

35.91

Weight (kDa)

5.78

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25900 AT3G25900 AT3G25900
fragaria_vesca	FvH4_4g27410 FvH4_4g27410
malus_domestica	MD16G1043200.v1.1
prunus_persica	Prupe.1G310700_v2.0.a1
pyrus_communis	pycom16g03730
rosa_chinensis	RchiOBHm_Chr4g0435231
rosa_laevigata	RLG00000006608
rosa_multiflora	Rmu_ssc0000339.1_g000027
rosa_roxburghii	Rroxscaffold_5G00376440
rosa_rugosa	Rorug04G0283300 Rorug04G0283400
rosa_samantha	Rh4AG338900 Rh4BG347100 Rh4CG361700 Rh4DG341500
rosa_wichuraiana	Rw4G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	724
Acc36I	ACCTGC	1 cut(s)	503
AciI	CCGC	1 cut(s)	169
AcsI	RAATTY	2 cut(s)	758, 976
AcuI	CTGAAG	1 cut(s)	308
AfaI	GTAC	1 cut(s)	794
AfiI	CCNNNNNNNGG	1 cut(s)	803
AgsI	TTSAA	9 cut(s)	10, 269, 314, 557, 584, 599, 664, 872, 950
AjnI	CCWGG	2 cut(s)	225, 238
AloI	GAACNNNNNNTCC	2 cut(s)	62, 94
Alw26I	GTCTC	3 cut(s)	91, 530, 750
AlwNI	CAGNNNCTG	2 cut(s)	330, 518
Ama87I	CYCGRG	1 cut(s)	651
AoxI	GGCC	2 cut(s)	228, 564
ApeKI	GCWGC	3 cut(s)	107, 383, 838
ApoI	RAATTY	2 cut(s)	758, 976
ArsI	GACNNNNNNTTYG	4 cut(s)	62, 94, 851, 883
Asp700I	GAANNNNTTC	1 cut(s)	594
AspLEI	GCGC	4 cut(s)	107, 134, 200, 725
AspS9I	GGNCC	3 cut(s)	172, 446, 515
AsuHPI	GGTGA	3 cut(s)	613, 647, 818
AvaI	CYCGRG	1 cut(s)	651
AvaII	GGWCC	3 cut(s)	172, 446, 515
BbvI	GCAGC	3 cut(s)	94, 370, 825
BccI	CCATC	9 cut(s)	61, 119, 413, 548, 613, 626, 655, 812, 828
BceAI	ACGGC	2 cut(s)	118, 119
BciT130I	CCWGG	2 cut(s)	227, 240
BcoDI	GTCTC	3 cut(s)	91, 530, 750
BfmI	CTRYAG	1 cut(s)	627
BfoI	RGCGCY	2 cut(s)	108, 135
BfuAI	ACCTGC	1 cut(s)	503
BisI	GCNGC	3 cut(s)	108, 384, 839
BlsI	GCNGC	3 cut(s)	109, 385, 840
Bme1390I	CCNGG	2 cut(s)	227, 240
Bme18I	GGWCC	3 cut(s)	172, 446, 515
BmeT110I	CYCGRG	1 cut(s)	651
BmgT120I	GGNCC	3 cut(s)	172, 446, 515
BmiI	GGNNCC	3 cut(s)	173, 406, 448
BmrFI	CCNGG	2 cut(s)	227, 240
BmsI	GCATC	3 cut(s)	325, 367, 428
BplI	GAGNNNNNCTC	2 cut(s)	894, 926
BpmI	CTGGAG	2 cut(s)	113, 148
Bpu10I	CCTNAGC	2 cut(s)	354, 561
BpuEI	CTTGAG	1 cut(s)	455
BsaI	GGTCTC	1 cut(s)	530
Bsc4I	CCNNNNNNNGG	1 cut(s)	803
Bse118I	RCCGGY	1 cut(s)	194
BseBI	CCWGG	2 cut(s)	227, 240
BseGI	GGATG	5 cut(s)	340, 443, 540, 647, 823
BseLI	CCNNNNNNNGG	1 cut(s)	803
BseMII	CTCAG	3 cut(s)	345, 438, 575
BseRI	GAGGAG	1 cut(s)	720
BseXI	GCAGC	3 cut(s)	94, 370, 825
BseYI	CCCAGC	1 cut(s)	87
BshFI	GGCC	2 cut(s)	230, 566
BsiHKCI	CYCGRG	1 cut(s)	651
BsiSI	CCGG	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	803
BsmAI	GTCTC	3 cut(s)	91, 530, 750
BsmI	GAATGC	2 cut(s)	674, 878
BsnI	GGCC	2 cut(s)	230, 566
Bso31I	GGTCTC	1 cut(s)	530
BsoBI	CYCGRG	1 cut(s)	651
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	2 cut(s)	230, 566
BspCNI	CTCAG	3 cut(s)	346, 437, 574
BspLI	GGNNCC	3 cut(s)	173, 406, 448
BspMI	ACCTGC	1 cut(s)	503
BspTNI	GGTCTC	1 cut(s)	530
BsrFI	RCCGGY	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	194
Bst2UI	CCWGG	2 cut(s)	227, 240
Bst4CI	ACNGT	3 cut(s)	261, 326, 946
BstC8I	GCNNGC	5 cut(s)	196, 319, 568, 843, 890
BstDEI	CTNAG	4 cut(s)	354, 424, 561, 960
BstF5I	GGATG	5 cut(s)	340, 443, 540, 647, 823
BstH2I	RGCGCY	2 cut(s)	108, 135
BstHHI	GCGC	4 cut(s)	107, 134, 200, 725
BstMAI	GTCTC	3 cut(s)	91, 530, 750
BstMWI	GCNNNNNNNGC	4 cut(s)	138, 314, 380, 413
BstNI	CCWGG	2 cut(s)	227, 240
BstNSI	RCATGY	1 cut(s)	707
BstSCI	CCNGG	2 cut(s)	225, 238
BstSFI	CTRYAG	1 cut(s)	627
BstV1I	GCAGC	3 cut(s)	94, 370, 825
BsuRI	GGCC	2 cut(s)	230, 566
BtsCI	GGATG	5 cut(s)	340, 443, 540, 647, 823
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	1 cut(s)	714
BveI	ACCTGC	1 cut(s)	503
Cac8I	GCNNGC	5 cut(s)	196, 319, 568, 843, 890
CaiI	CAGNNNCTG	2 cut(s)	330, 518
CfoI	GCGC	4 cut(s)	107, 134, 200, 725
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	3 cut(s)	172, 446, 515
CseI	GACGC	2 cut(s)	495, 905
Csp6I	GTAC	1 cut(s)	793
CviAII	CATG	1 cut(s)	704
CviQI	GTAC	1 cut(s)	793
DdeI	CTNAG	4 cut(s)	354, 424, 561, 960
DraI	TTTAAA	2 cut(s)	763, 969
Eco147I	AGGCCT	1 cut(s)	566
Eco31I	GGTCTC	1 cut(s)	530
Eco47I	GGWCC	3 cut(s)	172, 446, 515
Eco57I	CTGAAG	1 cut(s)	308
Eco88I	CYCGRG	1 cut(s)	651
EcoO109I	RGGNCCY	1 cut(s)	515
EcoRII	CCWGG	2 cut(s)	225, 238
FaeI	CATG	1 cut(s)	707
FaiI	YATR	8 cut(s)	366, 402, 432, 444, 616, 680, 705, 814
FatI	CATG	1 cut(s)	703
FauI	CCCGC	1 cut(s)	162
Fnu4HI	GCNGC	3 cut(s)	108, 384, 839
FokI	GGATG	5 cut(s)	347, 450, 527, 634, 830
Fsp4HI	GCNGC	3 cut(s)	108, 384, 839
FspI	TGCGCA	1 cut(s)	724
GlaI	GCGC	4 cut(s)	106, 133, 199, 724
GluI	GCNGC	3 cut(s)	108, 384, 839
GsaI	CCCAGC	1 cut(s)	91
GsuI	CTGGAG	2 cut(s)	113, 148
HaeII	RGCGCY	2 cut(s)	108, 135
HaeIII	GGCC	2 cut(s)	230, 566
HapII	CCGG	1 cut(s)	195
HgaI	GACGC	2 cut(s)	495, 905
HhaI	GCGC	4 cut(s)	107, 134, 200, 725
Hin1II	CATG	1 cut(s)	707
Hin6I	GCGC	4 cut(s)	105, 132, 198, 723
HinP1I	GCGC	4 cut(s)	105, 132, 198, 723
HincII	GTYRAC	1 cut(s)	771
HindII	GTYRAC	1 cut(s)	771
HindIII	AAGCTT	1 cut(s)	551
HinfI	GANTC	1 cut(s)	739
HpaI	GTTAAC	1 cut(s)	771
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	3 cut(s)	613, 647, 818
Hpy166II	GTNNAC	3 cut(s)	175, 771, 793
Hpy188I	TCNGA	3 cut(s)	427, 917, 930
Hpy188III	TCNNGA	4 cut(s)	127, 252, 518, 651
Hpy8I	GTNNAC	3 cut(s)	175, 771, 793
Hpy99I	CGWCG	3 cut(s)	22, 25, 489
HpyAV	CCTTC	2 cut(s)	266, 948
HpyCH4III	ACNGT	3 cut(s)	261, 326, 946
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	5 cut(s)	496, 530, 707, 756, 881
HpyF10VI	GCNNNNNNNGC	4 cut(s)	138, 314, 380, 413
HpyF3I	CTNAG	4 cut(s)	354, 424, 561, 960
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	707
HspAI	GCGC	4 cut(s)	105, 132, 198, 723
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
KspAI	GTTAAC	1 cut(s)	771
LmnI	GCTCC	3 cut(s)	129, 404, 902
Lsp1109I	GCAGC	3 cut(s)	94, 370, 825
LweI	GCATC	3 cut(s)	325, 367, 428
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	4 cut(s)	211, 346, 692, 893
MboII	GAAGA	5 cut(s)	22, 281, 301, 596, 599
MfeI	CAATTG	1 cut(s)	783
MluCI	AATT	7 cut(s)	234, 302, 718, 758, 783, 865, 976
MmeI	TCCRAC	2 cut(s)	9, 908
MroNI	GCCGGC	1 cut(s)	194
MroXI	GAANNNNTTC	1 cut(s)	594
MseI	TTAA	3 cut(s)	762, 770, 968
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	227, 240
MunI	CAATTG	1 cut(s)	783
Mva1269I	GAATGC	2 cut(s)	674, 878
MvaI	CCWGG	2 cut(s)	227, 240
MwoI	GCNNNNNNNGC	4 cut(s)	138, 314, 380, 413
NaeI	GCCGGC	1 cut(s)	196
NgoMIV	GCCGGC	1 cut(s)	194
NlaIII	CATG	1 cut(s)	707
NlaIV	GGNNCC	3 cut(s)	173, 406, 448
NmuCI	GTSAC	3 cut(s)	211, 346, 893
NsbI	TGCGCA	1 cut(s)	724
NspI	RCATGY	1 cut(s)	707
PceI	AGGCCT	1 cut(s)	566
PctI	GAATGC	2 cut(s)	674, 878
PdiI	GCCGGC	1 cut(s)	196
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	1 cut(s)	739
PfoI	TCCNGGA	1 cut(s)	238
PkrI	GCNGC	3 cut(s)	109, 385, 840
PpuMI	RGGWCCY	1 cut(s)	515
Psp5II	RGGWCCY	1 cut(s)	515
Psp6I	CCWGG	2 cut(s)	225, 238
PspFI	CCCAGC	1 cut(s)	87
PspGI	CCWGG	2 cut(s)	225, 238
PspN4I	GGNNCC	3 cut(s)	173, 406, 448
PspPI	GGNCC	3 cut(s)	172, 446, 515
PspPPI	RGGWCCY	1 cut(s)	515
PstNI	CAGNNNCTG	2 cut(s)	330, 518
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	1 cut(s)	794
RsaNI	GTAC	1 cut(s)	793
SaqAI	TTAA	3 cut(s)	762, 770, 968
SatI	GCNGC	3 cut(s)	108, 384, 839
Sau96I	GGNCC	3 cut(s)	172, 446, 515
ScrFI	CCNGG	2 cut(s)	227, 240
SfaNI	GCATC	3 cut(s)	325, 367, 428
SfcI	CTRYAG	1 cut(s)	627
SinI	GGWCC	3 cut(s)	172, 446, 515
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	7 cut(s)	234, 302, 718, 758, 783, 865, 976
SseBI	AGGCCT	1 cut(s)	566
SsiI	CCGC	1 cut(s)	169
StuI	AGGCCT	1 cut(s)	566
StyD4I	CCNGG	2 cut(s)	225, 238
TaaI	ACNGT	3 cut(s)	261, 326, 946
TaiI	ACGT	1 cut(s)	26
TasI	AATT	7 cut(s)	234, 302, 718, 758, 783, 865, 976
TfiI	GAWTC	1 cut(s)	739
Tru1I	TTAA	3 cut(s)	762, 770, 968
Tru9I	TTAA	3 cut(s)	762, 770, 968
TscAI	CASTG	1 cut(s)	714
TseFI	GTSAC	3 cut(s)	211, 346, 893
TseI	GCWGC	3 cut(s)	107, 383, 838
Tsp45I	GTSAC	3 cut(s)	211, 346, 893
TspDTI	ATGAA	1 cut(s)	207
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	714
VpaK11BI	GGWCC	3 cut(s)	172, 446, 515
XapI	RAATTY	2 cut(s)	758, 976
XceI	RCATGY	1 cut(s)	707
XmnI	GAANNNNTTC	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.