mediator of RNA polymerase II transcription subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G23230 AT1G23230 AT1G23230 |
| fragaria_vesca | FvH4_4g33860 FvH4_4g33860 FvH4_4g33860 |
| malus_domestica | MD13G1030100.v1.1 MD16G1020900.v1.1 |
| prunus_persica | Prupe.1G331400_v2.0.a1 Prupe.1G331400_v2.0.a1 |
| pyrus_communis | pycom13g01840 pycom16g01870 |
| rosa_chinensis | RchiOBHm_Chr4g0443371 |
| rosa_laevigata | RLG00000005935 |
| rosa_multiflora | Rmu_ssc0000122.1_g000011 |
| rosa_roxburghii | Rroxscaffold_5G00383930 |
| rosa_rugosa | Rorug04G0345700 |
| rosa_samantha | Rh4AG401000 Rh4BG412500 Rh4CG427900 Rh4DG408000 |
| rosa_wichuraiana | Rw4G034580 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1514 |
| Acc16I | TGCGCA | 1 cut(s) | 971 |
| Acc36I | ACCTGC | 1 cut(s) | 565 |
| Acc65I | GGTACC | 1 cut(s) | 2346 |
| AccB1I | GGYRCC | 2 cut(s) | 2346, 2895 |
| AccBSI | CCGCTC | 1 cut(s) | 68 |
| AccI | GTMKAC | 2 cut(s) | 712, 3172 |
| AccII | CGCG | 2 cut(s) | 328, 1329 |
| AccIII | TCCGGA | 1 cut(s) | 3619 |
| AciI | CCGC | 7 cut(s) | 66, 326, 328, 543, 1171, 2065, 2756 |
| AcoI | YGGCCR | 6 cut(s) | 2161, 2439, 3025, 3423, 3787, 3982 |
| AcuI | CTGAAG | 5 cut(s) | 399, 1823, 3002, 4041, 4489 |
| AcvI | CACGTG | 1 cut(s) | 2930 |
| AcyI | GRCGYC | 1 cut(s) | 4199 |
| AfaI | GTAC | 4 cut(s) | 564, 2172, 2348, 4182 |
| AflIII | ACRYGT | 2 cut(s) | 1327, 2929 |
| AhlI | ACTAGT | 1 cut(s) | 2642 |
| AjnI | CCWGG | 7 cut(s) | 863, 871, 1378, 2023, 2163, 2287, 3817 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1243, 1275 |
| Alw21I | GWGCWC | 3 cut(s) | 368, 1657, 3970 |
| Alw26I | GTCTC | 6 cut(s) | 424, 862, 1362, 1676, 2412, 3762 |
| Alw44I | GTGCAC | 1 cut(s) | 364 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 284, 2003 |
| Ama87I | CYCGRG | 1 cut(s) | 45 |
| Aor13HI | TCCGGA | 1 cut(s) | 3619 |
| ApaLI | GTGCAC | 1 cut(s) | 364 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2024, 2056, 3994, 4026 |
| AseI | ATTAAT | 2 cut(s) | 1464, 3938 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 339, 3417 |
| Asp718I | GGTACC | 1 cut(s) | 2346 |
| AspLEI | GCGC | 3 cut(s) | 325, 972, 1963 |
| AspS9I | GGNCC | 9 cut(s) | 1370, 2510, 3040, 3084, 3227, 3283, 4392, 4649, 4801 |
| AsuHPI | GGTGA | 4 cut(s) | 615, 1170, 1589, 2787 |
| AsuII | TTCGAA | 1 cut(s) | 3526 |
| AvaI | CYCGRG | 1 cut(s) | 45 |
| AvaII | GGWCC | 6 cut(s) | 2510, 3040, 3084, 3227, 4392, 4801 |
| AxyI | CCTNAGG | 3 cut(s) | 129, 2952, 4033 |
| BaeGI | GKGCMC | 4 cut(s) | 368, 954, 2898, 3733 |
| BalI | TGGCCA | 4 cut(s) | 2163, 3425, 3789, 3984 |
| BamHI | GGATCC | 3 cut(s) | 2880, 3814, 4288 |
| BanI | GGYRCC | 2 cut(s) | 2346, 2895 |
| BanII | GRGCYC | 1 cut(s) | 3970 |
| BauI | CACGAG | 3 cut(s) | 69, 2577, 3089 |
| BbrPI | CACGTG | 1 cut(s) | 2930 |
| BbsI | GAAGAC | 4 cut(s) | 1381, 3250, 4139, 4540 |
| Bbv12I | GWGCWC | 3 cut(s) | 368, 1657, 3970 |
| BbvCI | CCTCAGC | 1 cut(s) | 31 |
| BceAI | ACGGC | 3 cut(s) | 684, 3040, 4252 |
| BciT130I | CCWGG | 7 cut(s) | 865, 873, 1380, 2025, 2165, 2289, 3819 |
| BciVI | GTATCC | 2 cut(s) | 1760, 3327 |
| BclI | TGATCA | 3 cut(s) | 1579, 1983, 2596 |
| BcoDI | GTCTC | 6 cut(s) | 424, 862, 1362, 1676, 2412, 3762 |
| BcuI | ACTAGT | 1 cut(s) | 2642 |
| BfmI | CTRYAG | 7 cut(s) | 236, 369, 426, 558, 1351, 2036, 4707 |
| BfuAI | ACCTGC | 1 cut(s) | 565 |
| BfuI | GTATCC | 2 cut(s) | 1760, 3327 |
| BglII | AGATCT | 1 cut(s) | 4600 |
| BlpI | GCTNAGC | 1 cut(s) | 4158 |
| Bme1390I | CCNGG | 7 cut(s) | 865, 873, 1380, 2025, 2165, 2289, 3819 |
| Bme18I | GGWCC | 6 cut(s) | 2510, 3040, 3084, 3227, 4392, 4801 |
| BmeT110I | CYCGRG | 1 cut(s) | 45 |
| BmgT120I | GGNCC | 9 cut(s) | 1370, 2510, 3040, 3084, 3227, 3283, 4392, 4649, 4801 |
| BmrFI | CCNGG | 7 cut(s) | 865, 873, 1380, 2025, 2165, 2289, 3819 |
| BmrI | ACTGGG | 4 cut(s) | 394, 842, 3653, 4259 |
| BmsI | GCATC | 8 cut(s) | 44, 1657, 2581, 2877, 3385, 3697, 3893, 4085 |
| BmuI | ACTGGG | 4 cut(s) | 394, 842, 3653, 4259 |
| BpiI | GAAGAC | 4 cut(s) | 1381, 3250, 4139, 4540 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3694, 3726 |
| BpmI | CTGGAG | 4 cut(s) | 886, 2025, 3273, 3732 |
| Bpu10I | CCTNAGC | 1 cut(s) | 31 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4158 |
| Bpu14I | TTCGAA | 1 cut(s) | 3526 |
| BpuEI | CTTGAG | 3 cut(s) | 1350, 2956, 4290 |
| BsaAI | YACGTR | 3 cut(s) | 1787, 2930, 4205 |
| BsaBI | GATNNNNATC | 2 cut(s) | 22, 2595 |
| BsaHI | GRCGYC | 1 cut(s) | 4199 |
| BsaI | GGTCTC | 3 cut(s) | 862, 1362, 2412 |
| BsaJI | CCNNGG | 8 cut(s) | 326, 438, 1956, 2350, 2711, 3286, 3399, 3985 |
| BsaWI | WCCGGW | 3 cut(s) | 482, 3619, 4678 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1256, 1286, 1294, 1324, 4638, 4668, 4722, 4752 |
| Bse21I | CCTNAGG | 3 cut(s) | 129, 2952, 4033 |
| Bse8I | GATNNNNATC | 2 cut(s) | 22, 2595 |
| BseAI | TCCGGA | 1 cut(s) | 3619 |
| BseBI | CCWGG | 7 cut(s) | 865, 873, 1380, 2025, 2165, 2289, 3819 |
| BseDI | CCNNGG | 8 cut(s) | 326, 438, 1956, 2350, 2711, 3286, 3399, 3985 |
| BseGI | GGATG | 9 cut(s) | 1529, 1921, 1938, 2992, 3884, 4004, 4427, 4549, 4789 |
| BseJI | GATNNNNATC | 2 cut(s) | 22, 2595 |
| BseRI | GAGGAG | 2 cut(s) | 189, 2676 |
| BseSI | GKGCMC | 4 cut(s) | 368, 954, 2898, 3733 |
| BseYI | CCCAGC | 2 cut(s) | 581, 2784 |
| BsgI | GTGCAG | 2 cut(s) | 326, 4676 |
| Bsh1236I | CGCG | 2 cut(s) | 328, 1329 |
| BshNI | GGYRCC | 2 cut(s) | 2346, 2895 |
| BsiHKAI | GWGCWC | 3 cut(s) | 368, 1657, 3970 |
| BsiHKCI | CYCGRG | 1 cut(s) | 45 |
| BsiSI | CCGG | 3 cut(s) | 483, 3620, 4679 |
| BslFI | GGGAC | 3 cut(s) | 1123, 3213, 4405 |
| BsmAI | GTCTC | 6 cut(s) | 424, 862, 1362, 1676, 2412, 3762 |
| BsmBI | CGTCTC | 1 cut(s) | 3762 |
| BsmFI | GGGAC | 3 cut(s) | 1123, 3213, 4405 |
| BsmI | GAATGC | 2 cut(s) | 4451, 4813 |
| Bso31I | GGTCTC | 3 cut(s) | 862, 1362, 2412 |
| BsoBI | CYCGRG | 1 cut(s) | 45 |
| Bsp119I | TTCGAA | 1 cut(s) | 3526 |
| Bsp1286I | GDGCHC | 6 cut(s) | 368, 954, 1657, 2898, 3733, 3970 |
| Bsp13I | TCCGGA | 1 cut(s) | 3619 |
| Bsp1407I | TGTACA | 1 cut(s) | 4180 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4158 |
| Bsp19I | CCATGG | 1 cut(s) | 1956 |
| BspACI | CCGC | 7 cut(s) | 66, 326, 328, 543, 1171, 2065, 2756 |
| BspEI | TCCGGA | 1 cut(s) | 3619 |
| BspFNI | CGCG | 2 cut(s) | 328, 1329 |
| BspMAI | CTGCAG | 4 cut(s) | 240, 430, 562, 4711 |
| BspMI | ACCTGC | 1 cut(s) | 565 |
| BspQI | GCTCTTC | 1 cut(s) | 4696 |
| BspT104I | TTCGAA | 1 cut(s) | 3526 |
| BspT107I | GGYRCC | 2 cut(s) | 2346, 2895 |
| BspTNI | GGTCTC | 3 cut(s) | 862, 1362, 2412 |
| BsrBI | CCGCTC | 1 cut(s) | 68 |
| BsrGI | TGTACA | 1 cut(s) | 4180 |
| BssECI | CCNNGG | 8 cut(s) | 326, 438, 1956, 2350, 2711, 3286, 3399, 3985 |
| BssNI | GRCGYC | 1 cut(s) | 4199 |
| BssSI | CACGAG | 3 cut(s) | 69, 2577, 3089 |
| BssT1I | CCWWGG | 5 cut(s) | 1956, 2350, 3286, 3399, 3985 |
| Bst2BI | CACGAG | 3 cut(s) | 69, 2577, 3089 |
| Bst2UI | CCWGG | 7 cut(s) | 865, 873, 1380, 2025, 2165, 2289, 3819 |
| Bst4CI | ACNGT | 7 cut(s) | 480, 1981, 2040, 2327, 2548, 2767, 2915 |
| Bst6I | CTCTTC | 4 cut(s) | 2694, 3876, 4508, 4696 |
| BstACI | GRCGYC | 1 cut(s) | 4199 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 464 |
| BstAUI | TGTACA | 1 cut(s) | 4180 |
| BstBAI | YACGTR | 3 cut(s) | 1787, 2930, 4205 |
| BstBI | TTCGAA | 1 cut(s) | 3526 |
| BstDSI | CCRYGG | 3 cut(s) | 326, 438, 1956 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 1365, 1571, 2888, 4373 |
| BstF5I | GGATG | 9 cut(s) | 1529, 1921, 1938, 2992, 3884, 4004, 4427, 4549, 4789 |
| BstFNI | CGCG | 2 cut(s) | 328, 1329 |
| BstHHI | GCGC | 3 cut(s) | 325, 972, 1963 |
| BstMAI | GTCTC | 6 cut(s) | 424, 862, 1362, 1676, 2412, 3762 |
| BstNI | CCWGG | 7 cut(s) | 865, 873, 1380, 2025, 2165, 2289, 3819 |
| BstNSI | RCATGY | 3 cut(s) | 1292, 3587, 4110 |
| BstSCI | CCNGG | 7 cut(s) | 863, 871, 1378, 2023, 2163, 2287, 3817 |
| BstSFI | CTRYAG | 7 cut(s) | 236, 369, 426, 558, 1351, 2036, 4707 |
| BstSLI | GKGCMC | 4 cut(s) | 368, 954, 2898, 3733 |
| BstSNI | TACGTA | 1 cut(s) | 1787 |
| BstUI | CGCG | 2 cut(s) | 328, 1329 |
| BstV2I | GAAGAC | 4 cut(s) | 1381, 3250, 4139, 4540 |
| BstX2I | RGATCY | 9 cut(s) | 1035, 1225, 1695, 1729, 2880, 3555, 3814, 4288, 4600 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 4142, 4380 |
| BstYI | RGATCY | 9 cut(s) | 1035, 1225, 1695, 1729, 2880, 3555, 3814, 4288, 4600 |
| Bsu36I | CCTNAGG | 3 cut(s) | 129, 2952, 4033 |
| BsuI | GTATCC | 2 cut(s) | 1760, 3327 |
| BtgI | CCRYGG | 3 cut(s) | 326, 438, 1956 |
| BtgZI | GCGATG | 1 cut(s) | 3564 |
| BtsCI | GGATG | 9 cut(s) | 1529, 1921, 1938, 2992, 3884, 4004, 4427, 4549, 4789 |
| BtsI | GCAGTG | 4 cut(s) | 314, 423, 979, 1093 |
| BveI | ACCTGC | 1 cut(s) | 565 |
| CaiI | CAGNNNCTG | 2 cut(s) | 284, 2003 |
| CfoI | GCGC | 3 cut(s) | 325, 972, 1963 |
| Cfr13I | GGNCC | 9 cut(s) | 1370, 2510, 3040, 3084, 3227, 3283, 4392, 4649, 4801 |
| Cfr42I | CCGCGG | 1 cut(s) | 329 |
| CseI | GACGC | 2 cut(s) | 2971, 4188 |
| Csp6I | GTAC | 4 cut(s) | 563, 2171, 2347, 4181 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3310, 3345 |
| CviQI | GTAC | 4 cut(s) | 563, 2171, 2347, 4181 |
| EaeI | YGGCCR | 6 cut(s) | 2161, 2439, 3025, 3423, 3787, 3982 |
| Eam1104I | CTCTTC | 4 cut(s) | 2694, 3876, 4508, 4696 |
| EarI | CTCTTC | 4 cut(s) | 2694, 3876, 4508, 4696 |
| EciI | GGCGGA | 1 cut(s) | 2771 |
| Ecl136II | GAGCTC | 1 cut(s) | 3968 |
| Eco105I | TACGTA | 1 cut(s) | 1787 |
| Eco130I | CCWWGG | 5 cut(s) | 1956, 2350, 3286, 3399, 3985 |
| Eco24I | GRGCYC | 1 cut(s) | 3970 |
| Eco31I | GGTCTC | 3 cut(s) | 862, 1362, 2412 |
| Eco32I | GATATC | 1 cut(s) | 3547 |
| Eco47I | GGWCC | 6 cut(s) | 2510, 3040, 3084, 3227, 4392, 4801 |
| Eco53kI | GAGCTC | 1 cut(s) | 3968 |
| Eco57I | CTGAAG | 5 cut(s) | 399, 1823, 3002, 4041, 4489 |
| Eco72I | CACGTG | 1 cut(s) | 2930 |
| Eco81I | CCTNAGG | 3 cut(s) | 129, 2952, 4033 |
| Eco88I | CYCGRG | 1 cut(s) | 45 |
| EcoICRI | GAGCTC | 1 cut(s) | 3968 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 1365, 1571, 2888, 4373 |
| EcoO109I | RGGNCCY | 6 cut(s) | 1370, 3040, 3227, 3283, 4392, 4649 |
| EcoRI | GAATTC | 2 cut(s) | 2519, 4765 |
| EcoRII | CCWGG | 7 cut(s) | 863, 871, 1378, 2023, 2163, 2287, 3817 |
| EcoRV | GATATC | 1 cut(s) | 3547 |
| EcoT14I | CCWWGG | 5 cut(s) | 1956, 2350, 3286, 3399, 3985 |
| EcoT22I | ATGCAT | 2 cut(s) | 4078, 4813 |
| EcoT38I | GRGCYC | 1 cut(s) | 3970 |
| ErhI | CCWWGG | 5 cut(s) | 1956, 2350, 3286, 3399, 3985 |
| Esp3I | CGTCTC | 1 cut(s) | 3762 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1467, 1499 |
| FaqI | GGGAC | 3 cut(s) | 1123, 3213, 4405 |
| FauI | CCCGC | 4 cut(s) | 73, 321, 550, 2058 |
| FauNDI | CATATG | 1 cut(s) | 795 |
| FbaI | TGATCA | 3 cut(s) | 1579, 1983, 2596 |
| FblI | GTMKAC | 2 cut(s) | 712, 3172 |
| FokI | GGATG | 9 cut(s) | 1536, 1928, 1945, 2999, 3871, 3991, 4414, 4556, 4776 |
| FriOI | GRGCYC | 1 cut(s) | 3970 |
| FspI | TGCGCA | 1 cut(s) | 971 |
| GlaI | GCGC | 3 cut(s) | 324, 971, 1962 |
| GsaI | CCCAGC | 2 cut(s) | 585, 2788 |
| GsuI | CTGGAG | 4 cut(s) | 886, 2025, 3273, 3732 |
| HapII | CCGG | 3 cut(s) | 483, 3620, 4679 |
| HgaI | GACGC | 2 cut(s) | 2971, 4188 |
| HhaI | GCGC | 3 cut(s) | 325, 972, 1963 |
| Hin1I | GRCGYC | 1 cut(s) | 4199 |
| Hin6I | GCGC | 3 cut(s) | 323, 970, 1961 |
| HinP1I | GCGC | 3 cut(s) | 323, 970, 1961 |
| HindIII | AAGCTT | 1 cut(s) | 3054 |
| HpaII | CCGG | 3 cut(s) | 483, 3620, 4679 |
| HphI | GGTGA | 4 cut(s) | 615, 1170, 1589, 2787 |
| Hpy166II | GTNNAC | 6 cut(s) | 366, 713, 1549, 2648, 3173, 3614 |
| Hpy8I | GTNNAC | 6 cut(s) | 366, 713, 1549, 2648, 3173, 3614 |
| Hpy99I | CGWCG | 2 cut(s) | 670, 2275 |
| HpyCH4III | ACNGT | 7 cut(s) | 480, 1981, 2040, 2327, 2548, 2767, 2915 |
| HpyCH4IV | ACGT | 9 cut(s) | 715, 1786, 2379, 2413, 2929, 3346, 3755, 4204, 4720 |
| HpySE526I | ACGT | 9 cut(s) | 715, 1786, 2379, 2413, 2929, 3346, 3755, 4204, 4720 |
| Hsp92I | GRCGYC | 1 cut(s) | 4199 |
| HspAI | GCGC | 3 cut(s) | 323, 970, 1961 |
| KflI | GGGWCCC | 1 cut(s) | 4392 |
| Kpn2I | TCCGGA | 1 cut(s) | 3619 |
| KpnI | GGTACC | 1 cut(s) | 2350 |
| Ksp22I | TGATCA | 3 cut(s) | 1579, 1983, 2596 |
| KspI | CCGCGG | 1 cut(s) | 329 |
| LguI | GCTCTTC | 1 cut(s) | 4696 |
| LmnI | GCTCC | 6 cut(s) | 190, 357, 3102, 3965, 3973, 4479 |
| LweI | GCATC | 8 cut(s) | 44, 1657, 2581, 2877, 3385, 3697, 3893, 4085 |
| MaeII | ACGT | 9 cut(s) | 715, 1786, 2379, 2413, 2929, 3346, 3755, 4204, 4720 |
| MbiI | CCGCTC | 1 cut(s) | 68 |
| MfeI | CAATTG | 5 cut(s) | 78, 1419, 1926, 1987, 4115 |
| MflI | RGATCY | 9 cut(s) | 1035, 1225, 1695, 1729, 2880, 3555, 3814, 4288, 4600 |
| MhlI | GDGCHC | 6 cut(s) | 368, 954, 1657, 2898, 3733, 3970 |
| MlsI | TGGCCA | 4 cut(s) | 2163, 3425, 3789, 3984 |
| MluI | ACGCGT | 1 cut(s) | 1327 |
| MluNI | TGGCCA | 4 cut(s) | 2163, 3425, 3789, 3984 |
| MmeI | TCCRAC | 4 cut(s) | 2537, 2991, 4266, 4316 |
| Mox20I | TGGCCA | 4 cut(s) | 2163, 3425, 3789, 3984 |
| Mph1103I | ATGCAT | 2 cut(s) | 4078, 4813 |
| MroI | TCCGGA | 1 cut(s) | 3619 |
| MroXI | GAANNNNTTC | 2 cut(s) | 339, 3417 |
| MscI | TGGCCA | 4 cut(s) | 2163, 3425, 3789, 3984 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1073, 4378 |
| Msp20I | TGGCCA | 4 cut(s) | 2163, 3425, 3789, 3984 |
| MspA1I | CMGCKG | 6 cut(s) | 328, 721, 2000, 2804, 3410, 4162 |
| MspI | CCGG | 3 cut(s) | 483, 3620, 4679 |
| MspR9I | CCNGG | 7 cut(s) | 865, 873, 1380, 2025, 2165, 2289, 3819 |
| MunI | CAATTG | 5 cut(s) | 78, 1419, 1926, 1987, 4115 |
| Mva1269I | GAATGC | 2 cut(s) | 4451, 4813 |
| MvaI | CCWGG | 7 cut(s) | 865, 873, 1380, 2025, 2165, 2289, 3819 |
| MvnI | CGCG | 2 cut(s) | 328, 1329 |
| NcoI | CCATGG | 1 cut(s) | 1956 |
| NdeI | CATATG | 1 cut(s) | 795 |
| NmeAIII | GCCGAG | 3 cut(s) | 971, 2038, 2467 |
| NsbI | TGCGCA | 1 cut(s) | 971 |
| NsiI | ATGCAT | 2 cut(s) | 4078, 4813 |
| NspI | RCATGY | 3 cut(s) | 1292, 3587, 4110 |
| NspV | TTCGAA | 1 cut(s) | 3526 |
| PaeI | GCATGC | 1 cut(s) | 1292 |
| PciSI | GCTCTTC | 1 cut(s) | 4696 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1802, 4568 |
| PctI | GAATGC | 2 cut(s) | 4451, 4813 |
| PdmI | GAANNNNTTC | 2 cut(s) | 339, 3417 |
| PflFI | GACNNNGTC | 1 cut(s) | 280 |
| PfoI | TCCNGGA | 1 cut(s) | 863 |
| PmaCI | CACGTG | 1 cut(s) | 2930 |
| PmlI | CACGTG | 1 cut(s) | 2930 |
| Ppu21I | YACGTR | 3 cut(s) | 1787, 2930, 4205 |
| PpuMI | RGGWCCY | 3 cut(s) | 3040, 3227, 4392 |
| PshBI | ATTAAT | 2 cut(s) | 1464, 3938 |
| PsiI | TTATAA | 1 cut(s) | 1514 |
| Psp124BI | GAGCTC | 1 cut(s) | 3970 |
| Psp5II | RGGWCCY | 3 cut(s) | 3040, 3227, 4392 |
| Psp6I | CCWGG | 7 cut(s) | 863, 871, 1378, 2023, 2163, 2287, 3817 |
| PspCI | CACGTG | 1 cut(s) | 2930 |
| PspFI | CCCAGC | 2 cut(s) | 581, 2784 |
| PspGI | CCWGG | 7 cut(s) | 863, 871, 1378, 2023, 2163, 2287, 3817 |
| PspPI | GGNCC | 9 cut(s) | 1370, 2510, 3040, 3084, 3227, 3283, 4392, 4649, 4801 |
| PspPPI | RGGWCCY | 3 cut(s) | 3040, 3227, 4392 |
| PstI | CTGCAG | 4 cut(s) | 240, 430, 562, 4711 |
| PstNI | CAGNNNCTG | 2 cut(s) | 284, 2003 |
| PsuI | RGATCY | 9 cut(s) | 1035, 1225, 1695, 1729, 2880, 3555, 3814, 4288, 4600 |
| PsyI | GACNNNGTC | 1 cut(s) | 280 |
| PvuII | CAGCTG | 5 cut(s) | 721, 2000, 2804, 3410, 4162 |
| RsaI | GTAC | 4 cut(s) | 564, 2172, 2348, 4182 |
| RsaNI | GTAC | 4 cut(s) | 563, 2171, 2347, 4181 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1073, 4378 |
| SacI | GAGCTC | 1 cut(s) | 3970 |
| SacII | CCGCGG | 1 cut(s) | 329 |
| SapI | GCTCTTC | 1 cut(s) | 4696 |
| Sau96I | GGNCC | 9 cut(s) | 1370, 2510, 3040, 3084, 3227, 3283, 4392, 4649, 4801 |
| ScrFI | CCNGG | 7 cut(s) | 865, 873, 1380, 2025, 2165, 2289, 3819 |
| SduI | GDGCHC | 6 cut(s) | 368, 954, 1657, 2898, 3733, 3970 |
| SfaNI | GCATC | 8 cut(s) | 44, 1657, 2581, 2877, 3385, 3697, 3893, 4085 |
| SfcI | CTRYAG | 7 cut(s) | 236, 369, 426, 558, 1351, 2036, 4707 |
| Sfr303I | CCGCGG | 1 cut(s) | 329 |
| SfuI | TTCGAA | 1 cut(s) | 3526 |
| SgrBI | CCGCGG | 1 cut(s) | 329 |
| SinI | GGWCC | 6 cut(s) | 2510, 3040, 3084, 3227, 4392, 4801 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1073, 4378 |
| SmlI | CTYRAG | 3 cut(s) | 1365, 2935, 4305 |
| SmoI | CTYRAG | 3 cut(s) | 1365, 2935, 4305 |
| SnaBI | TACGTA | 1 cut(s) | 1787 |
| SpeI | ACTAGT | 1 cut(s) | 2642 |
| SphI | GCATGC | 1 cut(s) | 1292 |
| SsiI | CCGC | 7 cut(s) | 66, 326, 328, 543, 1171, 2065, 2756 |
| SspI | AATATT | 2 cut(s) | 2971, 4336 |
| SstI | GAGCTC | 1 cut(s) | 3970 |
| StyD4I | CCNGG | 7 cut(s) | 863, 871, 1378, 2023, 2163, 2287, 3817 |
| StyI | CCWWGG | 5 cut(s) | 1956, 2350, 3286, 3399, 3985 |
| TaaI | ACNGT | 7 cut(s) | 480, 1981, 2040, 2327, 2548, 2767, 2915 |
| TaiI | ACGT | 9 cut(s) | 718, 1789, 2382, 2416, 2932, 3349, 3758, 4207, 4723 |
| TatI | WGTACW | 2 cut(s) | 562, 4180 |
| TauI | GCSGC | 1 cut(s) | 328 |
| TspGWI | ACGGA | 4 cut(s) | 427, 1233, 4420, 4445 |
| Tth111I | GACNNNGTC | 1 cut(s) | 280 |
| VneI | GTGCAC | 1 cut(s) | 364 |
| VpaK11BI | GGWCC | 6 cut(s) | 2510, 3040, 3084, 3227, 4392, 4801 |
| VspI | ATTAAT | 2 cut(s) | 1464, 3938 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 1365, 1571, 2888, 4373 |
| XbaI | TCTAGA | 1 cut(s) | 220 |
| XceI | RCATGY | 3 cut(s) | 1292, 3587, 4110 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1314 |
| XmiI | GTMKAC | 2 cut(s) | 712, 3172 |
| XmnI | GAANNNNTTC | 2 cut(s) | 339, 3417 |
| Zsp2I | ATGCAT | 2 cut(s) | 4078, 4813 |