mediator of RNA polymerase II transcription subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G23230 AT1G23230 AT1G23230 |
| fragaria_vesca | FvH4_4g33860 FvH4_4g33860 FvH4_4g33860 |
| malus_domestica | MD13G1030100.v1.1 MD16G1020900.v1.1 |
| prunus_persica | Prupe.1G331400_v2.0.a1 Prupe.1G331400_v2.0.a1 |
| pyrus_communis | pycom13g01840 pycom16g01870 |
| rosa_chinensis | RchiOBHm_Chr4g0443371 |
| rosa_laevigata | RLG00000005935 |
| rosa_multiflora | Rmu_ssc0000122.1_g000011 |
| rosa_roxburghii | Rroxscaffold_5G00383930 |
| rosa_rugosa | Rorug04G0345700 |
| rosa_samantha | Rh4AG401000 Rh4BG412500 Rh4CG427900 Rh4DG408000 |
| rosa_wichuraiana | Rw4G034580 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1508, 1760 |
| AarI | CACCTGC | 1 cut(s) | 628 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1478 |
| Acc16I | TGCGCA | 1 cut(s) | 965 |
| Acc36I | ACCTGC | 3 cut(s) | 628, 2149, 2187 |
| Acc65I | GGTACC | 1 cut(s) | 2340 |
| AccB1I | GGYRCC | 3 cut(s) | 2340, 2889, 3221 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1211, 4147 |
| AccI | GTMKAC | 3 cut(s) | 706, 3425, 4711 |
| AccII | CGCG | 5 cut(s) | 40, 66, 144, 3018, 3340 |
| AcoI | YGGCCR | 5 cut(s) | 2433, 3417, 3493, 3781, 4138 |
| AcuI | CTGAAG | 5 cut(s) | 1457, 1817, 2250, 3990, 4035 |
| AcvI | CACGTG | 1 cut(s) | 2924 |
| AcyI | GRCGYC | 2 cut(s) | 2890, 3222 |
| AfaI | GTAC | 5 cut(s) | 1194, 1294, 2166, 2342, 3534 |
| AflII | CTTAAG | 1 cut(s) | 1586 |
| AflIII | ACRYGT | 2 cut(s) | 1321, 2923 |
| AjiI | CACGTC | 1 cut(s) | 3580 |
| AjnI | CCWGG | 6 cut(s) | 865, 1372, 2343, 2916, 3244, 3811 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1237, 1269, 3988, 4020 |
| Alw21I | GWGCWC | 2 cut(s) | 368, 3727 |
| Alw26I | GTCTC | 6 cut(s) | 424, 856, 1670, 1858, 3867, 4663 |
| Alw44I | GTGCAC | 1 cut(s) | 364 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 284, 2785, 4058 |
| ApaLI | GTGCAC | 1 cut(s) | 364 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2018, 2050 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 577 |
| Asp718I | GGTACC | 1 cut(s) | 2340 |
| AspLEI | GCGC | 8 cut(s) | 68, 181, 966, 1957, 2892, 3018, 3224, 3340 |
| AspS9I | GGNCC | 9 cut(s) | 669, 1352, 1364, 2504, 3034, 3078, 4282, 4386, 4643 |
| AsuC2I | CCSGG | 1 cut(s) | 2283 |
| AsuHPI | GGTGA | 4 cut(s) | 609, 1157, 1164, 1296 |
| AsuII | TTCGAA | 1 cut(s) | 3520 |
| AvaII | GGWCC | 7 cut(s) | 1352, 1364, 2504, 3034, 3078, 4282, 4386 |
| AxyI | CCTNAGG | 1 cut(s) | 2946 |
| BaeGI | GKGCMC | 2 cut(s) | 368, 4034 |
| BalI | TGGCCA | 3 cut(s) | 3419, 3783, 4140 |
| BamHI | GGATCC | 2 cut(s) | 2874, 3808 |
| BanI | GGYRCC | 3 cut(s) | 2340, 2889, 3221 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4081, 4113 |
| BbrPI | CACGTG | 1 cut(s) | 2924 |
| Bbv12I | GWGCWC | 2 cut(s) | 368, 3727 |
| BbvCI | CCTCAGC | 1 cut(s) | 31 |
| BceAI | ACGGC | 4 cut(s) | 385, 441, 3377, 3508 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3314, 3348 |
| BciT130I | CCWGG | 6 cut(s) | 867, 1374, 2345, 2918, 3246, 3813 |
| BciVI | GTATCC | 2 cut(s) | 1754, 3321 |
| BclI | TGATCA | 2 cut(s) | 1977, 2590 |
| BcnI | CCSGG | 1 cut(s) | 2283 |
| BcoDI | GTCTC | 6 cut(s) | 424, 856, 1670, 1858, 3867, 4663 |
| BfmI | CTRYAG | 2 cut(s) | 660, 2030 |
| BfoI | RGCGCY | 2 cut(s) | 2893, 3225 |
| BfrI | CTTAAG | 1 cut(s) | 1586 |
| BfuAI | ACCTGC | 3 cut(s) | 628, 2149, 2187 |
| BfuI | GTATCC | 2 cut(s) | 1754, 3321 |
| BglII | AGATCT | 1 cut(s) | 4594 |
| BlpI | GCTNAGC | 2 cut(s) | 4152, 4557 |
| Bme1390I | CCNGG | 7 cut(s) | 867, 1374, 2283, 2345, 2918, 3246, 3813 |
| Bme18I | GGWCC | 7 cut(s) | 1352, 1364, 2504, 3034, 3078, 4282, 4386 |
| BmgBI | CACGTC | 1 cut(s) | 3580 |
| BmgT120I | GGNCC | 9 cut(s) | 669, 1352, 1364, 2504, 3034, 3078, 4282, 4386, 4643 |
| BmrFI | CCNGG | 7 cut(s) | 867, 1374, 2283, 2345, 2918, 3246, 3813 |
| BmrI | ACTGGG | 5 cut(s) | 394, 636, 836, 3647, 4253 |
| BmsI | GCATC | 6 cut(s) | 1651, 2871, 3379, 3887, 4202, 4738 |
| BmuI | ACTGGG | 5 cut(s) | 394, 636, 836, 3647, 4253 |
| BpmI | CTGGAG | 5 cut(s) | 221, 2019, 2886, 3597, 3726 |
| Bpu10I | CCTNAGC | 1 cut(s) | 31 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 4152, 4557 |
| Bpu14I | TTCGAA | 1 cut(s) | 3520 |
| BpuEI | CTTGAG | 2 cut(s) | 1344, 4284 |
| BpuMI | CCSGG | 1 cut(s) | 2283 |
| BsaAI | YACGTR | 3 cut(s) | 1781, 2924, 4199 |
| BsaBI | GATNNNNATC | 3 cut(s) | 138, 3135, 3309 |
| BsaHI | GRCGYC | 2 cut(s) | 2890, 3222 |
| BsaI | GGTCTC | 2 cut(s) | 856, 4663 |
| BsaJI | CCNNGG | 8 cut(s) | 326, 423, 866, 1372, 2344, 3244, 3280, 4026 |
| BsaWI | WCCGGW | 1 cut(s) | 3349 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1250, 1280, 4632, 4662 |
| Bse118I | RCCGGY | 1 cut(s) | 2017 |
| Bse21I | CCTNAGG | 1 cut(s) | 2946 |
| Bse8I | GATNNNNATC | 3 cut(s) | 138, 3135, 3309 |
| BseBI | CCWGG | 6 cut(s) | 867, 1374, 2345, 2918, 3246, 3813 |
| BseDI | CCNNGG | 8 cut(s) | 326, 423, 866, 1372, 2344, 3244, 3280, 4026 |
| BseGI | GGATG | 9 cut(s) | 910, 1915, 1932, 2986, 3136, 3878, 3998, 4543, 4783 |
| BseJI | GATNNNNATC | 3 cut(s) | 138, 3135, 3309 |
| BseRI | GAGGAG | 1 cut(s) | 189 |
| BseSI | GKGCMC | 2 cut(s) | 368, 4034 |
| BseYI | CCCAGC | 1 cut(s) | 584 |
| BsgI | GTGCAG | 3 cut(s) | 326, 331, 4670 |
| Bsh1236I | CGCG | 5 cut(s) | 40, 66, 144, 3018, 3340 |
| BshNI | GGYRCC | 3 cut(s) | 2340, 2889, 3221 |
| BsiHKAI | GWGCWC | 2 cut(s) | 368, 3727 |
| BsiSI | CCGG | 3 cut(s) | 2018, 2283, 3350 |
| BslFI | GGGAC | 3 cut(s) | 388, 1117, 4399 |
| BsmAI | GTCTC | 6 cut(s) | 424, 856, 1670, 1858, 3867, 4663 |
| BsmFI | GGGAC | 3 cut(s) | 388, 1117, 4399 |
| BsmI | GAATGC | 4 cut(s) | 3022, 3317, 4445, 4558 |
| Bso31I | GGTCTC | 2 cut(s) | 856, 4663 |
| Bsp119I | TTCGAA | 1 cut(s) | 3520 |
| Bsp1286I | GDGCHC | 3 cut(s) | 368, 3727, 4034 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 4152, 4557 |
| Bsp68I | TCGCGA | 2 cut(s) | 40, 144 |
| BspFNI | CGCG | 5 cut(s) | 40, 66, 144, 3018, 3340 |
| BspMAI | CTGCAG | 1 cut(s) | 664 |
| BspMI | ACCTGC | 3 cut(s) | 628, 2149, 2187 |
| BspQI | GCTCTTC | 1 cut(s) | 4690 |
| BspT104I | TTCGAA | 1 cut(s) | 3520 |
| BspT107I | GGYRCC | 3 cut(s) | 2340, 2889, 3221 |
| BspTI | CTTAAG | 1 cut(s) | 1586 |
| BspTNI | GGTCTC | 2 cut(s) | 856, 4663 |
| BsrFI | RCCGGY | 1 cut(s) | 2017 |
| BssAI | RCCGGY | 1 cut(s) | 2017 |
| BssECI | CCNNGG | 8 cut(s) | 326, 423, 866, 1372, 2344, 3244, 3280, 4026 |
| BssNAI | GTATAC | 1 cut(s) | 3426 |
| BssNI | GRCGYC | 2 cut(s) | 2890, 3222 |
| BssT1I | CCWWGG | 2 cut(s) | 3280, 4026 |
| Bst1107I | GTATAC | 1 cut(s) | 3426 |
| Bst2UI | CCWGG | 6 cut(s) | 867, 1374, 2345, 2918, 3246, 3813 |
| Bst4CI | ACNGT | 6 cut(s) | 483, 1975, 2034, 2542, 2761, 3861 |
| Bst6I | CTCTTC | 4 cut(s) | 89, 3870, 4502, 4690 |
| BstACI | GRCGYC | 2 cut(s) | 2890, 3222 |
| BstAFI | CTTAAG | 1 cut(s) | 1586 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3028 |
| BstBAI | YACGTR | 3 cut(s) | 1781, 2924, 4199 |
| BstBI | TTCGAA | 1 cut(s) | 3520 |
| BstDSI | CCRYGG | 2 cut(s) | 326, 423 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1359 |
| BstF5I | GGATG | 9 cut(s) | 910, 1915, 1932, 2986, 3136, 3878, 3998, 4543, 4783 |
| BstFNI | CGCG | 5 cut(s) | 40, 66, 144, 3018, 3340 |
| BstH2I | RGCGCY | 2 cut(s) | 2893, 3225 |
| BstHHI | GCGC | 8 cut(s) | 68, 181, 966, 1957, 2892, 3018, 3224, 3340 |
| BstMAI | GTCTC | 6 cut(s) | 424, 856, 1670, 1858, 3867, 4663 |
| BstNI | CCWGG | 6 cut(s) | 867, 1374, 2345, 2918, 3246, 3813 |
| BstNSI | RCATGY | 5 cut(s) | 1286, 1871, 3054, 4104, 4137 |
| BstSCI | CCNGG | 7 cut(s) | 865, 1372, 2281, 2343, 2916, 3244, 3811 |
| BstSFI | CTRYAG | 2 cut(s) | 660, 2030 |
| BstSLI | GKGCMC | 2 cut(s) | 368, 4034 |
| BstSNI | TACGTA | 1 cut(s) | 1781 |
| BstUI | CGCG | 5 cut(s) | 40, 66, 144, 3018, 3340 |
| BstX2I | RGATCY | 8 cut(s) | 1029, 1219, 1689, 1723, 2874, 3549, 3808, 4594 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 4136, 4374 |
| BstYI | RGATCY | 8 cut(s) | 1029, 1219, 1689, 1723, 2874, 3549, 3808, 4594 |
| BstZ17I | GTATAC | 1 cut(s) | 3426 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2946 |
| BsuI | GTATCC | 2 cut(s) | 1754, 3321 |
| BtgI | CCRYGG | 2 cut(s) | 326, 423 |
| BtrI | CACGTC | 1 cut(s) | 3580 |
| BtsCI | GGATG | 9 cut(s) | 910, 1915, 1932, 2986, 3136, 3878, 3998, 4543, 4783 |
| BtsI | GCAGTG | 3 cut(s) | 314, 973, 1158 |
| BtuMI | TCGCGA | 2 cut(s) | 40, 144 |
| BveI | ACCTGC | 3 cut(s) | 628, 2149, 2187 |
| CaiI | CAGNNNCTG | 3 cut(s) | 284, 2785, 4058 |
| CfoI | GCGC | 8 cut(s) | 68, 181, 966, 1957, 2892, 3018, 3224, 3340 |
| Cfr10I | RCCGGY | 1 cut(s) | 2017 |
| Cfr13I | GGNCC | 9 cut(s) | 669, 1352, 1364, 2504, 3034, 3078, 4282, 4386, 4643 |
| CseI | GACGC | 2 cut(s) | 2594, 3937 |
| Csp6I | GTAC | 5 cut(s) | 1193, 1293, 2165, 2341, 3533 |
| CviQI | GTAC | 5 cut(s) | 1193, 1293, 2165, 2341, 3533 |
| DinI | GGCGCC | 2 cut(s) | 2891, 3223 |
| DraI | TTTAAA | 3 cut(s) | 756, 2118, 3708 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1478 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1478 |
| EaeI | YGGCCR | 5 cut(s) | 2433, 3417, 3493, 3781, 4138 |
| Eam1104I | CTCTTC | 4 cut(s) | 89, 3870, 4502, 4690 |
| EarI | CTCTTC | 4 cut(s) | 89, 3870, 4502, 4690 |
| EciI | GGCGGA | 1 cut(s) | 4550 |
| Eco105I | TACGTA | 1 cut(s) | 1781 |
| Eco130I | CCWWGG | 2 cut(s) | 3280, 4026 |
| Eco31I | GGTCTC | 2 cut(s) | 856, 4663 |
| Eco32I | GATATC | 1 cut(s) | 3541 |
| Eco47I | GGWCC | 7 cut(s) | 1352, 1364, 2504, 3034, 3078, 4282, 4386 |
| Eco57I | CTGAAG | 5 cut(s) | 1457, 1817, 2250, 3990, 4035 |
| Eco72I | CACGTG | 1 cut(s) | 2924 |
| Eco81I | CCTNAGG | 1 cut(s) | 2946 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1359 |
| EcoO109I | RGGNCCY | 5 cut(s) | 1352, 1364, 3034, 4386, 4643 |
| EcoRI | GAATTC | 2 cut(s) | 2513, 3522 |
| EcoRII | CCWGG | 6 cut(s) | 865, 1372, 2343, 2916, 3244, 3811 |
| EcoRV | GATATC | 1 cut(s) | 3541 |
| EcoT14I | CCWWGG | 2 cut(s) | 3280, 4026 |
| EgeI | GGCGCC | 2 cut(s) | 2891, 3223 |
| EheI | GGCGCC | 2 cut(s) | 2891, 3223 |
| ErhI | CCWWGG | 2 cut(s) | 3280, 4026 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1461, 1493, 2248, 2280 |
| FaqI | GGGAC | 3 cut(s) | 388, 1117, 4399 |
| FauI | CCCGC | 4 cut(s) | 2052, 2147, 3011, 3322 |
| FauNDI | CATATG | 1 cut(s) | 789 |
| FbaI | TGATCA | 2 cut(s) | 1977, 2590 |
| FblI | GTMKAC | 3 cut(s) | 706, 3425, 4711 |
| FokI | GGATG | 9 cut(s) | 917, 1922, 1939, 2993, 3143, 3865, 3985, 4550, 4770 |
| FspI | TGCGCA | 1 cut(s) | 965 |
| GlaI | GCGC | 8 cut(s) | 67, 180, 965, 1956, 2891, 3017, 3223, 3339 |
| GsaI | CCCAGC | 1 cut(s) | 588 |
| GsuI | CTGGAG | 5 cut(s) | 221, 2019, 2886, 3597, 3726 |
| HaeII | RGCGCY | 2 cut(s) | 2893, 3225 |
| HapII | CCGG | 3 cut(s) | 2018, 2283, 3350 |
| HgaI | GACGC | 2 cut(s) | 2594, 3937 |
| HhaI | GCGC | 8 cut(s) | 68, 181, 966, 1957, 2892, 3018, 3224, 3340 |
| Hin1I | GRCGYC | 2 cut(s) | 2890, 3222 |
| Hin6I | GCGC | 8 cut(s) | 66, 179, 964, 1955, 2890, 3016, 3222, 3338 |
| HinP1I | GCGC | 8 cut(s) | 66, 179, 964, 1955, 2890, 3016, 3222, 3338 |
| HincII | GTYRAC | 2 cut(s) | 925, 1443 |
| HindII | GTYRAC | 2 cut(s) | 925, 1443 |
| HindIII | AAGCTT | 5 cut(s) | 1005, 1159, 2142, 3509, 4475 |
| HpaII | CCGG | 3 cut(s) | 2018, 2283, 3350 |
| HphI | GGTGA | 4 cut(s) | 609, 1157, 1164, 1296 |
| Hpy99I | CGWCG | 3 cut(s) | 25, 28, 3931 |
| HpyCH4III | ACNGT | 6 cut(s) | 483, 1975, 2034, 2542, 2761, 3861 |
| HpyCH4IV | ACGT | 8 cut(s) | 709, 1321, 1780, 2407, 2923, 3579, 4198, 4714 |
| HpySE526I | ACGT | 8 cut(s) | 709, 1321, 1780, 2407, 2923, 3579, 4198, 4714 |
| Hsp92I | GRCGYC | 2 cut(s) | 2890, 3222 |
| HspAI | GCGC | 8 cut(s) | 66, 179, 964, 1955, 2890, 3016, 3222, 3338 |
| KasI | GGCGCC | 2 cut(s) | 2889, 3221 |
| KflI | GGGWCCC | 1 cut(s) | 4386 |
| KpnI | GGTACC | 1 cut(s) | 2344 |
| Ksp22I | TGATCA | 2 cut(s) | 1977, 2590 |
| LguI | GCTCTTC | 1 cut(s) | 4690 |
| LmnI | GCTCC | 8 cut(s) | 240, 1342, 2867, 3730, 3959, 4161, 4465, 4473 |
| LweI | GCATC | 6 cut(s) | 1651, 2871, 3379, 3887, 4202, 4738 |
| MaeII | ACGT | 8 cut(s) | 709, 1321, 1780, 2407, 2923, 3579, 4198, 4714 |
| MfeI | CAATTG | 4 cut(s) | 1413, 1920, 1981, 4109 |
| MflI | RGATCY | 8 cut(s) | 1029, 1219, 1689, 1723, 2874, 3549, 3808, 4594 |
| MhlI | GDGCHC | 3 cut(s) | 368, 3727, 4034 |
| MlsI | TGGCCA | 3 cut(s) | 3419, 3783, 4140 |
| MluNI | TGGCCA | 3 cut(s) | 3419, 3783, 4140 |
| Mly113I | GGCGCC | 2 cut(s) | 2890, 3222 |
| MlyI | GAGTC | 7 cut(s) | 290, 604, 1099, 2269, 3572, 3733, 4250 |
| MmeI | TCCRAC | 2 cut(s) | 2531, 4260 |
| Mox20I | TGGCCA | 3 cut(s) | 3419, 3783, 4140 |
| MroXI | GAANNNNTTC | 1 cut(s) | 577 |
| MscI | TGGCCA | 3 cut(s) | 3419, 3783, 4140 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1067, 2975, 4372 |
| Msp20I | TGGCCA | 3 cut(s) | 3419, 3783, 4140 |
| MspA1I | CMGCKG | 3 cut(s) | 2798, 3404, 3829 |
| MspCI | CTTAAG | 1 cut(s) | 1586 |
| MspI | CCGG | 3 cut(s) | 2018, 2283, 3350 |
| MspR9I | CCNGG | 7 cut(s) | 867, 1374, 2283, 2345, 2918, 3246, 3813 |
| MunI | CAATTG | 4 cut(s) | 1413, 1920, 1981, 4109 |
| Mva1269I | GAATGC | 4 cut(s) | 3022, 3317, 4445, 4558 |
| MvaI | CCWGG | 6 cut(s) | 867, 1374, 2345, 2918, 3246, 3813 |
| MvnI | CGCG | 5 cut(s) | 40, 66, 144, 3018, 3340 |
| NarI | GGCGCC | 2 cut(s) | 2890, 3222 |
| NciI | CCSGG | 1 cut(s) | 2283 |
| NdeI | CATATG | 1 cut(s) | 789 |
| NmeAIII | GCCGAG | 2 cut(s) | 2461, 4692 |
| NruI | TCGCGA | 2 cut(s) | 40, 144 |
| NsbI | TGCGCA | 1 cut(s) | 965 |
| NspI | RCATGY | 5 cut(s) | 1286, 1871, 3054, 4104, 4137 |
| NspV | TTCGAA | 1 cut(s) | 3520 |
| PaeI | GCATGC | 1 cut(s) | 1286 |
| PaqCI | CACCTGC | 1 cut(s) | 628 |
| PciSI | GCTCTTC | 1 cut(s) | 4690 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2929 |
| PctI | GAATGC | 4 cut(s) | 3022, 3317, 4445, 4558 |
| PdmI | GAANNNNTTC | 1 cut(s) | 577 |
| PflFI | GACNNNGTC | 2 cut(s) | 280, 613 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1211, 4147 |
| PleI | GAGTC | 7 cut(s) | 289, 604, 1099, 2268, 3571, 3733, 4250 |
| PluTI | GGCGCC | 2 cut(s) | 2893, 3225 |
| PmaCI | CACGTG | 1 cut(s) | 2924 |
| PmlI | CACGTG | 1 cut(s) | 2924 |
| PpsI | GAGTC | 7 cut(s) | 289, 604, 1099, 2268, 3571, 3733, 4250 |
| Ppu21I | YACGTR | 3 cut(s) | 1781, 2924, 4199 |
| PpuMI | RGGWCCY | 4 cut(s) | 1352, 1364, 3034, 4386 |
| PsiI | TTATAA | 2 cut(s) | 1508, 1760 |
| Psp5II | RGGWCCY | 4 cut(s) | 1352, 1364, 3034, 4386 |
| Psp6I | CCWGG | 6 cut(s) | 865, 1372, 2343, 2916, 3244, 3811 |
| PspCI | CACGTG | 1 cut(s) | 2924 |
| PspFI | CCCAGC | 1 cut(s) | 584 |
| PspGI | CCWGG | 6 cut(s) | 865, 1372, 2343, 2916, 3244, 3811 |
| PspPI | GGNCC | 9 cut(s) | 669, 1352, 1364, 2504, 3034, 3078, 4282, 4386, 4643 |
| PspPPI | RGGWCCY | 4 cut(s) | 1352, 1364, 3034, 4386 |
| PstI | CTGCAG | 1 cut(s) | 664 |
| PstNI | CAGNNNCTG | 3 cut(s) | 284, 2785, 4058 |
| PsuI | RGATCY | 8 cut(s) | 1029, 1219, 1689, 1723, 2874, 3549, 3808, 4594 |
| PsyI | GACNNNGTC | 2 cut(s) | 280, 613 |
| PvuII | CAGCTG | 2 cut(s) | 2798, 3829 |
| RruI | TCGCGA | 2 cut(s) | 40, 144 |
| RsaI | GTAC | 5 cut(s) | 1194, 1294, 2166, 2342, 3534 |
| RsaNI | GTAC | 5 cut(s) | 1193, 1293, 2165, 2341, 3533 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1067, 2975, 4372 |
| SapI | GCTCTTC | 1 cut(s) | 4690 |
| Sau96I | GGNCC | 9 cut(s) | 669, 1352, 1364, 2504, 3034, 3078, 4282, 4386, 4643 |
| SchI | GAGTC | 7 cut(s) | 290, 604, 1099, 2269, 3572, 3733, 4250 |
| ScrFI | CCNGG | 7 cut(s) | 867, 1374, 2283, 2345, 2918, 3246, 3813 |
| SduI | GDGCHC | 3 cut(s) | 368, 3727, 4034 |
| SfaNI | GCATC | 6 cut(s) | 1651, 2871, 3379, 3887, 4202, 4738 |
| SfcI | CTRYAG | 2 cut(s) | 660, 2030 |
| SfoI | GGCGCC | 2 cut(s) | 2891, 3223 |
| SfuI | TTCGAA | 1 cut(s) | 3520 |
| SinI | GGWCC | 7 cut(s) | 1352, 1364, 2504, 3034, 3078, 4282, 4386 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1067, 2975, 4372 |
| SmlI | CTYRAG | 3 cut(s) | 1359, 1586, 4299 |
| SmoI | CTYRAG | 3 cut(s) | 1359, 1586, 4299 |
| SnaBI | TACGTA | 1 cut(s) | 1781 |
| SphI | GCATGC | 1 cut(s) | 1286 |
| SspDI | GGCGCC | 2 cut(s) | 2889, 3221 |
| SspI | AATATT | 3 cut(s) | 2173, 2965, 4330 |
| StyD4I | CCNGG | 7 cut(s) | 865, 1372, 2281, 2343, 2916, 3244, 3811 |
| StyI | CCWWGG | 2 cut(s) | 3280, 4026 |
| TaaI | ACNGT | 6 cut(s) | 483, 1975, 2034, 2542, 2761, 3861 |
| TaiI | ACGT | 8 cut(s) | 712, 1324, 1783, 2410, 2926, 3582, 4201, 4717 |
| TatI | WGTACW | 3 cut(s) | 1192, 1292, 3532 |
| TauI | GCSGC | 1 cut(s) | 1518 |
| TspGWI | ACGGA | 4 cut(s) | 663, 2219, 4439, 4452 |
| Tth111I | GACNNNGTC | 2 cut(s) | 280, 613 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1211, 4147 |
| Vha464I | CTTAAG | 1 cut(s) | 1586 |
| VneI | GTGCAC | 1 cut(s) | 364 |
| VpaK11BI | GGWCC | 7 cut(s) | 1352, 1364, 2504, 3034, 3078, 4282, 4386 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1359 |
| XceI | RCATGY | 5 cut(s) | 1286, 1871, 3054, 4104, 4137 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1308 |
| XmiI | GTMKAC | 3 cut(s) | 706, 3425, 4711 |
| XmnI | GAANNNNTTC | 1 cut(s) | 577 |