Prupe.1G336100_v2.0.a1

Clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017660
Physical Location & Seq
Forward (+)
31709182 .. 31710675
1494 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G336100.1

Sequence Viewer

Length: 1494 bp
ATGCAGAGGCGATTTCGGCAAGTCTGCACTGCTCTAAGAGAGCACAGCTCTGTGAGATATGCCAAGATTGCCACTGTTGGAGGGTTCTGCAATGTTGAACTCATTATCGTAAAAGCTACAGCTCCTGACGACTTGCCATTGCCTGAAAAATACATTCAGGAGCTCTTGAAAATCTTCTCCATCTCTCCATCTTCATTGAGAGAATTTTCACTCAGCTTCACTCGCCGTTTTGGCAAGACTCGCTGCTGGCGGGTTGCACTCAAGTGTCTAATCCTCCTCCACCGTCTGCTTCGTGCTGTGCCTGAAGACAGCCAGTTCCGGTCTGAGCTCCTTTGGACACGATCCAATGGCCTGATGTCTCTCAGTCAGTGTCACTTCCGTGATGATTCATCCTCGGCGTCTGAAGATTACACAGCCTTTATTAGATCCTATGCTCGGCTCCTTGACGAAGCTCTTCATTGCTTTTGGTTGGATAGCAAGCCAGCCTACAATCAGCAAGAACATCACTGTCAAGAATATGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGCAATTTGAGAGCTTACCAAACAAAATGACAGAAGTTGGTCGAATGCTTGAAGTGTTGCCACAGCTGCAAAGCCTCATTGACCTTGTCATGGACTGCCGTCCCACAGGAGCAGCAGCGAAAGCTTTCCTCGTCCAGTTGGCTATGAAGCATATCATTAGAGATAGCTTTATGTGCTACACAATCTTTCGGAGGGAAATTGTTATGGTTCTGGACAGCCTGTTTCAGATGCCATACAGGAGTTGCATATCAGCATTTGGTATTTACAAGAAGGCGGCTGTCCAAGCAAATAAACTCTGTGAGTTTTATGAGTGGTGTAAGGCAATGGGGTTCTGTGGAGCATATGAATATCCCTTCATAGATCAAATCCCACATATTCAAATTCATGCTCTCGAGAATTTGCTCAATGGCATGTGGCAGCTGACGGAGTCCTCTTCTACACCAACTTCTTCACCAACTTCATCAGCATCAGTGCCATCATCTTTCGTCGAGTACTCTAGTTCGACTTCAACAGAGGACGACATTAATAAGGATCATATCCTCGTTACGACGAAATGGGAGAAGCCCTTAATTCAGTTTGATAGAGGTTCTAACGAGGAGAAGCCATTAATTCAGCTTGATAGAGGTTATGACGAGGAGAAACCATTGATTCAGTTTGAAGATGACACCGACGAGGAGAGCTGGGAGAGCCTTCTAGAAGCTTCCATTAACATGTCACCTCCGGCTGCTCAACAGAATAATATGTGCTTCAACAATAATGGAACTTATGGATCATATGGATATTGTAATTACAGGAACGTGGTCCAACATGGAGATCAAAAGGATGCATGGCAGATGCAAATATACAACGCAAATTCTCTTAATCCTTTCTATATCAGCCACTCATCAGGCCAAACTACTTATTTATCCCCAAATCTAGCTGAATAA

Protein Analysis

498

Amino Acids

57.21

Weight (kDa)

4.93

Isoelectric Point (pI)

61.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017660)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g33220
malus_domestica MD13G1017400.v1.1 MD16G1015500.v1.1
prunus_persica Prupe.1G336100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0442371
rosa_laevigata RLG00000006015
rosa_multiflora Rmu_co8473163.1_g000001 Rmu_sc0000124.1_g000044
rosa_rugosa Rorug04G0340600
rosa_samantha Rh4BG405900 Rh4CG421000 Rh4DG399000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 250, 842
AclWI GGATC 4 cut(s) 336, 420, 1107, 1345
AcsI RAATTY 4 cut(s) 203, 948, 964, 1420
AcuI CTGAAG 2 cut(s) 324, 423
AcyI GRCGYC 1 cut(s) 398
AfaI GTAC 1 cut(s) 1061
AfiI CCNNNNNNNGG 2 cut(s) 435, 658
AflIII ACRYGT 1 cut(s) 1278
AgsI TTSAA 7 cut(s) 98, 169, 620, 947, 1077, 1226, 1318
AleI CACNNNNGTG 2 cut(s) 262, 378
Alw21I GWGCWC 3 cut(s) 45, 165, 330
Alw26I GTCTC 1 cut(s) 363
AlwI GGATC 4 cut(s) 336, 420, 1107, 1345
AlwNI CAGNNNCTG 1 cut(s) 125
Ama87I CYCGRG 1 cut(s) 959
AoxI GGCC 2 cut(s) 349, 1456
ApeKI GCWGC 6 cut(s) 243, 634, 680, 683, 985, 1292
ApoI RAATTY 4 cut(s) 203, 948, 964, 1420
AseI ATTAAT 2 cut(s) 1092, 1175
Asp700I GAANNNNTTC 3 cut(s) 173, 453, 692
AspS9I GGNCC 1 cut(s) 1369
AsuHPI GGTGA 2 cut(s) 1011, 1275
AvaI CYCGRG 1 cut(s) 959
AvaII GGWCC 1 cut(s) 1369
BanII GRGCYC 2 cut(s) 165, 330
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 3 cut(s) 45, 165, 330
BbvI GCAGC 6 cut(s) 230, 621, 692, 695, 997, 1279
BccI CCATC 3 cut(s) 188, 196, 1051
BceAI ACGGC 2 cut(s) 210, 651
BcoDI GTCTC 1 cut(s) 363
BfaI CTAG 3 cut(s) 1065, 1262, 1484
BfmI CTRYAG 1 cut(s) 117
BglI GCCNNNNNGGC 1 cut(s) 231
BisI GCNGC 7 cut(s) 244, 635, 681, 684, 843, 986, 1293
BlsI GCNGC 7 cut(s) 245, 636, 682, 685, 844, 987, 1294
BmcAI AGTACT 1 cut(s) 1061
Bme18I GGWCC 1 cut(s) 1369
BmeT110I CYCGRG 1 cut(s) 959
BmgT120I GGNCC 1 cut(s) 1369
BmiI GGNNCC 1 cut(s) 440
BmsI GCATC 4 cut(s) 786, 1043, 1381, 1392
BoxI GACNNNNGTC 1 cut(s) 666
BpiI GAAGAC 1 cut(s) 312
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpuEI CTTGAG 1 cut(s) 245
BsaHI GRCGYC 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 393
BsaWI WCCGGW 1 cut(s) 318
Bsc4I CCNNNNNNNGG 2 cut(s) 435, 658
Bse1I ACTGG 2 cut(s) 313, 703
Bse3DI GCAATG 4 cut(s) 97, 137, 457, 897
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 2 cut(s) 389, 1396
BseLI CCNNNNNNNGG 2 cut(s) 435, 658
BseMI GCAATG 4 cut(s) 97, 137, 457, 897
BseMII CTCAG 3 cut(s) 226, 315, 376
BseNI ACTGG 2 cut(s) 313, 703
BseRI GAGGAG 4 cut(s) 266, 1178, 1217, 1256
BseXI GCAGC 6 cut(s) 230, 621, 692, 695, 997, 1279
BseYI CCCAGC 1 cut(s) 1248
BsgI GTGCAG 1 cut(s) 10
BshFI GGCC 2 cut(s) 351, 1458
BsiHKAI GWGCWC 3 cut(s) 45, 165, 330
BsiHKCI CYCGRG 1 cut(s) 959
BsiSI CCGG 2 cut(s) 319, 1289
BslFI GGGAC 1 cut(s) 654
BslI CCNNNNNNNGG 2 cut(s) 435, 658
BsmAI GTCTC 1 cut(s) 363
BsmFI GGGAC 1 cut(s) 654
BsmI GAATGC 1 cut(s) 618
BsnI GGCC 2 cut(s) 351, 1458
BsoBI CYCGRG 1 cut(s) 959
Bsp1286I GDGCHC 3 cut(s) 45, 165, 330
Bsp143I GATC 6 cut(s) 341, 425, 928, 1099, 1337, 1381
BspACI CCGC 2 cut(s) 250, 842
BspANI GGCC 2 cut(s) 351, 1458
BspCNI CTCAG 3 cut(s) 225, 316, 375
BspLI GGNNCC 1 cut(s) 440
BspPI GGATC 4 cut(s) 336, 420, 1107, 1345
BspQI GCTCTTC 1 cut(s) 459
BsrDI GCAATG 4 cut(s) 97, 137, 457, 897
BsrI ACTGG 2 cut(s) 313, 703
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 6 cut(s) 341, 425, 928, 1099, 1337, 1381
BssNI GRCGYC 1 cut(s) 398
Bst4CI ACNGT 3 cut(s) 76, 284, 509
Bst6I CTCTTC 2 cut(s) 459, 1006
BstACI GRCGYC 1 cut(s) 398
BstC8I GCNNGC 3 cut(s) 248, 479, 483
BstDEI CTNAG 4 cut(s) 35, 212, 324, 362
BstF5I GGATG 2 cut(s) 389, 1396
BstKTI GATC 6 cut(s) 344, 428, 931, 1102, 1340, 1384
BstMAI GTCTC 1 cut(s) 363
BstMBI GATC 6 cut(s) 341, 425, 928, 1099, 1337, 1381
BstNSI RCATGY 2 cut(s) 982, 1282
BstPAI GACNNNNGTC 1 cut(s) 666
BstSFI CTRYAG 1 cut(s) 117
BstV1I GCAGC 6 cut(s) 230, 621, 692, 695, 997, 1279
BstV2I GAAGAC 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 425
BstYI RGATCY 1 cut(s) 425
BsuRI GGCC 2 cut(s) 351, 1458
BtsCI GGATG 2 cut(s) 389, 1396
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 5 cut(s) 27, 72, 374, 505, 1044
Cac8I GCNNGC 3 cut(s) 248, 479, 483
CaiI CAGNNNCTG 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 1369
CseI GACGC 1 cut(s) 387
Csp6I GTAC 1 cut(s) 1060
CviAII CATG 6 cut(s) 658, 953, 979, 1279, 1376, 1395
CviQI GTAC 1 cut(s) 1060
DdeI CTNAG 4 cut(s) 35, 212, 324, 362
DpnI GATC 6 cut(s) 343, 427, 930, 1101, 1339, 1383
DpnII GATC 6 cut(s) 341, 425, 928, 1099, 1337, 1381
Eam1104I CTCTTC 2 cut(s) 459, 1006
EarI CTCTTC 2 cut(s) 459, 1006
Ecl136II GAGCTC 2 cut(s) 163, 328
Eco24I GRGCYC 2 cut(s) 165, 330
Eco47I GGWCC 1 cut(s) 1369
Eco53kI GAGCTC 2 cut(s) 163, 328
Eco57I CTGAAG 2 cut(s) 324, 423
Eco88I CYCGRG 1 cut(s) 959
EcoICRI GAGCTC 2 cut(s) 163, 328
EcoT22I ATGCAT 1 cut(s) 1396
EcoT38I GRGCYC 2 cut(s) 165, 330
FaeI CATG 6 cut(s) 661, 956, 982, 1282, 1379, 1398
FaqI GGGAC 1 cut(s) 654
FatI CATG 6 cut(s) 657, 952, 978, 1278, 1375, 1394
FauI CCCGC 1 cut(s) 243
FauNDI CATATG 2 cut(s) 910, 1342
Fnu4HI GCNGC 7 cut(s) 244, 635, 681, 684, 843, 986, 1293
FokI GGATG 2 cut(s) 376, 1403
FriOI GRGCYC 2 cut(s) 165, 330
Fsp4HI GCNGC 7 cut(s) 244, 635, 681, 684, 843, 986, 1293
FspBI CTAG 3 cut(s) 1065, 1262, 1484
GluI GCNGC 7 cut(s) 244, 635, 681, 684, 843, 986, 1293
GsaI CCCAGC 1 cut(s) 1252
HaeIII GGCC 2 cut(s) 351, 1458
HapII CCGG 2 cut(s) 319, 1289
HgaI GACGC 1 cut(s) 387
Hin1I GRCGYC 1 cut(s) 398
Hin1II CATG 6 cut(s) 661, 956, 982, 1282, 1379, 1398
HindIII AAGCTT 2 cut(s) 690, 1266
HinfI GANTC 4 cut(s) 238, 386, 995, 1216
HpaII CCGG 2 cut(s) 319, 1289
HphI GGTGA 2 cut(s) 1011, 1275
Hpy188I TCNGA 4 cut(s) 325, 403, 759, 795
Hpy188III TCNNGA 8 cut(s) 125, 158, 166, 512, 779, 959, 961, 1262
Hpy99I CGWCG 3 cut(s) 1058, 1120, 1241
HpyAV CCTTC 4 cut(s) 560, 832, 931, 1268
HpyCH4III ACNGT 3 cut(s) 76, 284, 509
HpyCH4IV ACGT 1 cut(s) 1365
HpyCH4V TGCA 9 cut(s) 4, 27, 90, 257, 521, 637, 813, 1394, 1405
HpyF3I CTNAG 4 cut(s) 35, 212, 324, 362
HpySE526I ACGT 1 cut(s) 1365
Hsp92I GRCGYC 1 cut(s) 398
Hsp92II CATG 6 cut(s) 661, 956, 982, 1282, 1379, 1398
Kzo9I GATC 6 cut(s) 341, 425, 928, 1099, 1337, 1381
LguI GCTCTTC 1 cut(s) 459
LmnI GCTCC 6 cut(s) 127, 160, 333, 444, 677, 905
Lsp1109I GCAGC 6 cut(s) 230, 621, 692, 695, 997, 1279
LweI GCATC 4 cut(s) 786, 1043, 1381, 1392
MaeI CTAG 3 cut(s) 1065, 1262, 1484
MaeII ACGT 1 cut(s) 1365
MaeIII GTNAC 3 cut(s) 371, 1111, 1281
MalI GATC 6 cut(s) 343, 427, 930, 1101, 1339, 1383
MboI GATC 6 cut(s) 341, 425, 928, 1099, 1337, 1381
MflI RGATCY 1 cut(s) 425
MhlI GDGCHC 3 cut(s) 45, 165, 330
MluCI AATT 9 cut(s) 203, 572, 765, 948, 964, 1137, 1176, 1354, 1420
MlyI GAGTC 2 cut(s) 232, 1004
MmeI TCCRAC 3 cut(s) 58, 450, 1396
Mph1103I ATGCAT 1 cut(s) 1396
MroXI GAANNNNTTC 3 cut(s) 173, 453, 692
MseI TTAA 5 cut(s) 1092, 1136, 1175, 1275, 1428
MslI CAYNNNNRTG 3 cut(s) 262, 378, 1277
MspA1I CMGCKG 2 cut(s) 634, 988
MspI CCGG 2 cut(s) 319, 1289
Mva1269I GAATGC 1 cut(s) 618
NdeI CATATG 2 cut(s) 910, 1342
NdeII GATC 6 cut(s) 341, 425, 928, 1099, 1337, 1381
NlaIII CATG 6 cut(s) 661, 956, 982, 1282, 1379, 1398
NlaIV GGNNCC 1 cut(s) 440
NmeAIII GCCGAG 2 cut(s) 374, 415
NmuCI GTSAC 2 cut(s) 371, 1281
NsiI ATGCAT 1 cut(s) 1396
NspI RCATGY 2 cut(s) 982, 1282
OliI CACNNNNGTG 2 cut(s) 262, 378
PaeR7I CTCGAG 1 cut(s) 959
PciI ACATGT 1 cut(s) 1278
PciSI GCTCTTC 1 cut(s) 459
PctI GAATGC 1 cut(s) 618
PdmI GAANNNNTTC 3 cut(s) 173, 453, 692
PfeI GAWTC 2 cut(s) 386, 1216
PflFI GACNNNGTC 2 cut(s) 653, 994
PkrI GCNGC 7 cut(s) 245, 636, 682, 685, 844, 987, 1294
PleI GAGTC 2 cut(s) 232, 1003
PpsI GAGTC 2 cut(s) 232, 1003
PscI ACATGT 1 cut(s) 1278
PshAI GACNNNNGTC 1 cut(s) 666
PshBI ATTAAT 2 cut(s) 1092, 1175
Psp124BI GAGCTC 2 cut(s) 165, 330
PspFI CCCAGC 1 cut(s) 1248
PspN4I GGNNCC 1 cut(s) 440
PspPI GGNCC 1 cut(s) 1369
PstNI CAGNNNCTG 1 cut(s) 125
PsuI RGATCY 1 cut(s) 425
PsyI GACNNNGTC 2 cut(s) 653, 994
PvuII CAGCTG 2 cut(s) 634, 988
RsaI GTAC 1 cut(s) 1061
RsaNI GTAC 1 cut(s) 1060
RseI CAYNNNNRTG 3 cut(s) 262, 378, 1277
SacI GAGCTC 2 cut(s) 165, 330
SapI GCTCTTC 1 cut(s) 459
SaqAI TTAA 5 cut(s) 1092, 1136, 1175, 1275, 1428
SatI GCNGC 7 cut(s) 244, 635, 681, 684, 843, 986, 1293
Sau3AI GATC 6 cut(s) 341, 425, 928, 1099, 1337, 1381
Sau96I GGNCC 1 cut(s) 1369
ScaI AGTACT 1 cut(s) 1061
SchI GAGTC 2 cut(s) 232, 1004
SduI GDGCHC 3 cut(s) 45, 165, 330
SfaNI GCATC 4 cut(s) 786, 1043, 1381, 1392
SfcI CTRYAG 1 cut(s) 117
Sfr274I CTCGAG 1 cut(s) 959
SinI GGWCC 1 cut(s) 1369
SlaI CTCGAG 1 cut(s) 959
SmiMI CAYNNNNRTG 3 cut(s) 262, 378, 1277
SmlI CTYRAG 2 cut(s) 260, 959
SmoI CTYRAG 2 cut(s) 260, 959
Sse9I AATT 9 cut(s) 203, 572, 765, 948, 964, 1137, 1176, 1354, 1420
SsiI CCGC 2 cut(s) 250, 842
SspMI CTAG 3 cut(s) 1065, 1262, 1484
SstI GAGCTC 2 cut(s) 165, 330
TaaI ACNGT 3 cut(s) 76, 284, 509
TaiI ACGT 1 cut(s) 1368
TaqI TCGA 4 cut(s) 610, 960, 1056, 1070
TasI AATT 9 cut(s) 203, 572, 765, 948, 964, 1137, 1176, 1354, 1420
TatI WGTACW 1 cut(s) 1059
TauI GCSGC 1 cut(s) 845
TfiI GAWTC 2 cut(s) 386, 1216
Tru1I TTAA 5 cut(s) 1092, 1136, 1175, 1275, 1428
Tru9I TTAA 5 cut(s) 1092, 1136, 1175, 1275, 1428
TscAI CASTG 5 cut(s) 34, 79, 374, 512, 1044
TseFI GTSAC 2 cut(s) 371, 1281
TseI GCWGC 6 cut(s) 243, 634, 680, 683, 985, 1292
Tsp45I GTSAC 2 cut(s) 371, 1281
TspDTI ATGAA 8 cut(s) 183, 378, 446, 728, 913, 927, 941, 1017
TspGWI ACGGA 2 cut(s) 368, 1007
TspRI CASTG 5 cut(s) 34, 79, 374, 512, 1044
Tth111I GACNNNGTC 2 cut(s) 653, 994
VpaK11BI GGWCC 1 cut(s) 1369
VspI ATTAAT 2 cut(s) 1092, 1175
XapI RAATTY 4 cut(s) 203, 948, 964, 1420
XbaI TCTAGA 1 cut(s) 1261
XceI RCATGY 2 cut(s) 982, 1282
XhoI CTCGAG 1 cut(s) 959
XmnI GAANNNNTTC 3 cut(s) 173, 453, 692
XspI CTAG 3 cut(s) 1065, 1262, 1484
ZrmI AGTACT 1 cut(s) 1061
Zsp2I ATGCAT 1 cut(s) 1396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.