RLG00000006015

Clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0017660
Physical Location & Seq
Reverse (-)
3529688 .. 3532375
2688 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006015

Sequence Viewer

Length: 1356 bp
ATGCAGAGGCGATTCCGGCAAGTCTTCACCGCTCTAAAAGAGCACAGCTCCGTGAGCTACGCCAAGATCGCCACGGTTGGAGGGTTCTGCAACGTGGAGTTCATCATCATAAAAGCAACAGCTCCGGATGACTTGCCGTTGCCGGAAAAGTACATTCAAGAGCTCTTGAAAATCTTCTCCATCTCTCCATCCACCCTGAGTGCCTTCTCACTCAGCTTCTCTCGCCGCTTCGGCAAGACTCGATGCTGGAGAGTTGCACTCAAGTGCTTGATCCTCCTCCACCGTCTGCTTCGTGCAGTCCCCGACGACAGTGCGTTTAGGAGTGAGCTGCTTTGGACACGTTCAATTGGCTTGCTGTCCCTCAACGACTGTCGCTTCCGTGACGATTCCTCCTCGGCTTCGGCAGACTACACAGCCTTTGTCAGATCCTATGCCCAGCTCCTCGACGAAGCTCTTCATTGCTTTTGCTTGGATAACGAGGCACCCGAAGAACCACAAAAACAATATCAAGAGGAAGGAGAAGAAGGAGAAGGAGAAGATGAACAAGAGGAAGAAGATGATGAACCGCAATTTCAGAGCTTATCAACCAAAATGGAAGAAATTAGTCGAATGCTTGAAATGTTGCCGCAGCTACAAAGCCTAATTGATCGAGTAATGGACTGCCGGCCAACTGGGCCGGCAGCTAAAAGCTTCTTAGTCCAAATGGCCATGAAACTTCTAATTCGAGACAGCTTTGTGTGTTACACAATCTTTAGGAGGGAAATTGTTATGGTTCTTGATAGCCTCTTTCAGATGCCTTATCGGAATTGCATATCAGCTTTTGGGATTTACAAGAAGGCAGCAGTGCAAGCAAATGACCTTTGTGAATTCTACGACTGGTGTAAGGCAATGGGATTGTGTGGTGCATATGAGTATCCATTTATCGATCGAATCCCACATATTCAAATCCATGCTCTAGAGAACTTCCTCCATGGAATGTGGCAGTTGACAGATCAGTCCTCTTCCACGCCGACCTCATCGTCATCCTCTTCTTTGGTGGAGTGCTCTAGTGAAACTGTAACGGAGGACGACAGCATTCTTGTTAGTACAAAAAAGGAGAAGCCATTGATTCAGTTCGGTGGGGATCACGAGAAGGTAAAGCCCTTAATTCTGTTTGGGAAAGATGAGGAGGAGAAGATGTTGATTCAGTTTGAAGAAGTGGAGGAGAGCTGGGAGAGCATTCTTGACGCTTCCATCAATGTCTCACCTTCTCATCAACAAAACAATATGTTGTGTTTGTACAATCCGAACGTCGTTAATCCTTTCTATCACCATGGATTTGTTACCACCAACAACGCCATTCCTTCCTTAATCTAG

Protein Analysis

452

Amino Acids

51.48

Weight (kDa)

4.9

Isoelectric Point (pI)

57.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 35 - 324 6.4e-49 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017660)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g33220
malus_domestica MD13G1017400.v1.1 MD16G1015500.v1.1
prunus_persica Prupe.1G336100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0442371
rosa_laevigata RLG00000006015
rosa_multiflora Rmu_co8473163.1_g000001 Rmu_sc0000124.1_g000044
rosa_rugosa Rorug04G0340600
rosa_samantha Rh4BG405900 Rh4CG421000 Rh4DG399000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 994, 1018
AccB1I GGYRCC 1 cut(s) 481
AccBSI CCGCTC 1 cut(s) 32
AccIII TCCGGA 1 cut(s) 124
AciI CCGC 4 cut(s) 30, 226, 566, 626
AclWI GGATC 3 cut(s) 265, 420, 1131
AcoI YGGCCR 2 cut(s) 665, 705
AcsI RAATTY 1 cut(s) 866
AfaI GTAC 3 cut(s) 152, 1087, 1280
AflIII ACRYGT 1 cut(s) 338
AgsI TTSAA 6 cut(s) 158, 169, 345, 617, 944, 1193
AleI CACNNNNGTG 1 cut(s) 262
Alw21I GWGCWC 3 cut(s) 45, 165, 1046
Alw26I GTCTC 2 cut(s) 720, 1246
AlwI GGATC 3 cut(s) 265, 420, 1131
Aor13HI TCCGGA 1 cut(s) 124
AoxI GGCC 3 cut(s) 665, 674, 705
ApeKI GCWGC 4 cut(s) 328, 628, 680, 839
ApoI RAATTY 1 cut(s) 866
Asp700I GAANNNNTTC 2 cut(s) 173, 453
AspS9I GGNCC 1 cut(s) 674
AsuHPI GGTGA 3 cut(s) 19, 1236, 1301
BalI TGGCCA 1 cut(s) 707
BanI GGYRCC 1 cut(s) 481
BanII GRGCYC 1 cut(s) 165
BauI CACGAG 1 cut(s) 1127
BbsI GAAGAC 1 cut(s) 16
Bbv12I GWGCWC 3 cut(s) 45, 165, 1046
BbvI GCAGC 4 cut(s) 315, 640, 692, 851
BccI CCATC 3 cut(s) 188, 196, 1241
BceAI ACGGC 1 cut(s) 121
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BciVI GTATCC 1 cut(s) 924
BcoDI GTCTC 2 cut(s) 720, 1246
BfaI CTAG 3 cut(s) 956, 1047, 1354
BfuI GTATCC 1 cut(s) 924
BglI GCCNNNNNGGC 2 cut(s) 231, 673
BisI GCNGC 6 cut(s) 226, 329, 626, 629, 681, 840
BlsI GCNGC 6 cut(s) 227, 330, 627, 630, 682, 841
BmgT120I GGNCC 1 cut(s) 674
BmiI GGNNCC 1 cut(s) 483
BmrI ACTGGG 1 cut(s) 681
BmsI GCATC 2 cut(s) 233, 783
BmuI ACTGGG 1 cut(s) 681
BpiI GAAGAC 1 cut(s) 16
BplI GAGNNNNNCTC 4 cut(s) 32, 64, 243, 275
BpmI CTGGAG 1 cut(s) 268
BpuEI CTTGAG 1 cut(s) 245
Bsa29I ATCGAT 1 cut(s) 924
BsaJI CCNNGG 4 cut(s) 72, 393, 970, 1312
BsaWI WCCGGW 1 cut(s) 124
BsaXI ACNNNNNCTCC 4 cut(s) 374, 404, 1163, 1193
Bse118I RCCGGY 2 cut(s) 663, 676
Bse1I ACTGG 2 cut(s) 676, 881
Bse3DI GCAATG 2 cut(s) 457, 894
BseAI TCCGGA 1 cut(s) 124
BseCI ATCGAT 1 cut(s) 924
BseDI CCNNGG 4 cut(s) 72, 393, 970, 1312
BseGI GGATG 3 cut(s) 133, 188, 1022
BseMI GCAATG 2 cut(s) 457, 894
BseMII CTCAG 2 cut(s) 188, 226
BseNI ACTGG 2 cut(s) 676, 881
BseRI GAGGAG 6 cut(s) 266, 382, 431, 1181, 1184, 1217
BseXI GCAGC 4 cut(s) 315, 640, 692, 851
BseYI CCCAGC 2 cut(s) 435, 1209
BsgI GTGCAG 1 cut(s) 315
Bsh1285I CGRYCG 1 cut(s) 928
BshFI GGCC 3 cut(s) 667, 676, 707
BshNI GGYRCC 1 cut(s) 481
BshVI ATCGAT 1 cut(s) 924
BsiEI CGRYCG 1 cut(s) 928
BsiHKAI GWGCWC 3 cut(s) 45, 165, 1046
BsiSI CCGG 5 cut(s) 16, 125, 143, 664, 677
BslFI GGGAC 2 cut(s) 284, 343
BsmAI GTCTC 2 cut(s) 720, 1246
BsmFI GGGAC 2 cut(s) 284, 343
BsmI GAATGC 3 cut(s) 615, 1074, 1218
BsnI GGCC 3 cut(s) 667, 676, 707
Bsp1286I GDGCHC 3 cut(s) 45, 165, 1046
Bsp13I TCCGGA 1 cut(s) 124
Bsp1407I TGTACA 1 cut(s) 1278
Bsp143I GATC 7 cut(s) 66, 270, 425, 646, 925, 991, 1123
Bsp19I CCATGG 2 cut(s) 970, 1312
BspACI CCGC 4 cut(s) 30, 226, 566, 626
BspANI GGCC 3 cut(s) 667, 676, 707
BspCNI CTCAG 2 cut(s) 189, 225
BspDI ATCGAT 1 cut(s) 924
BspEI TCCGGA 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 483
BspPI GGATC 3 cut(s) 265, 420, 1131
BspQI GCTCTTC 1 cut(s) 459
BspT107I GGYRCC 1 cut(s) 481
BsrBI CCGCTC 1 cut(s) 32
BsrDI GCAATG 2 cut(s) 457, 894
BsrFI RCCGGY 2 cut(s) 663, 676
BsrGI TGTACA 1 cut(s) 1278
BsrI ACTGG 2 cut(s) 676, 881
BssAI RCCGGY 2 cut(s) 663, 676
BssECI CCNNGG 4 cut(s) 72, 393, 970, 1312
BssMI GATC 7 cut(s) 66, 270, 425, 646, 925, 991, 1123
BssSI CACGAG 1 cut(s) 1127
BssT1I CCWWGG 2 cut(s) 970, 1312
Bst2BI CACGAG 1 cut(s) 1127
Bst4CI ACNGT 5 cut(s) 76, 284, 311, 371, 1057
Bst6I CTCTTC 3 cut(s) 459, 1006, 1033
BstAUI TGTACA 1 cut(s) 1278
BstC8I GCNNGC 4 cut(s) 353, 665, 678, 849
BstDEI CTNAG 3 cut(s) 197, 212, 694
BstDSI CCRYGG 3 cut(s) 72, 970, 1312
BstF5I GGATG 3 cut(s) 133, 188, 1022
BstKTI GATC 7 cut(s) 69, 273, 428, 649, 928, 994, 1126
BstMAI GTCTC 2 cut(s) 720, 1246
BstMBI GATC 7 cut(s) 66, 270, 425, 646, 925, 991, 1123
BstMCI CGRYCG 1 cut(s) 928
BstMWI GCNNNNNNNGC 8 cut(s) 16, 54, 68, 222, 231, 673, 848, 1215
BstV1I GCAGC 4 cut(s) 315, 640, 692, 851
BstV2I GAAGAC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 425
BstYI RGATCY 1 cut(s) 425
Bsu15I ATCGAT 1 cut(s) 924
BsuI GTATCC 1 cut(s) 924
BsuRI GGCC 3 cut(s) 667, 676, 707
BsuTUI ATCGAT 1 cut(s) 924
BtgI CCRYGG 3 cut(s) 72, 970, 1312
BtsCI GGATG 3 cut(s) 133, 188, 1022
BtsI GCAGTG 1 cut(s) 849
BtsIMutI CAGTG 2 cut(s) 316, 849
Cac8I GCNNGC 4 cut(s) 353, 665, 678, 849
Cfr10I RCCGGY 2 cut(s) 663, 676
Cfr13I GGNCC 1 cut(s) 674
ClaI ATCGAT 1 cut(s) 924
CseI GACGC 1 cut(s) 1235
Csp6I GTAC 3 cut(s) 151, 1086, 1279
CviAII CATG 4 cut(s) 709, 950, 971, 1313
CviQI GTAC 3 cut(s) 151, 1086, 1279
DdeI CTNAG 3 cut(s) 197, 212, 694
DpnI GATC 7 cut(s) 68, 272, 427, 648, 927, 993, 1125
DpnII GATC 7 cut(s) 66, 270, 425, 646, 925, 991, 1123
DrdI GACNNNNNNGTC 2 cut(s) 994, 1018
DseDI GACNNNNNNGTC 2 cut(s) 994, 1018
EaeI YGGCCR 2 cut(s) 665, 705
Eam1104I CTCTTC 3 cut(s) 459, 1006, 1033
EarI CTCTTC 3 cut(s) 459, 1006, 1033
Ecl136II GAGCTC 1 cut(s) 163
Eco130I CCWWGG 2 cut(s) 970, 1312
Eco24I GRGCYC 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 163
EcoRI GAATTC 1 cut(s) 866
EcoT14I CCWWGG 2 cut(s) 970, 1312
EcoT38I GRGCYC 1 cut(s) 165
ErhI CCWWGG 2 cut(s) 970, 1312
FaeI CATG 4 cut(s) 712, 953, 974, 1316
FaqI GGGAC 2 cut(s) 284, 343
FatI CATG 4 cut(s) 708, 949, 970, 1312
FauNDI CATATG 1 cut(s) 907
Fnu4HI GCNGC 6 cut(s) 226, 329, 626, 629, 681, 840
FokI GGATG 3 cut(s) 140, 175, 1009
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 6 cut(s) 226, 329, 626, 629, 681, 840
FspBI CTAG 3 cut(s) 956, 1047, 1354
GluI GCNGC 6 cut(s) 226, 329, 626, 629, 681, 840
GsaI CCCAGC 2 cut(s) 439, 1213
GsuI CTGGAG 1 cut(s) 268
HaeIII GGCC 3 cut(s) 667, 676, 707
HapII CCGG 5 cut(s) 16, 125, 143, 664, 677
HgaI GACGC 1 cut(s) 1235
Hin1II CATG 4 cut(s) 712, 953, 974, 1316
HincII GTYRAC 1 cut(s) 987
HindII GTYRAC 1 cut(s) 987
HindIII AAGCTT 1 cut(s) 688
HinfI GANTC 6 cut(s) 12, 238, 386, 930, 1108, 1183
HpaII CCGG 5 cut(s) 16, 125, 143, 664, 677
HphI GGTGA 3 cut(s) 19, 1236, 1301
Hpy166II GTNNAC 1 cut(s) 987
Hpy188I TCNGA 5 cut(s) 425, 576, 792, 804, 1287
Hpy188III TCNNGA 9 cut(s) 125, 158, 166, 509, 725, 776, 956, 1127, 1223
Hpy8I GTNNAC 1 cut(s) 987
Hpy99I CGWCG 3 cut(s) 308, 449, 1295
HpyAV CCTTC 8 cut(s) 214, 509, 518, 524, 829, 1126, 1257, 1353
HpyCH4III ACNGT 5 cut(s) 76, 284, 311, 371, 1057
HpyCH4IV ACGT 3 cut(s) 93, 340, 1290
HpyCH4V TGCA 7 cut(s) 4, 90, 257, 296, 810, 847, 905
HpyF10VI GCNNNNNNNGC 8 cut(s) 16, 54, 68, 222, 231, 673, 848, 1215
HpyF3I CTNAG 3 cut(s) 197, 212, 694
HpySE526I ACGT 3 cut(s) 93, 340, 1290
Hsp92II CATG 4 cut(s) 712, 953, 974, 1316
Kpn2I TCCGGA 1 cut(s) 124
KroI GCCGGC 2 cut(s) 663, 676
KroNI GCCGGC 2 cut(s) 665, 678
Kzo9I GATC 7 cut(s) 66, 270, 425, 646, 925, 991, 1123
LguI GCTCTTC 1 cut(s) 459
LmnI GCTCC 3 cut(s) 53, 127, 444
Lsp1109I GCAGC 4 cut(s) 315, 640, 692, 851
LweI GCATC 2 cut(s) 233, 783
MaeI CTAG 3 cut(s) 956, 1047, 1354
MaeII ACGT 3 cut(s) 93, 340, 1290
MaeIII GTNAC 4 cut(s) 380, 740, 1057, 1321
MalI GATC 7 cut(s) 68, 272, 427, 648, 927, 993, 1125
MbiI CCGCTC 1 cut(s) 32
MboI GATC 7 cut(s) 66, 270, 425, 646, 925, 991, 1123
MfeI CAATTG 1 cut(s) 345
MflI RGATCY 1 cut(s) 425
MhlI GDGCHC 3 cut(s) 45, 165, 1046
MlsI TGGCCA 1 cut(s) 707
MluCI AATT 9 cut(s) 345, 569, 600, 642, 720, 762, 805, 866, 1146
MluNI TGGCCA 1 cut(s) 707
MlyI GAGTC 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 58
Mox20I TGGCCA 1 cut(s) 707
MroI TCCGGA 1 cut(s) 124
MroNI GCCGGC 2 cut(s) 663, 676
MroXI GAANNNNTTC 2 cut(s) 173, 453
MscI TGGCCA 1 cut(s) 707
MseI TTAA 3 cut(s) 1145, 1296, 1349
MslI CAYNNNNRTG 1 cut(s) 262
Msp20I TGGCCA 1 cut(s) 707
MspI CCGG 5 cut(s) 16, 125, 143, 664, 677
MunI CAATTG 1 cut(s) 345
Mva1269I GAATGC 3 cut(s) 615, 1074, 1218
MwoI GCNNNNNNNGC 8 cut(s) 16, 54, 68, 222, 231, 673, 848, 1215
NaeI GCCGGC 2 cut(s) 665, 678
NcoI CCATGG 2 cut(s) 970, 1312
NdeI CATATG 1 cut(s) 907
NdeII GATC 7 cut(s) 66, 270, 425, 646, 925, 991, 1123
NgoMIV GCCGGC 2 cut(s) 663, 676
NlaIII CATG 4 cut(s) 712, 953, 974, 1316
NlaIV GGNNCC 1 cut(s) 483
NmeAIII GCCGAG 1 cut(s) 374
NmuCI GTSAC 1 cut(s) 380
OliI CACNNNNGTG 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 459
PcsI WCGNNNNNNNCGW 1 cut(s) 483
PctI GAATGC 3 cut(s) 615, 1074, 1218
PdiI GCCGGC 2 cut(s) 665, 678
PdmI GAANNNNTTC 2 cut(s) 173, 453
PfeI GAWTC 5 cut(s) 12, 386, 930, 1108, 1183
PkrI GCNGC 6 cut(s) 227, 330, 627, 630, 682, 841
Ple19I CGATCG 1 cut(s) 928
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
Psp124BI GAGCTC 1 cut(s) 165
PspFI CCCAGC 2 cut(s) 435, 1209
PspN4I GGNNCC 1 cut(s) 483
PspPI GGNCC 1 cut(s) 674
PsuI RGATCY 1 cut(s) 425
PvuI CGATCG 1 cut(s) 928
RsaI GTAC 3 cut(s) 152, 1087, 1280
RsaNI GTAC 3 cut(s) 151, 1086, 1279
RseI CAYNNNNRTG 1 cut(s) 262
SacI GAGCTC 1 cut(s) 165
SapI GCTCTTC 1 cut(s) 459
SaqAI TTAA 3 cut(s) 1145, 1296, 1349
SatI GCNGC 6 cut(s) 226, 329, 626, 629, 681, 840
Sau3AI GATC 7 cut(s) 66, 270, 425, 646, 925, 991, 1123
Sau96I GGNCC 1 cut(s) 674
SchI GAGTC 1 cut(s) 232
SduI GDGCHC 3 cut(s) 45, 165, 1046
SfaNI GCATC 2 cut(s) 233, 783
SfiI GGCCNNNNNGGCC 1 cut(s) 673
SmiMI CAYNNNNRTG 1 cut(s) 262
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 9 cut(s) 345, 569, 600, 642, 720, 762, 805, 866, 1146
SsiI CCGC 4 cut(s) 30, 226, 566, 626
SspMI CTAG 3 cut(s) 956, 1047, 1354
SstI GAGCTC 1 cut(s) 165
StyI CCWWGG 2 cut(s) 970, 1312
TaaI ACNGT 5 cut(s) 76, 284, 311, 371, 1057
TaiI ACGT 3 cut(s) 96, 343, 1293
TaqI TCGA 7 cut(s) 241, 444, 607, 649, 724, 924, 928
TasI AATT 9 cut(s) 345, 569, 600, 642, 720, 762, 805, 866, 1146
TatI WGTACW 3 cut(s) 150, 1085, 1278
TauI GCSGC 2 cut(s) 228, 628
TfiI GAWTC 5 cut(s) 12, 386, 930, 1108, 1183
Tru1I TTAA 3 cut(s) 1145, 1296, 1349
Tru9I TTAA 3 cut(s) 1145, 1296, 1349
TscAI CASTG 2 cut(s) 316, 849
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 4 cut(s) 328, 628, 680, 839
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 5 cut(s) 91, 446, 555, 576, 725
TspGWI ACGGA 3 cut(s) 40, 368, 1076
TspRI CASTG 2 cut(s) 316, 849
XapI RAATTY 1 cut(s) 866
XbaI TCTAGA 1 cut(s) 955
XmnI GAANNNNTTC 2 cut(s) 173, 453
XspI CTAG 3 cut(s) 956, 1047, 1354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.