Rh4BG405900

Clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0017660
Physical Location & Seq
Forward (+)
55588901 .. 55589725
825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG405900.1

Sequence Viewer

Length: 765 bp
ATGGAAGAAATTAGTCGAATGCTTGAAATGTTGCCTCAGCTACAAAGTCTAACTGATCGAGTCATGGACTGCCGGCCAACTGGGCCGGCAGCTAAAAGCTTCTTGGTCCAAATGGCCATGAAACTTCTCATTCGAGACAGCTTTGTGTTTTACACAATCTTTAGGAGGGAAATTGTTATGGTTCTTGATAGCCTCTTTCAGATGCCTTATCGGAATTGCATATCAGCTTTTGGGATTTACAAGAAGGCAGCAGTGCAAGCAAATGACCTTTGTGAATTCTACGACTGGTGTAAGGCAATGGGATTGTGTGGTGCATATGAGTATCCATTTATCGATCGAATCCCACATATTCAAATCCATGCTCTAGAGAACTTCCTCCATGGAATGTGGCAGTTGACAGATCAGTCCTCTTCCACGCCGACCTCATCGTCATCCTCTTCTTTGGTGGAGTGCTCTAGTGAAACTGTAACGGAGGACGACAGCATTCTTGTTAGTACAAAATGGGAGAAGCCATTGATTCAGTTCGGTGGGGATCACGAGAACGAAAAGGCCTTAATTCTGTTTGGGAAAGATGCGGAGGAGAAGATGTTGATTCAGTTTGAAGAAGTGGAGGAGAGCTGGGAGAGCATTCTGGAAGCTTCCATCAATGTCTCACCTTCTTATCAACAAAACAATATGTTGTGCTTGTACAATCCGAACGTCGTTAATCCTTTCTATCACCATGGATTTGTTACCACCAACAACGCCATTCCTTCCTTAATCTAG

Protein Analysis

254

Amino Acids

29.04

Weight (kDa)

4.73

Isoelectric Point (pI)

54.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 4 - 127 1.4e-25 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017660)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g33220
malus_domestica MD13G1017400.v1.1 MD16G1015500.v1.1
prunus_persica Prupe.1G336100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0442371
rosa_laevigata RLG00000006015
rosa_multiflora Rmu_co8473163.1_g000001 Rmu_sc0000124.1_g000044
rosa_rugosa Rorug04G0340600
rosa_samantha Rh4BG405900 Rh4CG421000 Rh4DG399000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 403, 427
AciI CCGC 1 cut(s) 575
AclWI GGATC 1 cut(s) 540
AcoI YGGCCR 2 cut(s) 74, 114
AcsI RAATTY 1 cut(s) 275
AfaI GTAC 2 cut(s) 496, 689
AgsI TTSAA 3 cut(s) 26, 353, 602
AluBI AGCT 7 cut(s) 40, 92, 99, 141, 227, 618, 638
AluI AGCT 7 cut(s) 40, 92, 99, 141, 227, 618, 638
Alw21I GWGCWC 1 cut(s) 455
Alw26I GTCTC 2 cut(s) 129, 655
AlwI GGATC 1 cut(s) 540
AoxI GGCC 4 cut(s) 74, 83, 114, 549
ApeKI GCWGC 2 cut(s) 89, 248
ApoI RAATTY 1 cut(s) 275
AspS9I GGNCC 2 cut(s) 83, 106
AsuHPI GGTGA 2 cut(s) 645, 710
AvaII GGWCC 1 cut(s) 106
BalI TGGCCA 1 cut(s) 116
BauI CACGAG 1 cut(s) 536
Bbv12I GWGCWC 1 cut(s) 455
BbvCI CCTCAGC 1 cut(s) 36
BbvI GCAGC 2 cut(s) 101, 260
BccI CCATC 1 cut(s) 650
BciVI GTATCC 1 cut(s) 333
BcoDI GTCTC 2 cut(s) 129, 655
BfaI CTAG 3 cut(s) 365, 456, 763
BfuI GTATCC 1 cut(s) 333
BglI GCCNNNNNGGC 1 cut(s) 82
BisI GCNGC 2 cut(s) 90, 249
BlsI GCNGC 2 cut(s) 91, 250
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 2 cut(s) 83, 106
BmrI ACTGGG 1 cut(s) 90
BmsI GCATC 2 cut(s) 192, 562
BmuI ACTGGG 1 cut(s) 90
Bpu10I CCTNAGC 1 cut(s) 36
Bsa29I ATCGAT 1 cut(s) 333
BsaJI CCNNGG 2 cut(s) 379, 721
BsaXI ACNNNNNCTCC 2 cut(s) 572, 602
Bse118I RCCGGY 2 cut(s) 72, 85
Bse1I ACTGG 2 cut(s) 85, 290
Bse3DI GCAATG 1 cut(s) 303
BseCI ATCGAT 1 cut(s) 333
BseDI CCNNGG 2 cut(s) 379, 721
BseGI GGATG 1 cut(s) 431
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 1 cut(s) 50
BseNI ACTGG 2 cut(s) 85, 290
BseRI GAGGAG 2 cut(s) 593, 626
BseXI GCAGC 2 cut(s) 101, 260
BseYI CCCAGC 1 cut(s) 618
Bsh1285I CGRYCG 1 cut(s) 337
BshFI GGCC 4 cut(s) 76, 85, 116, 551
BshVI ATCGAT 1 cut(s) 333
BsiEI CGRYCG 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 455
BsiSI CCGG 2 cut(s) 73, 86
BsmAI GTCTC 2 cut(s) 129, 655
BsmI GAATGC 3 cut(s) 24, 483, 627
BsnI GGCC 4 cut(s) 76, 85, 116, 551
Bsp1286I GDGCHC 1 cut(s) 455
Bsp1407I TGTACA 1 cut(s) 687
Bsp143I GATC 4 cut(s) 55, 334, 400, 532
Bsp19I CCATGG 2 cut(s) 379, 721
BspACI CCGC 1 cut(s) 575
BspANI GGCC 4 cut(s) 76, 85, 116, 551
BspCNI CTCAG 1 cut(s) 49
BspDI ATCGAT 1 cut(s) 333
BspPI GGATC 1 cut(s) 540
BsrDI GCAATG 1 cut(s) 303
BsrFI RCCGGY 2 cut(s) 72, 85
BsrGI TGTACA 1 cut(s) 687
BsrI ACTGG 2 cut(s) 85, 290
BssAI RCCGGY 2 cut(s) 72, 85
BssECI CCNNGG 2 cut(s) 379, 721
BssMI GATC 4 cut(s) 55, 334, 400, 532
BssSI CACGAG 1 cut(s) 536
BssT1I CCWWGG 2 cut(s) 379, 721
Bst2BI CACGAG 1 cut(s) 536
Bst4CI ACNGT 1 cut(s) 466
Bst6I CTCTTC 2 cut(s) 415, 442
BstAUI TGTACA 1 cut(s) 687
BstC8I GCNNGC 3 cut(s) 74, 87, 258
BstDEI CTNAG 1 cut(s) 36
BstDSI CCRYGG 2 cut(s) 379, 721
BstF5I GGATG 1 cut(s) 431
BstKTI GATC 4 cut(s) 58, 337, 403, 535
BstMAI GTCTC 2 cut(s) 129, 655
BstMBI GATC 4 cut(s) 55, 334, 400, 532
BstMCI CGRYCG 1 cut(s) 337
BstMWI GCNNNNNNNGC 3 cut(s) 82, 257, 624
BstV1I GCAGC 2 cut(s) 101, 260
Bsu15I ATCGAT 1 cut(s) 333
BsuI GTATCC 1 cut(s) 333
BsuRI GGCC 4 cut(s) 76, 85, 116, 551
BsuTUI ATCGAT 1 cut(s) 333
BtgI CCRYGG 2 cut(s) 379, 721
BtsCI GGATG 1 cut(s) 431
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 3 cut(s) 74, 87, 258
Cfr10I RCCGGY 2 cut(s) 72, 85
Cfr13I GGNCC 2 cut(s) 83, 106
ClaI ATCGAT 1 cut(s) 333
Csp6I GTAC 2 cut(s) 495, 688
CviAII CATG 5 cut(s) 64, 118, 359, 380, 722
CviQI GTAC 2 cut(s) 495, 688
DdeI CTNAG 1 cut(s) 36
DpnI GATC 4 cut(s) 57, 336, 402, 534
DpnII GATC 4 cut(s) 55, 334, 400, 532
DrdI GACNNNNNNGTC 2 cut(s) 403, 427
DseDI GACNNNNNNGTC 2 cut(s) 403, 427
EaeI YGGCCR 2 cut(s) 74, 114
Eam1104I CTCTTC 2 cut(s) 415, 442
EarI CTCTTC 2 cut(s) 415, 442
Eco130I CCWWGG 2 cut(s) 379, 721
Eco147I AGGCCT 1 cut(s) 551
Eco47I GGWCC 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 275
EcoT14I CCWWGG 2 cut(s) 379, 721
ErhI CCWWGG 2 cut(s) 379, 721
FaeI CATG 5 cut(s) 67, 121, 362, 383, 725
FatI CATG 5 cut(s) 63, 117, 358, 379, 721
FauNDI CATATG 1 cut(s) 316
Fnu4HI GCNGC 2 cut(s) 90, 249
FokI GGATG 1 cut(s) 418
Fsp4HI GCNGC 2 cut(s) 90, 249
FspBI CTAG 3 cut(s) 365, 456, 763
GluI GCNGC 2 cut(s) 90, 249
GsaI CCCAGC 1 cut(s) 622
HaeIII GGCC 4 cut(s) 76, 85, 116, 551
HapII CCGG 2 cut(s) 73, 86
Hin1II CATG 5 cut(s) 67, 121, 362, 383, 725
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HindIII AAGCTT 2 cut(s) 97, 636
HinfI GANTC 4 cut(s) 60, 339, 517, 592
HpaII CCGG 2 cut(s) 73, 86
HphI GGTGA 2 cut(s) 645, 710
Hpy166II GTNNAC 1 cut(s) 396
Hpy188I TCNGA 3 cut(s) 201, 213, 696
Hpy188III TCNNGA 5 cut(s) 134, 185, 365, 536, 632
Hpy8I GTNNAC 1 cut(s) 396
Hpy99I CGWCG 1 cut(s) 704
HpyAV CCTTC 3 cut(s) 238, 666, 762
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4IV ACGT 1 cut(s) 699
HpyCH4V TGCA 3 cut(s) 219, 256, 314
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 257, 624
HpyF3I CTNAG 1 cut(s) 36
HpySE526I ACGT 1 cut(s) 699
Hsp92II CATG 5 cut(s) 67, 121, 362, 383, 725
KroI GCCGGC 2 cut(s) 72, 85
KroNI GCCGGC 2 cut(s) 74, 87
Kzo9I GATC 4 cut(s) 55, 334, 400, 532
LpnPI CCDG 6 cut(s) 66, 86, 99, 271, 604, 617
Lsp1109I GCAGC 2 cut(s) 101, 260
LweI GCATC 2 cut(s) 192, 562
MaeI CTAG 3 cut(s) 365, 456, 763
MaeII ACGT 1 cut(s) 699
MaeIII GTNAC 2 cut(s) 466, 730
MalI GATC 4 cut(s) 57, 336, 402, 534
MboI GATC 4 cut(s) 55, 334, 400, 532
MboII GAAGA 5 cut(s) 17, 402, 429, 595, 614
MhlI GDGCHC 1 cut(s) 455
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 5 cut(s) 9, 171, 214, 275, 555
MluNI TGGCCA 1 cut(s) 116
MlyI GAGTC 1 cut(s) 69
Mox20I TGGCCA 1 cut(s) 116
MroNI GCCGGC 2 cut(s) 72, 85
MscI TGGCCA 1 cut(s) 116
MseI TTAA 3 cut(s) 554, 705, 758
Msp20I TGGCCA 1 cut(s) 116
MspI CCGG 2 cut(s) 73, 86
Mva1269I GAATGC 3 cut(s) 24, 483, 627
MwoI GCNNNNNNNGC 3 cut(s) 82, 257, 624
NaeI GCCGGC 2 cut(s) 74, 87
NcoI CCATGG 2 cut(s) 379, 721
NdeI CATATG 1 cut(s) 316
NdeII GATC 4 cut(s) 55, 334, 400, 532
NgoMIV GCCGGC 2 cut(s) 72, 85
NlaIII CATG 5 cut(s) 67, 121, 362, 383, 725
PceI AGGCCT 1 cut(s) 551
PctI GAATGC 3 cut(s) 24, 483, 627
PdiI GCCGGC 2 cut(s) 74, 87
PfeI GAWTC 3 cut(s) 339, 517, 592
PkrI GCNGC 2 cut(s) 91, 250
Ple19I CGATCG 1 cut(s) 337
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PspFI CCCAGC 1 cut(s) 618
PspPI GGNCC 2 cut(s) 83, 106
PvuI CGATCG 1 cut(s) 337
RsaI GTAC 2 cut(s) 496, 689
RsaNI GTAC 2 cut(s) 495, 688
SaqAI TTAA 3 cut(s) 554, 705, 758
SatI GCNGC 2 cut(s) 90, 249
Sau3AI GATC 4 cut(s) 55, 334, 400, 532
Sau96I GGNCC 2 cut(s) 83, 106
SchI GAGTC 1 cut(s) 69
SduI GDGCHC 1 cut(s) 455
SfaNI GCATC 2 cut(s) 192, 562
SfiI GGCCNNNNNGGCC 1 cut(s) 82
SinI GGWCC 1 cut(s) 106
Sse9I AATT 5 cut(s) 9, 171, 214, 275, 555
SseBI AGGCCT 1 cut(s) 551
SsiI CCGC 1 cut(s) 575
SspMI CTAG 3 cut(s) 365, 456, 763
StuI AGGCCT 1 cut(s) 551
StyI CCWWGG 2 cut(s) 379, 721
TaaI ACNGT 1 cut(s) 466
TaiI ACGT 1 cut(s) 702
TaqI TCGA 5 cut(s) 16, 58, 133, 333, 337
TasI AATT 5 cut(s) 9, 171, 214, 275, 555
TatI WGTACW 2 cut(s) 494, 687
TfiI GAWTC 3 cut(s) 339, 517, 592
Tru1I TTAA 3 cut(s) 554, 705, 758
Tru9I TTAA 3 cut(s) 554, 705, 758
TscAI CASTG 1 cut(s) 258
TseI GCWGC 2 cut(s) 89, 248
TspDTI ATGAA 1 cut(s) 134
TspGWI ACGGA 1 cut(s) 485
TspRI CASTG 1 cut(s) 258
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 1 cut(s) 275
XbaI TCTAGA 1 cut(s) 364
XspI CTAG 3 cut(s) 365, 456, 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.