Rorug04G0340600

Clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0017660
Physical Location & Seq
Forward (+)
51360854 .. 51361165
312 bp
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UTR
Exon/CDS
Intron
Rorug04G0340600.1

Sequence Viewer

Length: 312 bp
ATGGATCTGCAGCTGAGATCCAAGAGTGGGAGTGAGGGAGAGGATCATGGTCGTGAAGAGCGCAGGTGTTGTGGTAATAAAGAGAAGGAAGAGAGAGGTGTTGGTGTTGGTGTTGGTGTTGGTGGTGATGGTGATGGTGACGCAGACTTGGATCGGAAGCGACTCAACAGAGCAGAGTTGCTGCACCAGTTGGTGGTTGTGGAGATTGGTGTGCGACCCATTTTCAACGACGGCGGTTTAAATCAGCGACAGCTCTCATCGACTCCTTCATCATCATCATCATCATTTGTTTGCTTTTCTGGGATTCGATGA

Protein Analysis

103

Amino Acids

11.1

Weight (kDa)

5.67

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017660)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g33220
malus_domestica MD13G1017400.v1.1 MD16G1015500.v1.1
prunus_persica Prupe.1G336100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0442371
rosa_laevigata RLG00000006015
rosa_multiflora Rmu_co8473163.1_g000001 Rmu_sc0000124.1_g000044
rosa_rugosa Rorug04G0340600
rosa_samantha Rh4BG405900 Rh4CG421000 Rh4DG399000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 54
Acc36I ACCTGC 1 cut(s) 54
AccB7I CCANNNNNTGG 1 cut(s) 193
AciI CCGC 1 cut(s) 234
AclWI GGATC 4 cut(s) 12, 12, 51, 159
AfiI CCNNNNNNNGG 2 cut(s) 27, 193
AgsI TTSAA 1 cut(s) 226
AluBI AGCT 2 cut(s) 13, 253
AluI AGCT 2 cut(s) 13, 253
AlwI GGATC 4 cut(s) 12, 12, 51, 159
ApeKI GCWGC 2 cut(s) 10, 181
AspLEI GCGC 1 cut(s) 63
AsuHPI GGTGA 3 cut(s) 137, 143, 149
BbvI GCAGC 2 cut(s) 22, 168
BccI CCATC 2 cut(s) 122, 128
BceAI ACGGC 1 cut(s) 247
BfmI CTRYAG 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 54
BisI GCNGC 2 cut(s) 11, 182
BlsI GCNGC 2 cut(s) 12, 183
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 193
Bse1I ACTGG 1 cut(s) 187
BseLI CCNNNNNNNGG 2 cut(s) 27, 193
BseMII CTCAG 1 cut(s) 5
BseNI ACTGG 1 cut(s) 187
BseXI GCAGC 2 cut(s) 22, 168
BsgI GTGCAG 1 cut(s) 167
BslI CCNNNNNNNGG 2 cut(s) 27, 193
Bsp143I GATC 4 cut(s) 4, 17, 43, 151
BspACI CCGC 1 cut(s) 234
BspCNI CTCAG 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 12
BspMI ACCTGC 1 cut(s) 54
BspPI GGATC 4 cut(s) 12, 12, 51, 159
BspQI GCTCTTC 1 cut(s) 51
BsrI ACTGG 1 cut(s) 187
BssMI GATC 4 cut(s) 4, 17, 43, 151
Bst6I CTCTTC 2 cut(s) 51, 84
BstDEI CTNAG 1 cut(s) 14
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 4 cut(s) 7, 20, 46, 154
BstMBI GATC 4 cut(s) 4, 17, 43, 151
BstSFI CTRYAG 1 cut(s) 8
BstV1I GCAGC 2 cut(s) 22, 168
BstX2I RGATCY 2 cut(s) 4, 17
BstYI RGATCY 2 cut(s) 4, 17
BveI ACCTGC 1 cut(s) 54
CfoI GCGC 1 cut(s) 63
CseI GACGC 1 cut(s) 149
CviAII CATG 1 cut(s) 47
CviJI RGCY 2 cut(s) 13, 253
CviKI_1 RGCY 2 cut(s) 13, 253
DdeI CTNAG 1 cut(s) 14
DpnI GATC 4 cut(s) 6, 19, 45, 153
DpnII GATC 4 cut(s) 4, 17, 43, 151
DraI TTTAAA 1 cut(s) 240
Eam1104I CTCTTC 2 cut(s) 51, 84
EarI CTCTTC 2 cut(s) 51, 84
FaeI CATG 1 cut(s) 50
FaiI YATR 1 cut(s) 48
FatI CATG 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 11, 182
Fsp4HI GCNGC 2 cut(s) 11, 182
GlaI GCGC 1 cut(s) 62
GluI GCNGC 2 cut(s) 11, 182
HgaI GACGC 1 cut(s) 149
HhaI GCGC 1 cut(s) 63
Hin1II CATG 1 cut(s) 50
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HinfI GANTC 3 cut(s) 162, 262, 304
HphI GGTGA 3 cut(s) 137, 143, 149
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 1 cut(s) 53
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 2 cut(s) 79, 276
HpyCH4V TGCA 2 cut(s) 10, 184
HpyF3I CTNAG 1 cut(s) 14
Hsp92II CATG 1 cut(s) 50
HspAI GCGC 1 cut(s) 61
Kzo9I GATC 4 cut(s) 4, 17, 43, 151
LguI GCTCTTC 1 cut(s) 51
LpnPI CCDG 3 cut(s) 49, 200, 285
Lsp1109I GCAGC 2 cut(s) 22, 168
MaeIII GTNAC 1 cut(s) 137
MalI GATC 4 cut(s) 6, 19, 45, 153
MboI GATC 4 cut(s) 4, 17, 43, 151
MboII GAAGA 2 cut(s) 68, 101
MflI RGATCY 2 cut(s) 4, 17
MlyI GAGTC 2 cut(s) 156, 256
MnlI CCTC 3 cut(s) 28, 34, 89
MseI TTAA 1 cut(s) 239
MslI CAYNNNNRTG 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 13
NdeII GATC 4 cut(s) 4, 17, 43, 151
NlaIII CATG 1 cut(s) 50
NmuCI GTSAC 1 cut(s) 137
PaqCI CACCTGC 1 cut(s) 54
PciSI GCTCTTC 1 cut(s) 51
PfeI GAWTC 1 cut(s) 304
PflMI CCANNNNNTGG 1 cut(s) 193
PkrI GCNGC 2 cut(s) 12, 183
PleI GAGTC 2 cut(s) 156, 256
PpsI GAGTC 2 cut(s) 156, 256
PstI CTGCAG 1 cut(s) 12
PsuI RGATCY 2 cut(s) 4, 17
PvuII CAGCTG 1 cut(s) 13
RseI CAYNNNNRTG 1 cut(s) 51
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 2 cut(s) 11, 182
Sau3AI GATC 4 cut(s) 4, 17, 43, 151
SchI GAGTC 2 cut(s) 156, 256
SetI ASST 4 cut(s) 15, 68, 100, 255
SfcI CTRYAG 1 cut(s) 8
SgeI CNNG 6 cut(s) 34, 59, 65, 76, 160, 199
SmiMI CAYNNNNRTG 1 cut(s) 51
SsiI CCGC 1 cut(s) 234
TaqI TCGA 2 cut(s) 260, 307
TfiI GAWTC 1 cut(s) 304
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 2 cut(s) 10, 181
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 258
Van91I CCANNNNNTGG 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.