Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8473163.1

Orthogroup ID

OG0017660

Physical Location & Seq

Genomic Coordinates Reverse (-)

19 .. 1371

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8473163.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

atgcagaggcgattccggcaagtcttcaccgctctaaaagagcacagctccgtgagctacgccaagatcgccacggttggagggttctgcaacgtggagttcatcatcataaaagcaacagctccggatgacttaccgttgccggaaaagtacattcaagagctcttgaaaatcttctccatctctccatccaccctgagtgacttctcactcagcttctctcgccgcttcggcaagactcgatgctggagagttgcactcaagtgcttgatcctcctccaccgtctgctccgtgcagtccccgacgacagtgagtttaggagtgagctcctttggacacgttccattggcttgctgtccctcaacgactgtcgcttccgtgacgattcctcctcggcttcagcagactacacagcctttgtgagatcctatgctcagctccttgacgaagctcttcattgcttttgcttggataacgaggcacccgaagaaccacaaaaacaatatcaagaggaaggagaagaaggagaaggagaagatgaacaagaggaagaagatgaaccgcaatttcagagcttatcaaccaaaatggaagaaattagtcgaatgcttgaaatgttgccgcagctacaaagcctaactgatcgagtcatggactgccggccaactgggccggcagctaaaagcctcttggtccaaatggccatgaaacttctcattcgagacagctttgtgttttacacaatctttaggagggaaattgttttggttcttgatagcctctttcagatgccttatcggaactgcatatcagcttttgagatttacaagaaggcagcagtgcaagcaaatgacctttgtgaattctacgactggtgtaaggcaatgggattgtgtggtgcatatgagtatccatttatcgatcgaatcccacatattcaaatccatgctctagagaacttcctccatggaatgtggcagttgacagatcagtcctcttccacgccgacctcatcgtcatcctcttctttggtggagtgctctagtgaaactgtaacggaggacgacagcattcttgttagtacaaaatgggagaagccattgattcagttcggtggggatcacgagaacgaaaaggccttaattctgtttgggaaagatgcggaggagaagacgttgattcagtttgaagaagtggaggagagctgggagagcattctggaagcttccatcaatgtctcaccttcttatcaacaaaacaatatgttgtgcttgtacaatccgaacgtcgttaatcctttctatcaccatggatttgttaccaccaacaacgccattccttccttaatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0016020 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANTH

Protein Analysis

450

Amino Acids

51.52

Weight (kDa)

4.75

Isoelectric Point (pI)

58.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017660)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33220
malus_domestica	MD13G1017400.v1.1 MD16G1015500.v1.1
prunus_persica	Prupe.1G336100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0442371
rosa_laevigata	RLG00000006015
rosa_multiflora	Rmu_co8473163.1_g000001 Rmu_sc0000124.1_g000044
rosa_rugosa	Rorug04G0340600
rosa_samantha	Rh4BG405900 Rh4CG421000 Rh4DG399000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	991, 1015
AccB1I	GGYRCC	1 cut(s)	481
AccBSI	CCGCTC	1 cut(s)	32
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	5 cut(s)	30, 226, 563, 623, 1163
AclWI	GGATC	3 cut(s)	265, 420, 1128
AcoI	YGGCCR	2 cut(s)	662, 702
AcsI	RAATTY	1 cut(s)	863
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	3 cut(s)	152, 1084, 1277
AflIII	ACRYGT	1 cut(s)	338
AgsI	TTSAA	5 cut(s)	158, 169, 614, 941, 1190
AleI	CACNNNNGTG	1 cut(s)	262
Alw21I	GWGCWC	4 cut(s)	45, 165, 330, 1043
Alw26I	GTCTC	2 cut(s)	717, 1243
AlwI	GGATC	3 cut(s)	265, 420, 1128
Aor13HI	TCCGGA	1 cut(s)	124
AoxI	GGCC	4 cut(s)	662, 671, 702, 1137
ApeKI	GCWGC	3 cut(s)	625, 677, 836
ApoI	RAATTY	1 cut(s)	863
Asp700I	GAANNNNTTC	2 cut(s)	173, 453
AspS9I	GGNCC	2 cut(s)	671, 694
AsuHPI	GGTGA	3 cut(s)	19, 1233, 1298
AvaII	GGWCC	1 cut(s)	694
BalI	TGGCCA	1 cut(s)	704
BanI	GGYRCC	1 cut(s)	481
BanII	GRGCYC	2 cut(s)	165, 330
BauI	CACGAG	1 cut(s)	1124
BbsI	GAAGAC	2 cut(s)	16, 1178
Bbv12I	GWGCWC	4 cut(s)	45, 165, 330, 1043
BbvI	GCAGC	3 cut(s)	637, 689, 848
BccI	CCATC	3 cut(s)	188, 196, 1238
BciVI	GTATCC	1 cut(s)	921
BcoDI	GTCTC	2 cut(s)	717, 1243
BfaI	CTAG	3 cut(s)	953, 1044, 1351
BfuI	GTATCC	1 cut(s)	921
BglI	GCCNNNNNGGC	2 cut(s)	231, 670
BisI	GCNGC	5 cut(s)	226, 623, 626, 678, 837
BlpI	GCTNAGC	1 cut(s)	435
BlsI	GCNGC	5 cut(s)	227, 624, 627, 679, 838
Bme18I	GGWCC	1 cut(s)	694
BmgT120I	GGNCC	2 cut(s)	671, 694
BmiI	GGNNCC	1 cut(s)	483
BmrI	ACTGGG	1 cut(s)	678
BmsI	GCATC	3 cut(s)	233, 780, 1150
BmuI	ACTGGG	1 cut(s)	678
BpiI	GAAGAC	2 cut(s)	16, 1178
BplI	GAGNNNNNCTC	4 cut(s)	32, 64, 243, 275
BpmI	CTGGAG	1 cut(s)	268
Bpu1102I	GCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	245
Bsa29I	ATCGAT	1 cut(s)	921
BsaJI	CCNNGG	4 cut(s)	72, 393, 967, 1309
BsaWI	WCCGGW	1 cut(s)	124
BsaXI	ACNNNNNCTCC	4 cut(s)	374, 404, 1160, 1190
Bse118I	RCCGGY	2 cut(s)	660, 673
Bse1I	ACTGG	2 cut(s)	673, 878
Bse3DI	GCAATG	2 cut(s)	457, 891
BseAI	TCCGGA	1 cut(s)	124
BseCI	ATCGAT	1 cut(s)	921
BseDI	CCNNGG	4 cut(s)	72, 393, 967, 1309
BseGI	GGATG	3 cut(s)	133, 188, 1019
BseMI	GCAATG	2 cut(s)	457, 891
BseMII	CTCAG	3 cut(s)	188, 226, 449
BseNI	ACTGG	2 cut(s)	673, 878
BseRI	GAGGAG	4 cut(s)	266, 382, 1181, 1214
BseXI	GCAGC	3 cut(s)	637, 689, 848
BseYI	CCCAGC	1 cut(s)	1206
BsgI	GTGCAG	1 cut(s)	315
Bsh1285I	CGRYCG	1 cut(s)	925
BshFI	GGCC	4 cut(s)	664, 673, 704, 1139
BshNI	GGYRCC	1 cut(s)	481
BshVI	ATCGAT	1 cut(s)	921
BsiEI	CGRYCG	1 cut(s)	925
BsiHKAI	GWGCWC	4 cut(s)	45, 165, 330, 1043
BsiSI	CCGG	5 cut(s)	16, 125, 143, 661, 674
BslFI	GGGAC	2 cut(s)	284, 343
BsmAI	GTCTC	2 cut(s)	717, 1243
BsmFI	GGGAC	2 cut(s)	284, 343
BsmI	GAATGC	3 cut(s)	612, 1071, 1215
BsnI	GGCC	4 cut(s)	664, 673, 704, 1139
Bsp1286I	GDGCHC	4 cut(s)	45, 165, 330, 1043
Bsp13I	TCCGGA	1 cut(s)	124
Bsp1407I	TGTACA	1 cut(s)	1275
Bsp143I	GATC	7 cut(s)	66, 270, 425, 643, 922, 988, 1120
Bsp1720I	GCTNAGC	1 cut(s)	435
Bsp19I	CCATGG	2 cut(s)	967, 1309
BspACI	CCGC	5 cut(s)	30, 226, 563, 623, 1163
BspANI	GGCC	4 cut(s)	664, 673, 704, 1139
BspCNI	CTCAG	3 cut(s)	189, 225, 448
BspDI	ATCGAT	1 cut(s)	921
BspEI	TCCGGA	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	483
BspPI	GGATC	3 cut(s)	265, 420, 1128
BspQI	GCTCTTC	1 cut(s)	459
BspT107I	GGYRCC	1 cut(s)	481
BsrBI	CCGCTC	1 cut(s)	32
BsrDI	GCAATG	2 cut(s)	457, 891
BsrFI	RCCGGY	2 cut(s)	660, 673
BsrGI	TGTACA	1 cut(s)	1275
BsrI	ACTGG	2 cut(s)	673, 878
BssAI	RCCGGY	2 cut(s)	660, 673
BssECI	CCNNGG	4 cut(s)	72, 393, 967, 1309
BssMI	GATC	7 cut(s)	66, 270, 425, 643, 922, 988, 1120
BssSI	CACGAG	1 cut(s)	1124
BssT1I	CCWWGG	2 cut(s)	967, 1309
Bst2BI	CACGAG	1 cut(s)	1124
Bst4CI	ACNGT	6 cut(s)	76, 138, 284, 311, 371, 1054
Bst6I	CTCTTC	3 cut(s)	459, 1003, 1030
BstAUI	TGTACA	1 cut(s)	1275
BstC8I	GCNNGC	4 cut(s)	353, 662, 675, 846
BstDEI	CTNAG	3 cut(s)	197, 212, 435
BstDSI	CCRYGG	3 cut(s)	72, 967, 1309
BstF5I	GGATG	3 cut(s)	133, 188, 1019
BstKTI	GATC	7 cut(s)	69, 273, 428, 646, 925, 991, 1123
BstMAI	GTCTC	2 cut(s)	717, 1243
BstMBI	GATC	7 cut(s)	66, 270, 425, 643, 922, 988, 1120
BstMCI	CGRYCG	1 cut(s)	925
BstMWI	GCNNNNNNNGC	8 cut(s)	16, 54, 68, 222, 231, 670, 845, 1212
BstV1I	GCAGC	3 cut(s)	637, 689, 848
BstV2I	GAAGAC	2 cut(s)	16, 1178
BstX2I	RGATCY	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	425
Bsu15I	ATCGAT	1 cut(s)	921
BsuI	GTATCC	1 cut(s)	921
BsuRI	GGCC	4 cut(s)	664, 673, 704, 1139
BsuTUI	ATCGAT	1 cut(s)	921
BtgI	CCRYGG	3 cut(s)	72, 967, 1309
BtsCI	GGATG	3 cut(s)	133, 188, 1019
BtsI	GCAGTG	1 cut(s)	846
BtsIMutI	CAGTG	2 cut(s)	316, 846
Cac8I	GCNNGC	4 cut(s)	353, 662, 675, 846
Cfr10I	RCCGGY	2 cut(s)	660, 673
Cfr13I	GGNCC	2 cut(s)	671, 694
ClaI	ATCGAT	1 cut(s)	921
Csp6I	GTAC	3 cut(s)	151, 1083, 1276
CviAII	CATG	5 cut(s)	652, 706, 947, 968, 1310
CviQI	GTAC	3 cut(s)	151, 1083, 1276
DdeI	CTNAG	3 cut(s)	197, 212, 435
DpnI	GATC	7 cut(s)	68, 272, 427, 645, 924, 990, 1122
DpnII	GATC	7 cut(s)	66, 270, 425, 643, 922, 988, 1120
DrdI	GACNNNNNNGTC	2 cut(s)	991, 1015
DseDI	GACNNNNNNGTC	2 cut(s)	991, 1015
EaeI	YGGCCR	2 cut(s)	662, 702
Eam1104I	CTCTTC	3 cut(s)	459, 1003, 1030
EarI	CTCTTC	3 cut(s)	459, 1003, 1030
Ecl136II	GAGCTC	2 cut(s)	163, 328
Eco130I	CCWWGG	2 cut(s)	967, 1309
Eco147I	AGGCCT	1 cut(s)	1139
Eco24I	GRGCYC	2 cut(s)	165, 330
Eco47I	GGWCC	1 cut(s)	694
Eco53kI	GAGCTC	2 cut(s)	163, 328
Eco57I	CTGAAG	1 cut(s)	384
EcoICRI	GAGCTC	2 cut(s)	163, 328
EcoRI	GAATTC	1 cut(s)	863
EcoT14I	CCWWGG	2 cut(s)	967, 1309
EcoT38I	GRGCYC	2 cut(s)	165, 330
ErhI	CCWWGG	2 cut(s)	967, 1309
FaeI	CATG	5 cut(s)	655, 709, 950, 971, 1313
FaqI	GGGAC	2 cut(s)	284, 343
FatI	CATG	5 cut(s)	651, 705, 946, 967, 1309
FauNDI	CATATG	1 cut(s)	904
Fnu4HI	GCNGC	5 cut(s)	226, 623, 626, 678, 837
FokI	GGATG	3 cut(s)	140, 175, 1006
FriOI	GRGCYC	2 cut(s)	165, 330
Fsp4HI	GCNGC	5 cut(s)	226, 623, 626, 678, 837
FspBI	CTAG	3 cut(s)	953, 1044, 1351
GluI	GCNGC	5 cut(s)	226, 623, 626, 678, 837
GsaI	CCCAGC	1 cut(s)	1210
GsuI	CTGGAG	1 cut(s)	268
HaeIII	GGCC	4 cut(s)	664, 673, 704, 1139
HapII	CCGG	5 cut(s)	16, 125, 143, 661, 674
Hin1II	CATG	5 cut(s)	655, 709, 950, 971, 1313
HincII	GTYRAC	1 cut(s)	984
HindII	GTYRAC	1 cut(s)	984
HindIII	AAGCTT	1 cut(s)	1224
HinfI	GANTC	7 cut(s)	12, 238, 386, 648, 927, 1105, 1180
HpaII	CCGG	5 cut(s)	16, 125, 143, 661, 674
HphI	GGTGA	3 cut(s)	19, 1233, 1298
Hpy166II	GTNNAC	1 cut(s)	984
Hpy188I	TCNGA	4 cut(s)	573, 789, 801, 1284
Hpy188III	TCNNGA	9 cut(s)	125, 158, 166, 509, 722, 773, 953, 1124, 1220
Hpy8I	GTNNAC	1 cut(s)	984
Hpy99I	CGWCG	2 cut(s)	308, 1292
HpyAV	CCTTC	6 cut(s)	509, 518, 524, 826, 1254, 1350
HpyCH4III	ACNGT	6 cut(s)	76, 138, 284, 311, 371, 1054
HpyCH4IV	ACGT	4 cut(s)	93, 340, 1175, 1287
HpyCH4V	TGCA	7 cut(s)	4, 90, 257, 296, 807, 844, 902
HpyF10VI	GCNNNNNNNGC	8 cut(s)	16, 54, 68, 222, 231, 670, 845, 1212
HpyF3I	CTNAG	3 cut(s)	197, 212, 435
HpySE526I	ACGT	4 cut(s)	93, 340, 1175, 1287
Hsp92II	CATG	5 cut(s)	655, 709, 950, 971, 1313
Kpn2I	TCCGGA	1 cut(s)	124
KroI	GCCGGC	2 cut(s)	660, 673
KroNI	GCCGGC	2 cut(s)	662, 675
Kzo9I	GATC	7 cut(s)	66, 270, 425, 643, 922, 988, 1120
LguI	GCTCTTC	1 cut(s)	459
LmnI	GCTCC	5 cut(s)	53, 127, 294, 333, 444
Lsp1109I	GCAGC	3 cut(s)	637, 689, 848
LweI	GCATC	3 cut(s)	233, 780, 1150
MaeI	CTAG	3 cut(s)	953, 1044, 1351
MaeII	ACGT	4 cut(s)	93, 340, 1175, 1287
MaeIII	GTNAC	4 cut(s)	200, 380, 1054, 1318
MalI	GATC	7 cut(s)	68, 272, 427, 645, 924, 990, 1122
MbiI	CCGCTC	1 cut(s)	32
MboI	GATC	7 cut(s)	66, 270, 425, 643, 922, 988, 1120
MflI	RGATCY	1 cut(s)	425
MhlI	GDGCHC	4 cut(s)	45, 165, 330, 1043
MlsI	TGGCCA	1 cut(s)	704
MluCI	AATT	5 cut(s)	566, 597, 759, 863, 1143
MluNI	TGGCCA	1 cut(s)	704
MlyI	GAGTC	2 cut(s)	232, 657
MmeI	TCCRAC	1 cut(s)	58
Mox20I	TGGCCA	1 cut(s)	704
MroI	TCCGGA	1 cut(s)	124
MroNI	GCCGGC	2 cut(s)	660, 673
MroXI	GAANNNNTTC	2 cut(s)	173, 453
MscI	TGGCCA	1 cut(s)	704
MseI	TTAA	3 cut(s)	1142, 1293, 1346
MslI	CAYNNNNRTG	1 cut(s)	262
Msp20I	TGGCCA	1 cut(s)	704
MspI	CCGG	5 cut(s)	16, 125, 143, 661, 674
Mva1269I	GAATGC	3 cut(s)	612, 1071, 1215
MwoI	GCNNNNNNNGC	8 cut(s)	16, 54, 68, 222, 231, 670, 845, 1212
NaeI	GCCGGC	2 cut(s)	662, 675
NcoI	CCATGG	2 cut(s)	967, 1309
NdeI	CATATG	1 cut(s)	904
NdeII	GATC	7 cut(s)	66, 270, 425, 643, 922, 988, 1120
NgoMIV	GCCGGC	2 cut(s)	660, 673
NlaIII	CATG	5 cut(s)	655, 709, 950, 971, 1313
NlaIV	GGNNCC	1 cut(s)	483
NmeAIII	GCCGAG	1 cut(s)	374
NmuCI	GTSAC	2 cut(s)	200, 380
OliI	CACNNNNGTG	1 cut(s)	262
PceI	AGGCCT	1 cut(s)	1139
PciSI	GCTCTTC	1 cut(s)	459
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PctI	GAATGC	3 cut(s)	612, 1071, 1215
PdiI	GCCGGC	2 cut(s)	662, 675
PdmI	GAANNNNTTC	2 cut(s)	173, 453
PfeI	GAWTC	5 cut(s)	12, 386, 927, 1105, 1180
PkrI	GCNGC	5 cut(s)	227, 624, 627, 679, 838
Ple19I	CGATCG	1 cut(s)	925
PleI	GAGTC	2 cut(s)	232, 656
PpsI	GAGTC	2 cut(s)	232, 656
Psp124BI	GAGCTC	2 cut(s)	165, 330
PspFI	CCCAGC	1 cut(s)	1206
PspN4I	GGNNCC	1 cut(s)	483
PspPI	GGNCC	2 cut(s)	671, 694
PsuI	RGATCY	1 cut(s)	425
PvuI	CGATCG	1 cut(s)	925
RsaI	GTAC	3 cut(s)	152, 1084, 1277
RsaNI	GTAC	3 cut(s)	151, 1083, 1276
RseI	CAYNNNNRTG	1 cut(s)	262
SacI	GAGCTC	2 cut(s)	165, 330
SapI	GCTCTTC	1 cut(s)	459
SaqAI	TTAA	3 cut(s)	1142, 1293, 1346
SatI	GCNGC	5 cut(s)	226, 623, 626, 678, 837
Sau3AI	GATC	7 cut(s)	66, 270, 425, 643, 922, 988, 1120
Sau96I	GGNCC	2 cut(s)	671, 694
SchI	GAGTC	2 cut(s)	232, 657
SduI	GDGCHC	4 cut(s)	45, 165, 330, 1043
SfaNI	GCATC	3 cut(s)	233, 780, 1150
SfiI	GGCCNNNNNGGCC	1 cut(s)	670
SinI	GGWCC	1 cut(s)	694
SmiMI	CAYNNNNRTG	1 cut(s)	262
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	5 cut(s)	566, 597, 759, 863, 1143
SseBI	AGGCCT	1 cut(s)	1139
SsiI	CCGC	5 cut(s)	30, 226, 563, 623, 1163
SspMI	CTAG	3 cut(s)	953, 1044, 1351
SstI	GAGCTC	2 cut(s)	165, 330
StuI	AGGCCT	1 cut(s)	1139
StyI	CCWWGG	2 cut(s)	967, 1309
TaaI	ACNGT	6 cut(s)	76, 138, 284, 311, 371, 1054
TaiI	ACGT	4 cut(s)	96, 343, 1178, 1290
TaqI	TCGA	6 cut(s)	241, 604, 646, 721, 921, 925
TasI	AATT	5 cut(s)	566, 597, 759, 863, 1143
TatI	WGTACW	3 cut(s)	150, 1082, 1275
TauI	GCSGC	2 cut(s)	228, 625
TfiI	GAWTC	5 cut(s)	12, 386, 927, 1105, 1180
Tru1I	TTAA	3 cut(s)	1142, 1293, 1346
Tru9I	TTAA	3 cut(s)	1142, 1293, 1346
TscAI	CASTG	2 cut(s)	316, 846
TseFI	GTSAC	2 cut(s)	200, 380
TseI	GCWGC	3 cut(s)	625, 677, 836
Tsp45I	GTSAC	2 cut(s)	200, 380
TspDTI	ATGAA	5 cut(s)	91, 446, 555, 573, 722
TspGWI	ACGGA	4 cut(s)	40, 281, 368, 1073
TspRI	CASTG	2 cut(s)	316, 846
VpaK11BI	GGWCC	1 cut(s)	694
XapI	RAATTY	1 cut(s)	863
XbaI	TCTAGA	1 cut(s)	952
XmnI	GAANNNNTTC	2 cut(s)	173, 453
XspI	CTAG	3 cut(s)	953, 1044, 1351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.