SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD H box
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G02090 |
| fragaria_vesca | FvH4_4g36060 |
| malus_domestica | MD16G1009400.v1.1 |
| prunus_persica | Prupe.1G341200_v2.0.a1 Prupe.1G341200_v2.0.a1 |
| pyrus_communis | pycom16g00910 |
| rosa_chinensis | RchiOBHm_Chr4g0445681 |
| rosa_laevigata | RLG00000005717 |
| rosa_multiflora | Rmu_sc0003637.1_g000018 |
| rosa_roxburghii | Rroxscaffold_5G00386160 |
| rosa_rugosa | Rorug04G0364700 |
| rosa_samantha | Rh4AG425600 |
| rosa_wichuraiana | Rw4G036460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 215 |
| AatII | GACGTC | 2 cut(s) | 219, 1757 |
| AccB1I | GGYRCC | 1 cut(s) | 768 |
| AccI | GTMKAC | 2 cut(s) | 219, 1898 |
| AccII | CGCG | 3 cut(s) | 9, 512, 808 |
| AciI | CCGC | 7 cut(s) | 9, 107, 441, 512, 857, 1273, 1414 |
| AclI | AACGTT | 2 cut(s) | 943, 2073 |
| AcoI | YGGCCR | 6 cut(s) | 253, 402, 624, 840, 1189, 2014 |
| AcsI | RAATTY | 1 cut(s) | 933 |
| AcuI | CTGAAG | 5 cut(s) | 483, 779, 1191, 1733, 2013 |
| AcyI | GRCGYC | 3 cut(s) | 216, 1228, 1754 |
| AdeI | CACNNNGTG | 1 cut(s) | 1037 |
| AfaI | GTAC | 3 cut(s) | 1552, 1825, 2059 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 483 |
| AgsI | TTSAA | 9 cut(s) | 67, 542, 682, 822, 899, 988, 1864, 1924, 1969 |
| AhlI | ACTAGT | 1 cut(s) | 1468 |
| AjnI | CCWGG | 3 cut(s) | 250, 699, 2118 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1190, 1222 |
| Alw21I | GWGCWC | 3 cut(s) | 423, 836, 1095 |
| Alw26I | GTCTC | 4 cut(s) | 17, 644, 1219, 1686 |
| Ama87I | CYCGRG | 2 cut(s) | 75, 641 |
| AoxI | GGCC | 8 cut(s) | 239, 253, 402, 624, 840, 1189, 1912, 2014 |
| ApeKI | GCWGC | 5 cut(s) | 473, 803, 1343, 1673, 2111 |
| ApoI | RAATTY | 1 cut(s) | 933 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1701 |
| AspLEI | GCGC | 2 cut(s) | 9, 808 |
| AspS9I | GGNCC | 3 cut(s) | 240, 704, 1211 |
| AsuC2I | CCSGG | 1 cut(s) | 1411 |
| AsuHPI | GGTGA | 2 cut(s) | 1843, 2041 |
| AsuII | TTCGAA | 1 cut(s) | 24 |
| AvaI | CYCGRG | 2 cut(s) | 75, 641 |
| AvaII | GGWCC | 2 cut(s) | 704, 1211 |
| BaeGI | GKGCMC | 1 cut(s) | 773 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1932, 1965 |
| BalI | TGGCCA | 2 cut(s) | 842, 2016 |
| BanI | GGYRCC | 1 cut(s) | 768 |
| BanII | GRGCYC | 3 cut(s) | 423, 836, 1095 |
| BauI | CACGAG | 1 cut(s) | 878 |
| BbsI | GAAGAC | 2 cut(s) | 653, 2171 |
| Bbv12I | GWGCWC | 3 cut(s) | 423, 836, 1095 |
| BbvI | GCAGC | 5 cut(s) | 460, 790, 1355, 1685, 2098 |
| BccI | CCATC | 5 cut(s) | 281, 628, 1611, 1811, 2131 |
| BceAI | ACGGC | 3 cut(s) | 240, 442, 1176 |
| BcgI | CGANNNNNNTGC | 3 cut(s) | 962, 996, 2176 |
| BciT130I | CCWGG | 3 cut(s) | 252, 701, 2120 |
| BciVI | GTATCC | 1 cut(s) | 1403 |
| BcnI | CCSGG | 1 cut(s) | 1411 |
| BcoDI | GTCTC | 4 cut(s) | 17, 644, 1219, 1686 |
| BcuI | ACTAGT | 1 cut(s) | 1468 |
| BfaI | CTAG | 3 cut(s) | 1469, 2045, 2105 |
| BfmI | CTRYAG | 3 cut(s) | 1003, 1944, 2112 |
| BfuI | GTATCC | 1 cut(s) | 1403 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 623 |
| BglII | AGATCT | 2 cut(s) | 1123, 1419 |
| BisI | GCNGC | 9 cut(s) | 107, 474, 513, 804, 857, 1344, 1415, 1674, 2112 |
| BlsI | GCNGC | 9 cut(s) | 108, 475, 514, 805, 858, 1345, 1416, 1675, 2113 |
| BmcAI | AGTACT | 1 cut(s) | 1825 |
| Bme1390I | CCNGG | 4 cut(s) | 252, 701, 1411, 2120 |
| Bme18I | GGWCC | 2 cut(s) | 704, 1211 |
| BmeT110I | CYCGRG | 2 cut(s) | 75, 641 |
| BmgT120I | GGNCC | 3 cut(s) | 240, 704, 1211 |
| BmiI | GGNNCC | 5 cut(s) | 438, 616, 705, 770, 1212 |
| BmrFI | CCNGG | 4 cut(s) | 252, 701, 1411, 2120 |
| BmrI | ACTGGG | 1 cut(s) | 754 |
| BmsI | GCATC | 4 cut(s) | 1107, 1300, 1735, 2098 |
| BmuI | ACTGGG | 1 cut(s) | 754 |
| BoxI | GACNNNNGTC | 1 cut(s) | 702 |
| BpiI | GAAGAC | 2 cut(s) | 653, 2171 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 41, 73, 1367, 1399 |
| BpmI | CTGGAG | 4 cut(s) | 773, 1127, 1929, 1953 |
| Bpu14I | TTCGAA | 1 cut(s) | 24 |
| BpuEI | CTTGAG | 3 cut(s) | 68, 430, 536 |
| BpuMI | CCSGG | 1 cut(s) | 1411 |
| BsaHI | GRCGYC | 3 cut(s) | 216, 1228, 1754 |
| BsaI | GGTCTC | 2 cut(s) | 17, 644 |
| BsaJI | CCNNGG | 8 cut(s) | 424, 700, 1137, 1396, 1409, 1915, 2052, 2169 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 94, 124, 282, 312 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 483 |
| Bse1I | ACTGG | 4 cut(s) | 749, 790, 1747, 1936 |
| Bse3DI | GCAATG | 1 cut(s) | 956 |
| BseBI | CCWGG | 3 cut(s) | 252, 701, 2120 |
| BseDI | CCNNGG | 8 cut(s) | 424, 700, 1137, 1396, 1409, 1915, 2052, 2169 |
| BseGI | GGATG | 8 cut(s) | 364, 505, 1147, 1459, 1501, 1522, 1792, 2156 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 483 |
| BseMI | GCAATG | 1 cut(s) | 956 |
| BseMII | CTCAG | 4 cut(s) | 509, 1386, 1697, 1841 |
| BseNI | ACTGG | 4 cut(s) | 749, 790, 1747, 1936 |
| BseRI | GAGGAG | 7 cut(s) | 49, 62, 130, 293, 359, 368, 1346 |
| BseSI | GKGCMC | 1 cut(s) | 773 |
| BseX3I | CGGCCG | 1 cut(s) | 402 |
| BseXI | GCAGC | 5 cut(s) | 460, 790, 1355, 1685, 2098 |
| BseYI | CCCAGC | 1 cut(s) | 1721 |
| BsgI | GTGCAG | 1 cut(s) | 1362 |
| Bsh1236I | CGCG | 3 cut(s) | 9, 512, 808 |
| Bsh1285I | CGRYCG | 1 cut(s) | 405 |
| BshFI | GGCC | 8 cut(s) | 241, 255, 404, 626, 842, 1191, 1914, 2016 |
| BshNI | GGYRCC | 1 cut(s) | 768 |
| BsiEI | CGRYCG | 1 cut(s) | 405 |
| BsiHKAI | GWGCWC | 3 cut(s) | 423, 836, 1095 |
| BsiHKCI | CYCGRG | 2 cut(s) | 75, 641 |
| BsiSI | CCGG | 1 cut(s) | 1411 |
| BslFI | GGGAC | 2 cut(s) | 1078, 1224 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 483 |
| BsmAI | GTCTC | 4 cut(s) | 17, 644, 1219, 1686 |
| BsmBI | CGTCTC | 1 cut(s) | 1219 |
| BsmFI | GGGAC | 2 cut(s) | 1078, 1224 |
| BsmI | GAATGC | 1 cut(s) | 52 |
| BsnI | GGCC | 8 cut(s) | 241, 255, 404, 626, 842, 1191, 1914, 2016 |
| Bso31I | GGTCTC | 2 cut(s) | 17, 644 |
| BsoBI | CYCGRG | 2 cut(s) | 75, 641 |
| Bsp119I | TTCGAA | 1 cut(s) | 24 |
| Bsp1286I | GDGCHC | 4 cut(s) | 423, 773, 836, 1095 |
| Bsp143I | GATC | 7 cut(s) | 451, 809, 925, 1123, 1419, 1981, 1996 |
| Bsp19I | CCATGG | 1 cut(s) | 2169 |
| BspACI | CCGC | 7 cut(s) | 9, 107, 441, 512, 857, 1273, 1414 |
| BspANI | GGCC | 8 cut(s) | 241, 255, 404, 626, 842, 1191, 1914, 2016 |
| BspCNI | CTCAG | 4 cut(s) | 508, 1385, 1696, 1840 |
| BspFNI | CGCG | 3 cut(s) | 9, 512, 808 |
| BspHI | TCATGA | 1 cut(s) | 1954 |
| BspLI | GGNNCC | 5 cut(s) | 438, 616, 705, 770, 1212 |
| BspMAI | CTGCAG | 1 cut(s) | 2116 |
| BspT104I | TTCGAA | 1 cut(s) | 24 |
| BspT107I | GGYRCC | 1 cut(s) | 768 |
| BspTNI | GGTCTC | 2 cut(s) | 17, 644 |
| BsrDI | GCAATG | 1 cut(s) | 956 |
| BsrI | ACTGG | 4 cut(s) | 749, 790, 1747, 1936 |
| BssECI | CCNNGG | 8 cut(s) | 424, 700, 1137, 1396, 1409, 1915, 2052, 2169 |
| BssMI | GATC | 7 cut(s) | 451, 809, 925, 1123, 1419, 1981, 1996 |
| BssNI | GRCGYC | 3 cut(s) | 216, 1228, 1754 |
| BssSI | CACGAG | 1 cut(s) | 878 |
| BssT1I | CCWWGG | 4 cut(s) | 1396, 1915, 2052, 2169 |
| Bst2BI | CACGAG | 1 cut(s) | 878 |
| Bst2UI | CCWGG | 3 cut(s) | 252, 701, 2120 |
| Bst4CI | ACNGT | 7 cut(s) | 908, 1391, 1487, 1583, 1617, 1945, 2062 |
| Bst6I | CTCTTC | 1 cut(s) | 330 |
| BstACI | GRCGYC | 3 cut(s) | 216, 1228, 1754 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1037 |
| BstBI | TTCGAA | 1 cut(s) | 24 |
| BstC8I | GCNNGC | 4 cut(s) | 1671, 1719, 1888, 1892 |
| BstDEI | CTNAG | 4 cut(s) | 495, 1372, 1683, 1827 |
| BstDSI | CCRYGG | 2 cut(s) | 424, 2169 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 481 |
| BstF5I | GGATG | 8 cut(s) | 364, 505, 1147, 1459, 1501, 1522, 1792, 2156 |
| BstFNI | CGCG | 3 cut(s) | 9, 512, 808 |
| BstHHI | GCGC | 2 cut(s) | 9, 808 |
| BstKTI | GATC | 7 cut(s) | 454, 812, 928, 1126, 1422, 1984, 1999 |
| BstMAI | GTCTC | 4 cut(s) | 17, 644, 1219, 1686 |
| BstMBI | GATC | 7 cut(s) | 451, 809, 925, 1123, 1419, 1981, 1996 |
| BstMCI | CGRYCG | 1 cut(s) | 405 |
| BstNI | CCWGG | 3 cut(s) | 252, 701, 2120 |
| BstNSI | RCATGY | 2 cut(s) | 519, 1890 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 702 |
| BstSCI | CCNGG | 4 cut(s) | 250, 699, 1409, 2118 |
| BstSFI | CTRYAG | 3 cut(s) | 1003, 1944, 2112 |
| BstSLI | GKGCMC | 1 cut(s) | 773 |
| BstUI | CGCG | 3 cut(s) | 9, 512, 808 |
| BstV1I | GCAGC | 5 cut(s) | 460, 790, 1355, 1685, 2098 |
| BstV2I | GAAGAC | 2 cut(s) | 653, 2171 |
| BstX2I | RGATCY | 2 cut(s) | 1123, 1419 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 569, 797 |
| BstYI | RGATCY | 2 cut(s) | 1123, 1419 |
| BstZI | CGGCCG | 1 cut(s) | 402 |
| BsuI | GTATCC | 1 cut(s) | 1403 |
| BsuRI | GGCC | 8 cut(s) | 241, 255, 404, 626, 842, 1191, 1914, 2016 |
| BtgI | CCRYGG | 2 cut(s) | 424, 2169 |
| BtgZI | GCGATG | 2 cut(s) | 300, 1991 |
| BtsCI | GGATG | 8 cut(s) | 364, 505, 1147, 1459, 1501, 1522, 1792, 2156 |
| BtsIMutI | CAGTG | 6 cut(s) | 616, 913, 1492, 1629, 1709, 1754 |
| Cac8I | GCNNGC | 4 cut(s) | 1671, 1719, 1888, 1892 |
| CciI | TCATGA | 1 cut(s) | 1954 |
| CfoI | GCGC | 2 cut(s) | 9, 808 |
| Cfr13I | GGNCC | 3 cut(s) | 240, 704, 1211 |
| CseI | GACGC | 3 cut(s) | 172, 1037, 1236 |
| Csp6I | GTAC | 3 cut(s) | 1551, 1824, 2058 |
| CviAII | CATG | 9 cut(s) | 516, 797, 980, 1088, 1291, 1622, 1887, 1955, 2170 |
| CviQI | GTAC | 3 cut(s) | 1551, 1824, 2058 |
| DdeI | CTNAG | 4 cut(s) | 495, 1372, 1683, 1827 |
| DpnI | GATC | 7 cut(s) | 453, 811, 927, 1125, 1421, 1983, 1998 |
| DpnII | GATC | 7 cut(s) | 451, 809, 925, 1123, 1419, 1981, 1996 |
| DraIII | CACNNNGTG | 1 cut(s) | 1037 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 215 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 215 |
| EaeI | YGGCCR | 6 cut(s) | 253, 402, 624, 840, 1189, 2014 |
| EagI | CGGCCG | 1 cut(s) | 402 |
| Eam1104I | CTCTTC | 1 cut(s) | 330 |
| EarI | CTCTTC | 1 cut(s) | 330 |
| Ecl136II | GAGCTC | 3 cut(s) | 421, 834, 1093 |
| EclXI | CGGCCG | 1 cut(s) | 402 |
| Eco130I | CCWWGG | 4 cut(s) | 1396, 1915, 2052, 2169 |
| Eco24I | GRGCYC | 3 cut(s) | 423, 836, 1095 |
| Eco31I | GGTCTC | 2 cut(s) | 17, 644 |
| Eco47I | GGWCC | 2 cut(s) | 704, 1211 |
| Eco52I | CGGCCG | 1 cut(s) | 402 |
| Eco53kI | GAGCTC | 3 cut(s) | 421, 834, 1093 |
| Eco57I | CTGAAG | 5 cut(s) | 483, 779, 1191, 1733, 2013 |
| Eco88I | CYCGRG | 2 cut(s) | 75, 641 |
| EcoICRI | GAGCTC | 3 cut(s) | 421, 834, 1093 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 481 |
| EcoRII | CCWGG | 3 cut(s) | 250, 699, 2118 |
| EcoT14I | CCWWGG | 4 cut(s) | 1396, 1915, 2052, 2169 |
| EcoT38I | GRGCYC | 3 cut(s) | 423, 836, 1095 |
| ErhI | CCWWGG | 4 cut(s) | 1396, 1915, 2052, 2169 |
| Esp3I | CGTCTC | 1 cut(s) | 1219 |
| FaeI | CATG | 9 cut(s) | 519, 800, 983, 1091, 1294, 1625, 1890, 1958, 2173 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1632, 1664 |
| FaqI | GGGAC | 2 cut(s) | 1078, 1224 |
| FatI | CATG | 9 cut(s) | 515, 796, 979, 1087, 1290, 1621, 1886, 1954, 2169 |
| FauI | CCCGC | 2 cut(s) | 448, 1266 |
| FblI | GTMKAC | 2 cut(s) | 219, 1898 |
| Fnu4HI | GCNGC | 9 cut(s) | 107, 474, 513, 804, 857, 1344, 1415, 1674, 2112 |
| FokI | GGATG | 8 cut(s) | 371, 512, 1154, 1446, 1508, 1509, 1799, 2143 |
| FriOI | GRGCYC | 3 cut(s) | 423, 836, 1095 |
| Fsp4HI | GCNGC | 9 cut(s) | 107, 474, 513, 804, 857, 1344, 1415, 1674, 2112 |
| FspBI | CTAG | 3 cut(s) | 1469, 2045, 2105 |
| GlaI | GCGC | 2 cut(s) | 8, 807 |
| GluI | GCNGC | 9 cut(s) | 107, 474, 513, 804, 857, 1344, 1415, 1674, 2112 |
| GsaI | CCCAGC | 1 cut(s) | 1725 |
| GsuI | CTGGAG | 4 cut(s) | 773, 1127, 1929, 1953 |
| HaeIII | GGCC | 8 cut(s) | 241, 255, 404, 626, 842, 1191, 1914, 2016 |
| HapII | CCGG | 1 cut(s) | 1411 |
| HgaI | GACGC | 3 cut(s) | 172, 1037, 1236 |
| HhaI | GCGC | 2 cut(s) | 9, 808 |
| Hin1I | GRCGYC | 3 cut(s) | 216, 1228, 1754 |
| Hin1II | CATG | 9 cut(s) | 519, 800, 983, 1091, 1294, 1625, 1890, 1958, 2173 |
| Hin6I | GCGC | 2 cut(s) | 7, 806 |
| HinP1I | GCGC | 2 cut(s) | 7, 806 |
| HincII | GTYRAC | 5 cut(s) | 220, 312, 577, 1147, 1381 |
| HindII | GTYRAC | 5 cut(s) | 220, 312, 577, 1147, 1381 |
| HinfI | GANTC | 4 cut(s) | 78, 119, 308, 2123 |
| HpaI | GTTAAC | 2 cut(s) | 577, 1381 |
| HpaII | CCGG | 1 cut(s) | 1411 |
| HphI | GGTGA | 2 cut(s) | 1843, 2041 |
| Hpy188III | TCNNGA | 8 cut(s) | 14, 75, 85, 497, 643, 822, 1652, 1955 |
| HpyAV | CCTTC | 7 cut(s) | 73, 133, 139, 408, 982, 1716, 2141 |
| HpyCH4III | ACNGT | 7 cut(s) | 908, 1391, 1487, 1583, 1617, 1945, 2062 |
| HpyCH4IV | ACGT | 4 cut(s) | 216, 943, 1754, 2073 |
| HpyF3I | CTNAG | 4 cut(s) | 495, 1372, 1683, 1827 |
| HpySE526I | ACGT | 4 cut(s) | 216, 943, 1754, 2073 |
| Hsp92I | GRCGYC | 3 cut(s) | 216, 1228, 1754 |
| Hsp92II | CATG | 9 cut(s) | 519, 800, 983, 1091, 1294, 1625, 1890, 1958, 2173 |
| HspAI | GCGC | 2 cut(s) | 7, 806 |
| KspAI | GTTAAC | 2 cut(s) | 577, 1381 |
| Kzo9I | GATC | 7 cut(s) | 451, 809, 925, 1123, 1419, 1981, 1996 |
| LmnI | GCTCC | 6 cut(s) | 49, 418, 426, 442, 614, 1934 |
| Lsp1109I | GCAGC | 5 cut(s) | 460, 790, 1355, 1685, 2098 |
| LweI | GCATC | 4 cut(s) | 1107, 1300, 1735, 2098 |
| MaeI | CTAG | 3 cut(s) | 1469, 2045, 2105 |
| MaeII | ACGT | 4 cut(s) | 216, 943, 1754, 2073 |
| MaeIII | GTNAC | 8 cut(s) | 490, 1518, 1589, 1627, 1798, 1831, 2029, 2047 |
| MalI | GATC | 7 cut(s) | 453, 811, 927, 1125, 1421, 1983, 1998 |
| MboI | GATC | 7 cut(s) | 451, 809, 925, 1123, 1419, 1981, 1996 |
| MfeI | CAATTG | 1 cut(s) | 114 |
| MflI | RGATCY | 2 cut(s) | 1123, 1419 |
| MhlI | GDGCHC | 4 cut(s) | 423, 773, 836, 1095 |
| MlsI | TGGCCA | 2 cut(s) | 842, 2016 |
| MluCI | AATT | 6 cut(s) | 114, 189, 827, 933, 1566, 1977 |
| MluNI | TGGCCA | 2 cut(s) | 842, 2016 |
| MlyI | GAGTC | 3 cut(s) | 87, 128, 317 |
| MmeI | TCCRAC | 5 cut(s) | 57, 183, 189, 330, 1449 |
| Mox20I | TGGCCA | 2 cut(s) | 842, 2016 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1701 |
| MscI | TGGCCA | 2 cut(s) | 842, 2016 |
| MseI | TTAA | 8 cut(s) | 192, 576, 867, 1151, 1163, 1380, 1578, 2203 |
| Msp20I | TGGCCA | 2 cut(s) | 842, 2016 |
| MspA1I | CMGCKG | 3 cut(s) | 443, 565, 1273 |
| MspI | CCGG | 1 cut(s) | 1411 |
| MspR9I | CCNGG | 4 cut(s) | 252, 701, 1411, 2120 |
| MunI | CAATTG | 1 cut(s) | 114 |
| Mva1269I | GAATGC | 1 cut(s) | 52 |
| MvaI | CCWGG | 3 cut(s) | 252, 701, 2120 |
| MvnI | CGCG | 3 cut(s) | 9, 512, 808 |
| NciI | CCSGG | 1 cut(s) | 1411 |
| NcoI | CCATGG | 1 cut(s) | 2169 |
| NdeII | GATC | 7 cut(s) | 451, 809, 925, 1123, 1419, 1981, 1996 |
| NlaIII | CATG | 9 cut(s) | 519, 800, 983, 1091, 1294, 1625, 1890, 1958, 2173 |
| NlaIV | GGNNCC | 5 cut(s) | 438, 616, 705, 770, 1212 |
| NmuCI | GTSAC | 5 cut(s) | 490, 1589, 1627, 1831, 2047 |
| NspI | RCATGY | 2 cut(s) | 519, 1890 |
| NspV | TTCGAA | 1 cut(s) | 24 |
| PaeI | GCATGC | 1 cut(s) | 1890 |
| PaeR7I | CTCGAG | 1 cut(s) | 75 |
| PagI | TCATGA | 1 cut(s) | 1954 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 21, 30, 216, 219, 282 |
| PctI | GAATGC | 1 cut(s) | 52 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1701 |
| PfeI | GAWTC | 1 cut(s) | 2123 |
| PflFI | GACNNNGTC | 1 cut(s) | 215 |
| PfoI | TCCNGGA | 1 cut(s) | 2118 |
| PkrI | GCNGC | 9 cut(s) | 108, 475, 514, 805, 858, 1345, 1416, 1675, 2113 |
| PleI | GAGTC | 3 cut(s) | 86, 127, 316 |
| PpsI | GAGTC | 3 cut(s) | 86, 127, 316 |
| PshAI | GACNNNNGTC | 1 cut(s) | 702 |
| Psp124BI | GAGCTC | 3 cut(s) | 423, 836, 1095 |
| Psp1406I | AACGTT | 2 cut(s) | 943, 2073 |
| Psp6I | CCWGG | 3 cut(s) | 250, 699, 2118 |
| PspFI | CCCAGC | 1 cut(s) | 1721 |
| PspGI | CCWGG | 3 cut(s) | 250, 699, 2118 |
| PspN4I | GGNNCC | 5 cut(s) | 438, 616, 705, 770, 1212 |
| PspPI | GGNCC | 3 cut(s) | 240, 704, 1211 |
| PstI | CTGCAG | 1 cut(s) | 2116 |
| PsuI | RGATCY | 2 cut(s) | 1123, 1419 |
| PsyI | GACNNNGTC | 1 cut(s) | 215 |
| PvuII | CAGCTG | 1 cut(s) | 565 |
| RsaI | GTAC | 3 cut(s) | 1552, 1825, 2059 |
| RsaNI | GTAC | 3 cut(s) | 1551, 1824, 2058 |
| SacI | GAGCTC | 3 cut(s) | 423, 836, 1095 |
| SalI | GTCGAC | 1 cut(s) | 218 |
| SaqAI | TTAA | 8 cut(s) | 192, 576, 867, 1151, 1163, 1380, 1578, 2203 |
| SatI | GCNGC | 9 cut(s) | 107, 474, 513, 804, 857, 1344, 1415, 1674, 2112 |
| Sau3AI | GATC | 7 cut(s) | 451, 809, 925, 1123, 1419, 1981, 1996 |
| Sau96I | GGNCC | 3 cut(s) | 240, 704, 1211 |
| ScaI | AGTACT | 1 cut(s) | 1825 |
| SchI | GAGTC | 3 cut(s) | 87, 128, 317 |
| ScrFI | CCNGG | 4 cut(s) | 252, 701, 1411, 2120 |
| SduI | GDGCHC | 4 cut(s) | 423, 773, 836, 1095 |
| SfaNI | GCATC | 4 cut(s) | 1107, 1300, 1735, 2098 |
| SfcI | CTRYAG | 3 cut(s) | 1003, 1944, 2112 |
| Sfr274I | CTCGAG | 1 cut(s) | 75 |
| SfuI | TTCGAA | 1 cut(s) | 24 |
| SgrDI | CGTCGACG | 1 cut(s) | 218 |
| SinI | GGWCC | 2 cut(s) | 704, 1211 |
| SlaI | CTCGAG | 1 cut(s) | 75 |
| SmlI | CTYRAG | 4 cut(s) | 75, 83, 409, 551 |
| SmoI | CTYRAG | 4 cut(s) | 75, 83, 409, 551 |
| SpeI | ACTAGT | 1 cut(s) | 1468 |
| SphI | GCATGC | 1 cut(s) | 1890 |
| Sse9I | AATT | 6 cut(s) | 114, 189, 827, 933, 1566, 1977 |
| SsiI | CCGC | 7 cut(s) | 9, 107, 441, 512, 857, 1273, 1414 |
| SspMI | CTAG | 3 cut(s) | 1469, 2045, 2105 |
| SstI | GAGCTC | 3 cut(s) | 423, 836, 1095 |
| StyD4I | CCNGG | 4 cut(s) | 250, 699, 1409, 2118 |
| StyI | CCWWGG | 4 cut(s) | 1396, 1915, 2052, 2169 |
| TaaI | ACNGT | 7 cut(s) | 908, 1391, 1487, 1583, 1617, 1945, 2062 |
| TaiI | ACGT | 4 cut(s) | 219, 946, 1757, 2076 |
| TasI | AATT | 6 cut(s) | 114, 189, 827, 933, 1566, 1977 |
| TatI | WGTACW | 2 cut(s) | 1550, 1823 |
| TauI | GCSGC | 4 cut(s) | 109, 515, 859, 1417 |
| TfiI | GAWTC | 1 cut(s) | 2123 |
| Tru1I | TTAA | 8 cut(s) | 192, 576, 867, 1151, 1163, 1380, 1578, 2203 |
| Tru9I | TTAA | 8 cut(s) | 192, 576, 867, 1151, 1163, 1380, 1578, 2203 |
| TscAI | CASTG | 6 cut(s) | 616, 913, 1492, 1636, 1716, 1754 |
| TseFI | GTSAC | 5 cut(s) | 490, 1589, 1627, 1831, 2047 |
| TseI | GCWGC | 5 cut(s) | 473, 803, 1343, 1673, 2111 |
| Tsp45I | GTSAC | 5 cut(s) | 490, 1589, 1627, 1831, 2047 |
| TspDTI | ATGAA | 5 cut(s) | 17, 1211, 1943, 2082, 2160 |
| TspRI | CASTG | 6 cut(s) | 616, 913, 1492, 1636, 1716, 1754 |
| Tth111I | GACNNNGTC | 1 cut(s) | 215 |
| VpaK11BI | GGWCC | 2 cut(s) | 704, 1211 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 481 |
| XapI | RAATTY | 1 cut(s) | 933 |
| XceI | RCATGY | 2 cut(s) | 519, 1890 |
| XhoI | CTCGAG | 1 cut(s) | 75 |
| XmiI | GTMKAC | 2 cut(s) | 219, 1898 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1701 |
| XspI | CTAG | 3 cut(s) | 1469, 2045, 2105 |
| ZraI | GACGTC | 2 cut(s) | 217, 1755 |
| ZrmI | AGTACT | 1 cut(s) | 1825 |