Rmu_sc0003637.1_g000018

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD H box

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003637.1
OG0017196
Physical Location & Seq
Forward (+)
74716 .. 79754
5039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003637.1_g000018.1.cds

Sequence Viewer

Length: 2220 bp
atgaagcgcagcctcgaccatttcgaaatctccgacgacgagtgggaggagcactcctcctccttcaagccctcccgcgtcctgaagaagtcgaggacgccgacgccgccggcaatcgagtccttcgcctaccggaagcgccgagtctccgacgacgactccgattgcgtcgagattaaggacgattcggacgacgattgcgtggagatcaagaacgatttggaggacgacgacgtcgtcgaggaggtccgccggccggtgacgcgtggacggaggtttgtggtcgaggacgaggatagcgacggggattgggcggagttggagtcgacgagtgaggaggaggaggaggaggtcgaggaggaggcggaggacgatgacgtcgtcgggagagctttgcagaagtgcgccaaaatatcggcggatttgaagagggagctccatggttcgtcggcaccgacggcgagtgatcggtatgctgaagtggacgcttcctgtgtgaggattgtcactcaggatgacattaatgaggcatgtaggtcagatgagtctgattttctacctgttctcaagccataccagctggttggtgttaactttcttcttctgttgtatcgaaagggtattggaggagctattttggccgatgagatgggtctagggaagaccattcaggccgtaacgtatttgatgctgttgaaacatttacacaatgacccgggtccccatttgattgtatgtcctgcttcagttttggaaaactgggaaagagaacttaagaagtggtgcccatcattttctgttctccagtatcatggggctgcgcgatctgcatattcaagggagttgacctcattggccaaagctggaatgccgcctccttttaatgttattcttgtgtgctattcactatttgaaagacacagtgcacagcagaaagatgatcgtaagattctgaaacgttggcagtggagttgtgttcttatggatgaggctcatgctctgaaggataaaaacagctacaggtggaagaacctaatgtctgttgcaagaagtgcaaaccagcgtctaatgctgacaggaacacctctacaaaatgatttacatgagctatggtcaatgctggagtttattatgccagatctttttactactgaggatgttgacttaaaaaagctattaagtgctgctgatacagatttgattagtcggatgaaatccatattgggaccatttattttgagacgtttgaaatctgatgtaatgcaacaacttgttcctaaaatacaacgggtggagtatgttatcatggataaggaacaaaatgatgcctacaaagaagccattgaggagtatcgtgcagcttcacgagctcgtattgcaaaaacttcacgggctaattcaaacagtatcgttggagttcttcctcggcggcaaatctcgaactattttgttcagtttcgtaagatcgcaaaccatcctttactagtaaggcgtatttacagtgatgaggatgtagttcgttttgccaggaagttacatccaatgggtgcatttggctttgaatgtactttagacagagtaattgaggaaatgaaaagttttaatgacttctctatccaccggcttttactatcttatgatgtcactgataagaagggatgtcttccagatgaagatgttatgctttctgcaaagtctcaggcattagctgaacttcttcctacactgaagcaagctgggcatcgagttctgatatttagccagtggacgtcaatgcttgatatcttggagtgggctttggacgtgataggggttacatacagacgacttgatggaagtactcaggtaacagaaagacagacgatagtcgatacattcaataacgacacttctatatttgcatgcttgctgtcaacaagagctgggggccagggtttgaacttaactggagctgatactgtagtcattcacgatatggatttcaacccacaaattgatcgacaggccgaggatcgctgtcatcgcattggccaaacaaagcctgttaccatatacaggctagtgactaagggtacagttgatgaaaatgtttacgagattgcaaagaggaagttggtgcttgatgccgctgtcctcgagtctggcttagagatggaaaatgaaggcgaaacatctgagaagactatgggggagatattatcaaaacttttgctgggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000228 GO:0000729 GO:0000785 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006325 GO:0006338 GO:0006355 GO:0006464 GO:0006476 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0008152 GO:0009117 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010225 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016363 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022607 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0033554 GO:0034399 GO:0034641 GO:0034644 GO:0035601 GO:0035861 GO:0036211 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043596 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051259 GO:0051260 GO:0051276 GO:0051304 GO:0051716 GO:0055086 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070932 GO:0070933 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0098732 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04550 map04550
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

739

Amino Acids

84.12

Weight (kDa)

5.15

Isoelectric Point (pI)

42.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02090
fragaria_vesca FvH4_4g36060
malus_domestica MD16G1009400.v1.1
prunus_persica Prupe.1G341200_v2.0.a1 Prupe.1G341200_v2.0.a1
pyrus_communis pycom16g00910
rosa_chinensis RchiOBHm_Chr4g0445681
rosa_laevigata RLG00000005717
rosa_multiflora Rmu_sc0003637.1_g000018
rosa_roxburghii Rroxscaffold_5G00386160
rosa_rugosa Rorug04G0364700
rosa_samantha Rh4AG425600
rosa_wichuraiana Rw4G036460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 233, 236, 377
AatII GACGTC 3 cut(s) 237, 381, 1772
AccB1I GGYRCC 2 cut(s) 451, 783
AccI GTMKAC 1 cut(s) 326
AccII CGCG 3 cut(s) 78, 265, 823
AciI CCGC 9 cut(s) 76, 107, 250, 314, 365, 419, 872, 1429, 2127
AclI AACGTT 1 cut(s) 958
AclWI GGATC 1 cut(s) 2019
AcoI YGGCCR 4 cut(s) 254, 639, 855, 2029
AcuI CTGAAG 5 cut(s) 104, 498, 729, 1022, 1748
AcyI GRCGYC 5 cut(s) 98, 104, 234, 378, 1769
AfaI GTAC 3 cut(s) 1567, 1840, 2074
AfiI CCNNNNNNNGG 3 cut(s) 256, 498, 2055
AflII CTTAAG 1 cut(s) 773
AflIII ACRYGT 1 cut(s) 263
AhlI ACTAGT 1 cut(s) 1483
AjiI CACGTC 1 cut(s) 1804
AjnI CCWGG 2 cut(s) 1526, 1929
AjuI GAANNNNNNNTTGG 2 cut(s) 1205, 1237
Alw21I GWGCWC 4 cut(s) 54, 438, 928, 1372
Alw26I GTCTC 3 cut(s) 151, 1234, 1701
Alw44I GTGCAC 1 cut(s) 924
AlwI GGATC 1 cut(s) 2019
Ama87I CYCGRG 2 cut(s) 715, 2135
AoxI GGCC 7 cut(s) 254, 639, 672, 855, 1927, 2004, 2029
ApaLI GTGCAC 1 cut(s) 924
ApeKI GCWGC 4 cut(s) 9, 818, 1184, 1358
AseI ATTAAT 1 cut(s) 522
Asp700I GAANNNNTTC 1 cut(s) 1716
AspLEI GCGC 4 cut(s) 9, 141, 407, 823
AspS9I GGNCC 4 cut(s) 247, 719, 1226, 1927
AsuC2I CCSGG 2 cut(s) 716, 717
AsuHPI GGTGA 1 cut(s) 271
AsuII TTCGAA 1 cut(s) 24
AvaI CYCGRG 2 cut(s) 715, 2135
AvaII GGWCC 3 cut(s) 247, 719, 1226
BaeGI GKGCMC 2 cut(s) 788, 928
BaeI ACNNNNGTAYC 2 cut(s) 1947, 1980
BalI TGGCCA 2 cut(s) 857, 2031
BanI GGYRCC 2 cut(s) 451, 783
BanII GRGCYC 2 cut(s) 438, 1372
BauI CACGAG 1 cut(s) 1365
BbsI GAAGAC 3 cut(s) 668, 1655, 2186
Bbv12I GWGCWC 4 cut(s) 54, 438, 928, 1372
BbvI GCAGC 4 cut(s) 21, 805, 1171, 1370
BccI CCATC 5 cut(s) 643, 796, 1482, 1826, 2146
BceAI ACGGC 2 cut(s) 474, 659
BciT130I CCWGG 2 cut(s) 1528, 1931
BcnI CCSGG 2 cut(s) 716, 717
BcoDI GTCTC 3 cut(s) 151, 1234, 1701
BcuI ACTAGT 1 cut(s) 1483
BfaI CTAG 3 cut(s) 656, 1484, 2060
BfmI CTRYAG 2 cut(s) 1018, 1959
BfoI RGCGCY 1 cut(s) 142
BfrI CTTAAG 1 cut(s) 773
BglII AGATCT 1 cut(s) 1138
BisI GCNGC 8 cut(s) 10, 107, 819, 872, 1185, 1359, 1430, 2127
BlsI GCNGC 8 cut(s) 11, 108, 820, 873, 1186, 1360, 1431, 2128
BmcAI AGTACT 1 cut(s) 1840
Bme1390I CCNGG 4 cut(s) 716, 717, 1528, 1931
Bme18I GGWCC 3 cut(s) 247, 719, 1226
BmeT110I CYCGRG 2 cut(s) 715, 2135
BmgBI CACGTC 1 cut(s) 1804
BmgT120I GGNCC 4 cut(s) 247, 719, 1226, 1927
BmiI GGNNCC 6 cut(s) 453, 720, 721, 785, 1227, 1928
BmrFI CCNGG 4 cut(s) 716, 717, 1528, 1931
BmrI ACTGGG 1 cut(s) 769
BmsI GCATC 4 cut(s) 678, 1315, 1750, 2113
BmuI ACTGGG 1 cut(s) 769
BoxI GACNNNNGTC 2 cut(s) 717, 1865
BpiI GAAGAC 3 cut(s) 668, 1655, 2186
BplI GAGNNNNNCTC 6 cut(s) 38, 70, 41, 73, 833, 865
BpmI CTGGAG 3 cut(s) 788, 1142, 1968
Bpu14I TTCGAA 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 551
BpuMI CCSGG 2 cut(s) 716, 717
BsaHI GRCGYC 5 cut(s) 98, 104, 234, 378, 1769
BsaJI CCNNGG 5 cut(s) 439, 715, 1424, 1930, 2007
BsaWI WCCGGW 1 cut(s) 132
BsaXI ACNNNNNCTCC 6 cut(s) 44, 74, 143, 173, 308, 338
Bsc4I CCNNNNNNNGG 3 cut(s) 256, 498, 2055
Bse118I RCCGGY 4 cut(s) 109, 252, 256, 1620
Bse1I ACTGG 4 cut(s) 764, 805, 1762, 1951
BseBI CCWGG 2 cut(s) 1528, 1931
BseDI CCNNGG 5 cut(s) 439, 715, 1424, 1930, 2007
BseGI GGATG 8 cut(s) 520, 991, 1162, 1215, 1474, 1516, 1537, 1664
BseLI CCNNNNNNNGG 3 cut(s) 256, 498, 2055
BseMII CTCAG 5 cut(s) 524, 1143, 1712, 1856, 2166
BseNI ACTGG 4 cut(s) 764, 805, 1762, 1951
BseSI GKGCMC 2 cut(s) 788, 928
BseX3I CGGCCG 1 cut(s) 254
BseXI GCAGC 4 cut(s) 21, 805, 1171, 1370
BseYI CCCAGC 3 cut(s) 1736, 1922, 2212
BsgI GTGCAG 1 cut(s) 1377
Bsh1236I CGCG 3 cut(s) 78, 265, 823
Bsh1285I CGRYCG 1 cut(s) 257
BshFI GGCC 7 cut(s) 256, 641, 674, 857, 1929, 2006, 2031
BshNI GGYRCC 2 cut(s) 451, 783
BsiEI CGRYCG 1 cut(s) 257
BsiHKAI GWGCWC 4 cut(s) 54, 438, 928, 1372
BsiHKCI CYCGRG 2 cut(s) 715, 2135
BsiSI CCGG 6 cut(s) 110, 133, 253, 257, 716, 1621
BslFI GGGAC 2 cut(s) 705, 1239
BslI CCNNNNNNNGG 3 cut(s) 256, 498, 2055
BsmAI GTCTC 3 cut(s) 151, 1234, 1701
BsmBI CGTCTC 1 cut(s) 1234
BsmFI GGGAC 2 cut(s) 705, 1239
BsmI GAATGC 1 cut(s) 873
BsnI GGCC 7 cut(s) 256, 641, 674, 857, 1929, 2006, 2031
BsoBI CYCGRG 2 cut(s) 715, 2135
Bsp119I TTCGAA 1 cut(s) 24
Bsp1286I GDGCHC 5 cut(s) 54, 438, 788, 928, 1372
Bsp143I GATC 8 cut(s) 207, 466, 824, 940, 1138, 1464, 1996, 2011
Bsp19I CCATGG 1 cut(s) 439
BspACI CCGC 9 cut(s) 76, 107, 250, 314, 365, 419, 872, 1429, 2127
BspANI GGCC 7 cut(s) 256, 641, 674, 857, 1929, 2006, 2031
BspCNI CTCAG 5 cut(s) 523, 1144, 1711, 1855, 2167
BspFNI CGCG 3 cut(s) 78, 265, 823
BspLI GGNNCC 6 cut(s) 453, 720, 721, 785, 1227, 1928
BspPI GGATC 1 cut(s) 2019
BspT104I TTCGAA 1 cut(s) 24
BspT107I GGYRCC 2 cut(s) 451, 783
BspTI CTTAAG 1 cut(s) 773
BsrFI RCCGGY 4 cut(s) 109, 252, 256, 1620
BsrI ACTGG 4 cut(s) 764, 805, 1762, 1951
BssAI RCCGGY 4 cut(s) 109, 252, 256, 1620
BssECI CCNNGG 5 cut(s) 439, 715, 1424, 1930, 2007
BssMI GATC 8 cut(s) 207, 466, 824, 940, 1138, 1464, 1996, 2011
BssNI GRCGYC 5 cut(s) 98, 104, 234, 378, 1769
BssSI CACGAG 1 cut(s) 1365
BssT1I CCWWGG 1 cut(s) 439
Bst2BI CACGAG 1 cut(s) 1365
Bst2UI CCWGG 2 cut(s) 1528, 1931
Bst4CI ACNGT 5 cut(s) 923, 1406, 1502, 1960, 2077
Bst6I CTCTTC 1 cut(s) 422
BstACI GRCGYC 5 cut(s) 98, 104, 234, 378, 1769
BstAFI CTTAAG 1 cut(s) 773
BstAPI GCANNNNNTGC 1 cut(s) 1052
BstBI TTCGAA 1 cut(s) 24
BstC8I GCNNGC 5 cut(s) 111, 254, 1734, 1903, 1907
BstDEI CTNAG 7 cut(s) 510, 1152, 1698, 1842, 2067, 2146, 2175
BstDSI CCRYGG 1 cut(s) 439
BstENI CCTNNNNNAGG 1 cut(s) 496
BstF5I GGATG 8 cut(s) 520, 991, 1162, 1215, 1474, 1516, 1537, 1664
BstFNI CGCG 3 cut(s) 78, 265, 823
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 4 cut(s) 9, 141, 407, 823
BstKTI GATC 8 cut(s) 210, 469, 827, 943, 1141, 1467, 1999, 2014
BstMAI GTCTC 3 cut(s) 151, 1234, 1701
BstMBI GATC 8 cut(s) 207, 466, 824, 940, 1138, 1464, 1996, 2011
BstMCI CGRYCG 1 cut(s) 257
BstNI CCWGG 2 cut(s) 1528, 1931
BstNSI RCATGY 2 cut(s) 534, 1905
BstPAI GACNNNNGTC 2 cut(s) 717, 1865
BstSCI CCNGG 4 cut(s) 714, 715, 1526, 1929
BstSFI CTRYAG 2 cut(s) 1018, 1959
BstSLI GKGCMC 2 cut(s) 788, 928
BstUI CGCG 3 cut(s) 78, 265, 823
BstV1I GCAGC 4 cut(s) 21, 805, 1171, 1370
BstV2I GAAGAC 3 cut(s) 668, 1655, 2186
BstX2I RGATCY 1 cut(s) 1138
BstXI CCANNNNNNTGG 2 cut(s) 584, 812
BstYI RGATCY 1 cut(s) 1138
BstZI CGGCCG 1 cut(s) 254
BsuRI GGCC 7 cut(s) 256, 641, 674, 857, 1929, 2006, 2031
BtgI CCRYGG 1 cut(s) 439
BtgZI GCGATG 1 cut(s) 2006
BtrI CACGTC 1 cut(s) 1804
BtsCI GGATG 8 cut(s) 520, 991, 1162, 1215, 1474, 1516, 1537, 1664
BtsI GCAGTG 1 cut(s) 971
BtsIMutI CAGTG 6 cut(s) 928, 971, 1507, 1644, 1724, 1769
Cac8I GCNNGC 5 cut(s) 111, 254, 1734, 1903, 1907
CfoI GCGC 4 cut(s) 9, 141, 407, 823
Cfr10I RCCGGY 4 cut(s) 109, 252, 256, 1620
Cfr13I GGNCC 4 cut(s) 247, 719, 1226, 1927
Cfr9I CCCGGG 1 cut(s) 715
CseI GACGC 7 cut(s) 67, 106, 112, 157, 271, 494, 1052
Csp6I GTAC 3 cut(s) 1566, 1839, 2073
CviAII CATG 7 cut(s) 440, 531, 812, 995, 1103, 1306, 1902
CviQI GTAC 3 cut(s) 1566, 1839, 2073
DdeI CTNAG 7 cut(s) 510, 1152, 1698, 1842, 2067, 2146, 2175
DpnI GATC 8 cut(s) 209, 468, 826, 942, 1140, 1466, 1998, 2013
DpnII GATC 8 cut(s) 207, 466, 824, 940, 1138, 1464, 1996, 2011
DrdI GACNNNNNNGTC 3 cut(s) 233, 236, 377
DseDI GACNNNNNNGTC 3 cut(s) 233, 236, 377
EaeI YGGCCR 4 cut(s) 254, 639, 855, 2029
EagI CGGCCG 1 cut(s) 254
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
EciI GGCGGA 4 cut(s) 239, 329, 380, 434
Ecl136II GAGCTC 2 cut(s) 436, 1370
EclXI CGGCCG 1 cut(s) 254
Eco130I CCWWGG 1 cut(s) 439
Eco24I GRGCYC 2 cut(s) 438, 1372
Eco32I GATATC 1 cut(s) 1783
Eco47I GGWCC 3 cut(s) 247, 719, 1226
Eco52I CGGCCG 1 cut(s) 254
Eco53kI GAGCTC 2 cut(s) 436, 1370
Eco57I CTGAAG 5 cut(s) 104, 498, 729, 1022, 1748
Eco88I CYCGRG 2 cut(s) 715, 2135
EcoICRI GAGCTC 2 cut(s) 436, 1370
EcoNI CCTNNNNNAGG 1 cut(s) 496
EcoO109I RGGNCCY 1 cut(s) 719
EcoRII CCWGG 2 cut(s) 1526, 1929
EcoRV GATATC 1 cut(s) 1783
EcoT14I CCWWGG 1 cut(s) 439
EcoT38I GRGCYC 2 cut(s) 438, 1372
ErhI CCWWGG 1 cut(s) 439
Esp3I CGTCTC 1 cut(s) 1234
FaeI CATG 7 cut(s) 443, 534, 815, 998, 1106, 1309, 1905
FaqI GGGAC 2 cut(s) 705, 1239
FatI CATG 7 cut(s) 439, 530, 811, 994, 1102, 1305, 1901
FauI CCCGC 1 cut(s) 83
FblI GTMKAC 1 cut(s) 326
Fnu4HI GCNGC 8 cut(s) 10, 107, 819, 872, 1185, 1359, 1430, 2127
FokI GGATG 8 cut(s) 527, 998, 1169, 1222, 1461, 1523, 1524, 1671
FriOI GRGCYC 2 cut(s) 438, 1372
Fsp4HI GCNGC 8 cut(s) 10, 107, 819, 872, 1185, 1359, 1430, 2127
FspBI CTAG 3 cut(s) 656, 1484, 2060
GlaI GCGC 4 cut(s) 8, 140, 406, 822
GluI GCNGC 8 cut(s) 10, 107, 819, 872, 1185, 1359, 1430, 2127
GsaI CCCAGC 3 cut(s) 1740, 1926, 2216
GsuI CTGGAG 3 cut(s) 788, 1142, 1968
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 7 cut(s) 256, 641, 674, 857, 1929, 2006, 2031
HapII CCGG 6 cut(s) 110, 133, 253, 257, 716, 1621
HgaI GACGC 7 cut(s) 67, 106, 112, 157, 271, 494, 1052
HhaI GCGC 4 cut(s) 9, 141, 407, 823
Hin1I GRCGYC 5 cut(s) 98, 104, 234, 378, 1769
Hin1II CATG 7 cut(s) 443, 534, 815, 998, 1106, 1309, 1905
Hin6I GCGC 4 cut(s) 7, 139, 405, 821
HinP1I GCGC 4 cut(s) 7, 139, 405, 821
HincII GTYRAC 5 cut(s) 327, 592, 846, 1162, 1914
HindII GTYRAC 5 cut(s) 327, 592, 846, 1162, 1914
HinfI GANTC 8 cut(s) 119, 144, 158, 185, 323, 545, 949, 2138
HpaI GTTAAC 1 cut(s) 592
HpaII CCGG 6 cut(s) 110, 133, 253, 257, 716, 1621
HphI GGTGA 1 cut(s) 271
Hpy188III TCNNGA 9 cut(s) 82, 172, 211, 385, 512, 1365, 1438, 1667, 1970
HpyAV CCTTC 5 cut(s) 73, 133, 997, 1648, 2156
HpyCH4III ACNGT 5 cut(s) 923, 1406, 1502, 1960, 2077
HpyCH4IV ACGT 7 cut(s) 234, 378, 680, 958, 1243, 1769, 1803
HpyF3I CTNAG 7 cut(s) 510, 1152, 1698, 1842, 2067, 2146, 2175
HpySE526I ACGT 7 cut(s) 234, 378, 680, 958, 1243, 1769, 1803
Hsp92I GRCGYC 5 cut(s) 98, 104, 234, 378, 1769
Hsp92II CATG 7 cut(s) 443, 534, 815, 998, 1106, 1309, 1905
HspAI GCGC 4 cut(s) 7, 139, 405, 821
KflI GGGWCCC 1 cut(s) 719
KroI GCCGGC 2 cut(s) 109, 252
KroNI GCCGGC 2 cut(s) 111, 254
KspAI GTTAAC 1 cut(s) 592
Kzo9I GATC 8 cut(s) 207, 466, 824, 940, 1138, 1464, 1996, 2011
LmnI GCTCC 5 cut(s) 49, 433, 441, 629, 1949
Lsp1109I GCAGC 4 cut(s) 21, 805, 1171, 1370
LweI GCATC 4 cut(s) 678, 1315, 1750, 2113
MaeI CTAG 3 cut(s) 656, 1484, 2060
MaeII ACGT 7 cut(s) 234, 378, 680, 958, 1243, 1769, 1803
MaeIII GTNAC 9 cut(s) 259, 505, 676, 1533, 1642, 1813, 1846, 2044, 2062
MalI GATC 8 cut(s) 209, 468, 826, 942, 1140, 1466, 1998, 2013
MboI GATC 8 cut(s) 207, 466, 824, 940, 1138, 1464, 1996, 2011
MflI RGATCY 1 cut(s) 1138
MhlI GDGCHC 5 cut(s) 54, 438, 788, 928, 1372
MlsI TGGCCA 2 cut(s) 857, 2031
MluCI AATT 3 cut(s) 1396, 1581, 1992
MluI ACGCGT 1 cut(s) 263
MluNI TGGCCA 2 cut(s) 857, 2031
MlyI GAGTC 6 cut(s) 128, 152, 153, 332, 554, 2147
MmeI TCCRAC 5 cut(s) 57, 174, 300, 1187, 1393
Mox20I TGGCCA 2 cut(s) 857, 2031
MroNI GCCGGC 2 cut(s) 109, 252
MroXI GAANNNNTTC 1 cut(s) 1716
MscI TGGCCA 2 cut(s) 857, 2031
MseI TTAA 9 cut(s) 177, 522, 591, 774, 882, 1166, 1178, 1602, 1943
Msp20I TGGCCA 2 cut(s) 857, 2031
MspA1I CMGCKG 2 cut(s) 580, 2129
MspCI CTTAAG 1 cut(s) 773
MspI CCGG 6 cut(s) 110, 133, 253, 257, 716, 1621
MspR9I CCNGG 4 cut(s) 716, 717, 1528, 1931
Mva1269I GAATGC 1 cut(s) 873
MvaI CCWGG 2 cut(s) 1528, 1931
MvnI CGCG 3 cut(s) 78, 265, 823
NaeI GCCGGC 2 cut(s) 111, 254
NciI CCSGG 2 cut(s) 716, 717
NcoI CCATGG 1 cut(s) 439
NdeII GATC 8 cut(s) 207, 466, 824, 940, 1138, 1464, 1996, 2011
NgoMIV GCCGGC 2 cut(s) 109, 252
NlaIII CATG 7 cut(s) 443, 534, 815, 998, 1106, 1309, 1905
NlaIV GGNNCC 6 cut(s) 453, 720, 721, 785, 1227, 1928
NmeAIII GCCGAG 3 cut(s) 167, 1405, 2032
NmuCI GTSAC 4 cut(s) 259, 505, 1642, 2062
NspI RCATGY 2 cut(s) 534, 1905
NspV TTCGAA 1 cut(s) 24
PaeI GCATGC 1 cut(s) 1905
PaeR7I CTCGAG 1 cut(s) 2135
PctI GAATGC 1 cut(s) 873
PdiI GCCGGC 2 cut(s) 111, 254
PdmI GAANNNNTTC 1 cut(s) 1716
PfeI GAWTC 2 cut(s) 185, 949
PflFI GACNNNGTC 3 cut(s) 233, 236, 380
PkrI GCNGC 8 cut(s) 11, 108, 820, 873, 1186, 1360, 1431, 2128
PleI GAGTC 6 cut(s) 127, 152, 152, 331, 553, 2146
PpsI GAGTC 6 cut(s) 127, 152, 152, 331, 553, 2146
PpuMI RGGWCCY 1 cut(s) 719
PshAI GACNNNNGTC 2 cut(s) 717, 1865
PshBI ATTAAT 1 cut(s) 522
Psp124BI GAGCTC 2 cut(s) 438, 1372
Psp1406I AACGTT 1 cut(s) 958
Psp5II RGGWCCY 1 cut(s) 719
Psp6I CCWGG 2 cut(s) 1526, 1929
PspFI CCCAGC 3 cut(s) 1736, 1922, 2212
PspGI CCWGG 2 cut(s) 1526, 1929
PspN4I GGNNCC 6 cut(s) 453, 720, 721, 785, 1227, 1928
PspPI GGNCC 4 cut(s) 247, 719, 1226, 1927
PspPPI RGGWCCY 1 cut(s) 719
PspXI VCTCGAGB 1 cut(s) 2135
PsuI RGATCY 1 cut(s) 1138
PsyI GACNNNGTC 3 cut(s) 233, 236, 380
PvuII CAGCTG 1 cut(s) 580
RsaI GTAC 3 cut(s) 1567, 1840, 2074
RsaNI GTAC 3 cut(s) 1566, 1839, 2073
SacI GAGCTC 2 cut(s) 438, 1372
SalI GTCGAC 1 cut(s) 325
SaqAI TTAA 9 cut(s) 177, 522, 591, 774, 882, 1166, 1178, 1602, 1943
SatI GCNGC 8 cut(s) 10, 107, 819, 872, 1185, 1359, 1430, 2127
Sau3AI GATC 8 cut(s) 207, 466, 824, 940, 1138, 1464, 1996, 2011
Sau96I GGNCC 4 cut(s) 247, 719, 1226, 1927
ScaI AGTACT 1 cut(s) 1840
SchI GAGTC 6 cut(s) 128, 152, 153, 332, 554, 2147
ScrFI CCNGG 4 cut(s) 716, 717, 1528, 1931
SduI GDGCHC 5 cut(s) 54, 438, 788, 928, 1372
SfaNI GCATC 4 cut(s) 678, 1315, 1750, 2113
SfcI CTRYAG 2 cut(s) 1018, 1959
Sfr274I CTCGAG 1 cut(s) 2135
SfuI TTCGAA 1 cut(s) 24
SinI GGWCC 3 cut(s) 247, 719, 1226
SlaI CTCGAG 1 cut(s) 2135
SmaI CCCGGG 1 cut(s) 717
SmlI CTYRAG 3 cut(s) 566, 773, 2135
SmoI CTYRAG 3 cut(s) 566, 773, 2135
SpeI ACTAGT 1 cut(s) 1483
SphI GCATGC 1 cut(s) 1905
Sse9I AATT 3 cut(s) 1396, 1581, 1992
SsiI CCGC 9 cut(s) 76, 107, 250, 314, 365, 419, 872, 1429, 2127
SspMI CTAG 3 cut(s) 656, 1484, 2060
SstI GAGCTC 2 cut(s) 438, 1372
StyD4I CCNGG 4 cut(s) 714, 715, 1526, 1929
StyI CCWWGG 1 cut(s) 439
TaaI ACNGT 5 cut(s) 923, 1406, 1502, 1960, 2077
TaiI ACGT 7 cut(s) 237, 381, 683, 961, 1246, 1772, 1806
TasI AATT 3 cut(s) 1396, 1581, 1992
TatI WGTACW 2 cut(s) 1565, 1838
TauI GCSGC 4 cut(s) 109, 874, 1432, 2129
TfiI GAWTC 2 cut(s) 185, 949
Tru1I TTAA 9 cut(s) 177, 522, 591, 774, 882, 1166, 1178, 1602, 1943
Tru9I TTAA 9 cut(s) 177, 522, 591, 774, 882, 1166, 1178, 1602, 1943
TscAI CASTG 6 cut(s) 928, 971, 1507, 1651, 1731, 1769
TseFI GTSAC 4 cut(s) 259, 505, 1642, 2062
TseI GCWGC 4 cut(s) 9, 818, 1184, 1358
Tsp45I GTSAC 4 cut(s) 259, 505, 1642, 2062
TspDTI ATGAA 6 cut(s) 17, 1226, 1607, 1686, 2097, 2175
TspGWI ACGGA 1 cut(s) 286
TspMI CCCGGG 1 cut(s) 715
TspRI CASTG 6 cut(s) 928, 971, 1507, 1651, 1731, 1769
Tth111I GACNNNGTC 3 cut(s) 233, 236, 380
Vha464I CTTAAG 1 cut(s) 773
VneI GTGCAC 1 cut(s) 924
VpaK11BI GGWCC 3 cut(s) 247, 719, 1226
VspI ATTAAT 1 cut(s) 522
XagI CCTNNNNNAGG 1 cut(s) 496
XceI RCATGY 2 cut(s) 534, 1905
XhoI CTCGAG 1 cut(s) 2135
XmaI CCCGGG 1 cut(s) 715
XmiI GTMKAC 1 cut(s) 326
XmnI GAANNNNTTC 1 cut(s) 1716
XspI CTAG 3 cut(s) 656, 1484, 2060
ZraI GACGTC 3 cut(s) 235, 379, 1770
ZrmI AGTACT 1 cut(s) 1840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.