SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD H box
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G02090 |
| fragaria_vesca | FvH4_4g36060 |
| malus_domestica | MD16G1009400.v1.1 |
| prunus_persica | Prupe.1G341200_v2.0.a1 Prupe.1G341200_v2.0.a1 |
| pyrus_communis | pycom16g00910 |
| rosa_chinensis | RchiOBHm_Chr4g0445681 |
| rosa_laevigata | RLG00000005717 |
| rosa_multiflora | Rmu_sc0003637.1_g000018 |
| rosa_roxburghii | Rroxscaffold_5G00386160 |
| rosa_rugosa | Rorug04G0364700 |
| rosa_samantha | Rh4AG425600 |
| rosa_wichuraiana | Rw4G036460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 3 cut(s) | 233, 236, 380 |
| AatII | GACGTC | 3 cut(s) | 237, 384, 1775 |
| AccB1I | GGYRCC | 2 cut(s) | 454, 786 |
| AccI | GTMKAC | 1 cut(s) | 326 |
| AccII | CGCG | 3 cut(s) | 78, 265, 826 |
| AciI | CCGC | 8 cut(s) | 76, 250, 314, 368, 461, 875, 1432, 2130 |
| AclI | AACGTT | 1 cut(s) | 961 |
| AclWI | GGATC | 1 cut(s) | 2022 |
| AcoI | YGGCCR | 4 cut(s) | 254, 642, 858, 2032 |
| AcuI | CTGAAG | 4 cut(s) | 501, 732, 1025, 1751 |
| AcyI | GRCGYC | 6 cut(s) | 98, 104, 234, 381, 455, 1772 |
| AfaI | GTAC | 3 cut(s) | 1570, 1843, 2077 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 256, 310, 501, 2058 |
| AflII | CTTAAG | 1 cut(s) | 776 |
| AflIII | ACRYGT | 1 cut(s) | 263 |
| AhlI | ACTAGT | 1 cut(s) | 1486 |
| AjiI | CACGTC | 1 cut(s) | 1807 |
| AjnI | CCWGG | 2 cut(s) | 1529, 1932 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1208, 1240 |
| Alw21I | GWGCWC | 4 cut(s) | 54, 441, 931, 1375 |
| Alw26I | GTCTC | 3 cut(s) | 151, 1237, 1704 |
| Alw44I | GTGCAC | 1 cut(s) | 927 |
| AlwI | GGATC | 1 cut(s) | 2022 |
| Ama87I | CYCGRG | 2 cut(s) | 718, 2138 |
| AoxI | GGCC | 6 cut(s) | 254, 642, 675, 858, 1930, 2032 |
| ApaLI | GTGCAC | 1 cut(s) | 927 |
| ApeKI | GCWGC | 4 cut(s) | 9, 821, 1187, 1361 |
| AseI | ATTAAT | 1 cut(s) | 525 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1719 |
| AspLEI | GCGC | 5 cut(s) | 9, 141, 410, 457, 826 |
| AspS9I | GGNCC | 4 cut(s) | 247, 722, 1229, 1930 |
| AsuC2I | CCSGG | 4 cut(s) | 110, 305, 719, 720 |
| AsuHPI | GGTGA | 1 cut(s) | 271 |
| AsuII | TTCGAA | 1 cut(s) | 24 |
| AvaI | CYCGRG | 2 cut(s) | 718, 2138 |
| AvaII | GGWCC | 3 cut(s) | 247, 722, 1229 |
| BaeGI | GKGCMC | 2 cut(s) | 791, 931 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1950, 1983 |
| BalI | TGGCCA | 2 cut(s) | 860, 2034 |
| BanI | GGYRCC | 2 cut(s) | 454, 786 |
| BanII | GRGCYC | 2 cut(s) | 441, 1375 |
| BauI | CACGAG | 1 cut(s) | 1368 |
| BbsI | GAAGAC | 3 cut(s) | 671, 1658, 2189 |
| Bbv12I | GWGCWC | 4 cut(s) | 54, 441, 931, 1375 |
| BbvI | GCAGC | 4 cut(s) | 21, 808, 1174, 1373 |
| BccI | CCATC | 5 cut(s) | 646, 799, 1485, 1829, 2149 |
| BceAI | ACGGC | 2 cut(s) | 662, 2117 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 522, 556 |
| BciT130I | CCWGG | 2 cut(s) | 1531, 1934 |
| BcnI | CCSGG | 4 cut(s) | 110, 305, 719, 720 |
| BcoDI | GTCTC | 3 cut(s) | 151, 1237, 1704 |
| BcuI | ACTAGT | 1 cut(s) | 1486 |
| BfaI | CTAG | 3 cut(s) | 659, 1487, 2063 |
| BfmI | CTRYAG | 3 cut(s) | 420, 1021, 1962 |
| BfoI | RGCGCY | 2 cut(s) | 142, 458 |
| BfrI | CTTAAG | 1 cut(s) | 776 |
| BglII | AGATCT | 1 cut(s) | 1141 |
| BisI | GCNGC | 8 cut(s) | 10, 462, 822, 875, 1188, 1362, 1433, 2130 |
| BlsI | GCNGC | 8 cut(s) | 11, 463, 823, 876, 1189, 1363, 1434, 2131 |
| BmcAI | AGTACT | 1 cut(s) | 1843 |
| Bme1390I | CCNGG | 6 cut(s) | 110, 305, 719, 720, 1531, 1934 |
| Bme18I | GGWCC | 3 cut(s) | 247, 722, 1229 |
| BmeT110I | CYCGRG | 2 cut(s) | 718, 2138 |
| BmgBI | CACGTC | 1 cut(s) | 1807 |
| BmgT120I | GGNCC | 4 cut(s) | 247, 722, 1229, 1930 |
| BmiI | GGNNCC | 6 cut(s) | 456, 723, 724, 788, 1230, 1931 |
| BmrFI | CCNGG | 6 cut(s) | 110, 305, 719, 720, 1531, 1934 |
| BmrI | ACTGGG | 1 cut(s) | 772 |
| BmsI | GCATC | 4 cut(s) | 681, 1318, 1753, 2116 |
| BmuI | ACTGGG | 1 cut(s) | 772 |
| BoxI | GACNNNNGTC | 2 cut(s) | 720, 1868 |
| BpiI | GAAGAC | 3 cut(s) | 671, 1658, 2189 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 38, 70, 41, 73, 836, 868 |
| BpmI | CTGGAG | 3 cut(s) | 791, 1145, 1971 |
| Bpu14I | TTCGAA | 1 cut(s) | 24 |
| BpuEI | CTTGAG | 2 cut(s) | 68, 554 |
| BpuMI | CCSGG | 4 cut(s) | 110, 305, 719, 720 |
| BsaHI | GRCGYC | 6 cut(s) | 98, 104, 234, 381, 455, 1772 |
| BsaJI | CCNNGG | 5 cut(s) | 108, 442, 718, 1427, 1933 |
| BsaWI | WCCGGW | 1 cut(s) | 132 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 44, 74, 143, 173, 308, 338 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 256, 310, 501, 2058 |
| Bse118I | RCCGGY | 4 cut(s) | 252, 256, 457, 1623 |
| Bse1I | ACTGG | 4 cut(s) | 767, 808, 1765, 1954 |
| BseBI | CCWGG | 2 cut(s) | 1531, 1934 |
| BseDI | CCNNGG | 5 cut(s) | 108, 442, 718, 1427, 1933 |
| BseGI | GGATG | 9 cut(s) | 523, 994, 1165, 1218, 1477, 1519, 1540, 1667, 2174 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 256, 310, 501, 2058 |
| BseMII | CTCAG | 4 cut(s) | 527, 1146, 1715, 1859 |
| BseNI | ACTGG | 4 cut(s) | 767, 808, 1765, 1954 |
| BseSI | GKGCMC | 2 cut(s) | 791, 931 |
| BseX3I | CGGCCG | 1 cut(s) | 254 |
| BseXI | GCAGC | 4 cut(s) | 21, 808, 1174, 1373 |
| BseYI | CCCAGC | 3 cut(s) | 1739, 1925, 2215 |
| BsgI | GTGCAG | 1 cut(s) | 1380 |
| Bsh1236I | CGCG | 3 cut(s) | 78, 265, 826 |
| Bsh1285I | CGRYCG | 2 cut(s) | 257, 304 |
| BshFI | GGCC | 6 cut(s) | 256, 644, 677, 860, 1932, 2034 |
| BshNI | GGYRCC | 2 cut(s) | 454, 786 |
| BsiEI | CGRYCG | 2 cut(s) | 257, 304 |
| BsiHKAI | GWGCWC | 4 cut(s) | 54, 441, 931, 1375 |
| BsiHKCI | CYCGRG | 2 cut(s) | 718, 2138 |
| BsiSI | CCGG | 8 cut(s) | 110, 133, 253, 257, 304, 458, 719, 1624 |
| BslFI | GGGAC | 2 cut(s) | 708, 1242 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 256, 310, 501, 2058 |
| BsmAI | GTCTC | 3 cut(s) | 151, 1237, 1704 |
| BsmBI | CGTCTC | 1 cut(s) | 1237 |
| BsmFI | GGGAC | 2 cut(s) | 708, 1242 |
| BsmI | GAATGC | 1 cut(s) | 876 |
| BsnI | GGCC | 6 cut(s) | 256, 644, 677, 860, 1932, 2034 |
| BsoBI | CYCGRG | 2 cut(s) | 718, 2138 |
| Bsp119I | TTCGAA | 1 cut(s) | 24 |
| Bsp1286I | GDGCHC | 5 cut(s) | 54, 441, 791, 931, 1375 |
| Bsp143I | GATC | 8 cut(s) | 207, 469, 827, 943, 1141, 1467, 1999, 2014 |
| Bsp19I | CCATGG | 1 cut(s) | 442 |
| BspACI | CCGC | 8 cut(s) | 76, 250, 314, 368, 461, 875, 1432, 2130 |
| BspANI | GGCC | 6 cut(s) | 256, 644, 677, 860, 1932, 2034 |
| BspCNI | CTCAG | 4 cut(s) | 526, 1147, 1714, 1858 |
| BspFNI | CGCG | 3 cut(s) | 78, 265, 826 |
| BspLI | GGNNCC | 6 cut(s) | 456, 723, 724, 788, 1230, 1931 |
| BspMAI | CTGCAG | 1 cut(s) | 424 |
| BspPI | GGATC | 1 cut(s) | 2022 |
| BspT104I | TTCGAA | 1 cut(s) | 24 |
| BspT107I | GGYRCC | 2 cut(s) | 454, 786 |
| BspTI | CTTAAG | 1 cut(s) | 776 |
| BsrFI | RCCGGY | 4 cut(s) | 252, 256, 457, 1623 |
| BsrI | ACTGG | 4 cut(s) | 767, 808, 1765, 1954 |
| BssAI | RCCGGY | 4 cut(s) | 252, 256, 457, 1623 |
| BssECI | CCNNGG | 5 cut(s) | 108, 442, 718, 1427, 1933 |
| BssMI | GATC | 8 cut(s) | 207, 469, 827, 943, 1141, 1467, 1999, 2014 |
| BssNI | GRCGYC | 6 cut(s) | 98, 104, 234, 381, 455, 1772 |
| BssSI | CACGAG | 1 cut(s) | 1368 |
| BssT1I | CCWWGG | 1 cut(s) | 442 |
| Bst2BI | CACGAG | 1 cut(s) | 1368 |
| Bst2UI | CCWGG | 2 cut(s) | 1531, 1934 |
| Bst4CI | ACNGT | 5 cut(s) | 926, 1409, 1505, 1963, 2080 |
| Bst6I | CTCTTC | 2 cut(s) | 339, 425 |
| BstACI | GRCGYC | 6 cut(s) | 98, 104, 234, 381, 455, 1772 |
| BstAFI | CTTAAG | 1 cut(s) | 776 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1055 |
| BstBI | TTCGAA | 1 cut(s) | 24 |
| BstC8I | GCNNGC | 5 cut(s) | 254, 459, 1737, 1906, 1910 |
| BstDEI | CTNAG | 6 cut(s) | 513, 1155, 1701, 1845, 2070, 2149 |
| BstDSI | CCRYGG | 1 cut(s) | 442 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 499 |
| BstF5I | GGATG | 9 cut(s) | 523, 994, 1165, 1218, 1477, 1519, 1540, 1667, 2174 |
| BstFNI | CGCG | 3 cut(s) | 78, 265, 826 |
| BstH2I | RGCGCY | 2 cut(s) | 142, 458 |
| BstHHI | GCGC | 5 cut(s) | 9, 141, 410, 457, 826 |
| BstKTI | GATC | 8 cut(s) | 210, 472, 830, 946, 1144, 1470, 2002, 2017 |
| BstMAI | GTCTC | 3 cut(s) | 151, 1237, 1704 |
| BstMBI | GATC | 8 cut(s) | 207, 469, 827, 943, 1141, 1467, 1999, 2014 |
| BstMCI | CGRYCG | 2 cut(s) | 257, 304 |
| BstNI | CCWGG | 2 cut(s) | 1531, 1934 |
| BstNSI | RCATGY | 2 cut(s) | 537, 1908 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 720, 1868 |
| BstSCI | CCNGG | 6 cut(s) | 108, 303, 717, 718, 1529, 1932 |
| BstSFI | CTRYAG | 3 cut(s) | 420, 1021, 1962 |
| BstSLI | GKGCMC | 2 cut(s) | 791, 931 |
| BstUI | CGCG | 3 cut(s) | 78, 265, 826 |
| BstV1I | GCAGC | 4 cut(s) | 21, 808, 1174, 1373 |
| BstV2I | GAAGAC | 3 cut(s) | 671, 1658, 2189 |
| BstX2I | RGATCY | 1 cut(s) | 1141 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 587, 815 |
| BstYI | RGATCY | 1 cut(s) | 1141 |
| BstZI | CGGCCG | 1 cut(s) | 254 |
| BsuRI | GGCC | 6 cut(s) | 256, 644, 677, 860, 1932, 2034 |
| BtgI | CCRYGG | 1 cut(s) | 442 |
| BtgZI | GCGATG | 1 cut(s) | 2009 |
| BtrI | CACGTC | 1 cut(s) | 1807 |
| BtsCI | GGATG | 9 cut(s) | 523, 994, 1165, 1218, 1477, 1519, 1540, 1667, 2174 |
| BtsI | GCAGTG | 1 cut(s) | 974 |
| BtsIMutI | CAGTG | 6 cut(s) | 931, 974, 1510, 1647, 1727, 1772 |
| Cac8I | GCNNGC | 5 cut(s) | 254, 459, 1737, 1906, 1910 |
| CfoI | GCGC | 5 cut(s) | 9, 141, 410, 457, 826 |
| Cfr10I | RCCGGY | 4 cut(s) | 252, 256, 457, 1623 |
| Cfr13I | GGNCC | 4 cut(s) | 247, 722, 1229, 1930 |
| Cfr9I | CCCGGG | 1 cut(s) | 718 |
| CseI | GACGC | 7 cut(s) | 67, 106, 112, 157, 271, 497, 1055 |
| Csp6I | GTAC | 3 cut(s) | 1569, 1842, 2076 |
| CviAII | CATG | 7 cut(s) | 443, 534, 815, 998, 1106, 1309, 1905 |
| CviQI | GTAC | 3 cut(s) | 1569, 1842, 2076 |
| DdeI | CTNAG | 6 cut(s) | 513, 1155, 1701, 1845, 2070, 2149 |
| DinI | GGCGCC | 1 cut(s) | 456 |
| DpnI | GATC | 8 cut(s) | 209, 471, 829, 945, 1143, 1469, 2001, 2016 |
| DpnII | GATC | 8 cut(s) | 207, 469, 827, 943, 1141, 1467, 1999, 2014 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 233, 236, 380 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 233, 236, 380 |
| EaeI | YGGCCR | 4 cut(s) | 254, 642, 858, 2032 |
| EagI | CGGCCG | 1 cut(s) | 254 |
| Eam1104I | CTCTTC | 2 cut(s) | 339, 425 |
| EarI | CTCTTC | 2 cut(s) | 339, 425 |
| EciI | GGCGGA | 3 cut(s) | 239, 329, 383 |
| Ecl136II | GAGCTC | 2 cut(s) | 439, 1373 |
| EclXI | CGGCCG | 1 cut(s) | 254 |
| Eco130I | CCWWGG | 1 cut(s) | 442 |
| Eco24I | GRGCYC | 2 cut(s) | 441, 1375 |
| Eco32I | GATATC | 1 cut(s) | 1786 |
| Eco47I | GGWCC | 3 cut(s) | 247, 722, 1229 |
| Eco52I | CGGCCG | 1 cut(s) | 254 |
| Eco53kI | GAGCTC | 2 cut(s) | 439, 1373 |
| Eco57I | CTGAAG | 4 cut(s) | 501, 732, 1025, 1751 |
| Eco88I | CYCGRG | 2 cut(s) | 718, 2138 |
| EcoICRI | GAGCTC | 2 cut(s) | 439, 1373 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 499 |
| EcoO109I | RGGNCCY | 1 cut(s) | 722 |
| EcoRII | CCWGG | 2 cut(s) | 1529, 1932 |
| EcoRV | GATATC | 1 cut(s) | 1786 |
| EcoT14I | CCWWGG | 1 cut(s) | 442 |
| EcoT38I | GRGCYC | 2 cut(s) | 441, 1375 |
| EgeI | GGCGCC | 1 cut(s) | 456 |
| EheI | GGCGCC | 1 cut(s) | 456 |
| ErhI | CCWWGG | 1 cut(s) | 442 |
| Esp3I | CGTCTC | 1 cut(s) | 1237 |
| FaeI | CATG | 7 cut(s) | 446, 537, 818, 1001, 1109, 1312, 1908 |
| FaqI | GGGAC | 2 cut(s) | 708, 1242 |
| FatI | CATG | 7 cut(s) | 442, 533, 814, 997, 1105, 1308, 1904 |
| FauI | CCCGC | 1 cut(s) | 83 |
| FblI | GTMKAC | 1 cut(s) | 326 |
| Fnu4HI | GCNGC | 8 cut(s) | 10, 462, 822, 875, 1188, 1362, 1433, 2130 |
| FokI | GGATG | 9 cut(s) | 530, 1001, 1172, 1225, 1464, 1526, 1527, 1674, 2161 |
| FriOI | GRGCYC | 2 cut(s) | 441, 1375 |
| Fsp4HI | GCNGC | 8 cut(s) | 10, 462, 822, 875, 1188, 1362, 1433, 2130 |
| FspBI | CTAG | 3 cut(s) | 659, 1487, 2063 |
| GlaI | GCGC | 5 cut(s) | 8, 140, 409, 456, 825 |
| GluI | GCNGC | 8 cut(s) | 10, 462, 822, 875, 1188, 1362, 1433, 2130 |
| GsaI | CCCAGC | 3 cut(s) | 1743, 1929, 2219 |
| GsuI | CTGGAG | 3 cut(s) | 791, 1145, 1971 |
| HaeII | RGCGCY | 2 cut(s) | 142, 458 |
| HaeIII | GGCC | 6 cut(s) | 256, 644, 677, 860, 1932, 2034 |
| HapII | CCGG | 8 cut(s) | 110, 133, 253, 257, 304, 458, 719, 1624 |
| HgaI | GACGC | 7 cut(s) | 67, 106, 112, 157, 271, 497, 1055 |
| HhaI | GCGC | 5 cut(s) | 9, 141, 410, 457, 826 |
| Hin1I | GRCGYC | 6 cut(s) | 98, 104, 234, 381, 455, 1772 |
| Hin1II | CATG | 7 cut(s) | 446, 537, 818, 1001, 1109, 1312, 1908 |
| Hin6I | GCGC | 5 cut(s) | 7, 139, 408, 455, 824 |
| HinP1I | GCGC | 5 cut(s) | 7, 139, 408, 455, 824 |
| HincII | GTYRAC | 5 cut(s) | 327, 595, 849, 1165, 1917 |
| HindII | GTYRAC | 5 cut(s) | 327, 595, 849, 1165, 1917 |
| HinfI | GANTC | 8 cut(s) | 119, 144, 158, 185, 323, 548, 952, 2141 |
| HpaI | GTTAAC | 1 cut(s) | 595 |
| HpaII | CCGG | 8 cut(s) | 110, 133, 253, 257, 304, 458, 719, 1624 |
| HphI | GGTGA | 1 cut(s) | 271 |
| Hpy188III | TCNNGA | 8 cut(s) | 85, 172, 211, 388, 515, 1368, 1670, 1973 |
| HpyAV | CCTTC | 5 cut(s) | 73, 133, 1000, 1651, 2159 |
| HpyCH4III | ACNGT | 5 cut(s) | 926, 1409, 1505, 1963, 2080 |
| HpyCH4IV | ACGT | 7 cut(s) | 234, 381, 683, 961, 1246, 1772, 1806 |
| HpyF3I | CTNAG | 6 cut(s) | 513, 1155, 1701, 1845, 2070, 2149 |
| HpySE526I | ACGT | 7 cut(s) | 234, 381, 683, 961, 1246, 1772, 1806 |
| Hsp92I | GRCGYC | 6 cut(s) | 98, 104, 234, 381, 455, 1772 |
| Hsp92II | CATG | 7 cut(s) | 446, 537, 818, 1001, 1109, 1312, 1908 |
| HspAI | GCGC | 5 cut(s) | 7, 139, 408, 455, 824 |
| KasI | GGCGCC | 1 cut(s) | 454 |
| KflI | GGGWCCC | 1 cut(s) | 722 |
| KroI | GCCGGC | 2 cut(s) | 252, 457 |
| KroNI | GCCGGC | 2 cut(s) | 254, 459 |
| KspAI | GTTAAC | 1 cut(s) | 595 |
| Kzo9I | GATC | 8 cut(s) | 207, 469, 827, 943, 1141, 1467, 1999, 2014 |
| LmnI | GCTCC | 5 cut(s) | 49, 436, 444, 632, 1952 |
| Lsp1109I | GCAGC | 4 cut(s) | 21, 808, 1174, 1373 |
| LweI | GCATC | 4 cut(s) | 681, 1318, 1753, 2116 |
| MaeI | CTAG | 3 cut(s) | 659, 1487, 2063 |
| MaeII | ACGT | 7 cut(s) | 234, 381, 683, 961, 1246, 1772, 1806 |
| MaeIII | GTNAC | 8 cut(s) | 259, 508, 679, 1536, 1645, 1816, 2047, 2065 |
| MalI | GATC | 8 cut(s) | 209, 471, 829, 945, 1143, 1469, 2001, 2016 |
| MboI | GATC | 8 cut(s) | 207, 469, 827, 943, 1141, 1467, 1999, 2014 |
| MflI | RGATCY | 1 cut(s) | 1141 |
| MhlI | GDGCHC | 5 cut(s) | 54, 441, 791, 931, 1375 |
| MlsI | TGGCCA | 2 cut(s) | 860, 2034 |
| MluCI | AATT | 4 cut(s) | 1399, 1584, 1851, 1995 |
| MluI | ACGCGT | 1 cut(s) | 263 |
| MluNI | TGGCCA | 2 cut(s) | 860, 2034 |
| Mly113I | GGCGCC | 1 cut(s) | 455 |
| MlyI | GAGTC | 6 cut(s) | 128, 152, 153, 332, 557, 2150 |
| MmeI | TCCRAC | 7 cut(s) | 57, 174, 300, 522, 1190, 1396, 1467 |
| Mox20I | TGGCCA | 2 cut(s) | 860, 2034 |
| MreI | CGCCGGCG | 1 cut(s) | 457 |
| MroNI | GCCGGC | 2 cut(s) | 252, 457 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1719 |
| MscI | TGGCCA | 2 cut(s) | 860, 2034 |
| MseI | TTAA | 9 cut(s) | 177, 525, 594, 777, 885, 1169, 1181, 1605, 1946 |
| Msp20I | TGGCCA | 2 cut(s) | 860, 2034 |
| MspA1I | CMGCKG | 1 cut(s) | 583 |
| MspCI | CTTAAG | 1 cut(s) | 776 |
| MspI | CCGG | 8 cut(s) | 110, 133, 253, 257, 304, 458, 719, 1624 |
| MspR9I | CCNGG | 6 cut(s) | 110, 305, 719, 720, 1531, 1934 |
| Mva1269I | GAATGC | 1 cut(s) | 876 |
| MvaI | CCWGG | 2 cut(s) | 1531, 1934 |
| MvnI | CGCG | 3 cut(s) | 78, 265, 826 |
| NaeI | GCCGGC | 2 cut(s) | 254, 459 |
| NarI | GGCGCC | 1 cut(s) | 455 |
| NciI | CCSGG | 4 cut(s) | 110, 305, 719, 720 |
| NcoI | CCATGG | 1 cut(s) | 442 |
| NdeII | GATC | 8 cut(s) | 207, 469, 827, 943, 1141, 1467, 1999, 2014 |
| NgoMIV | GCCGGC | 2 cut(s) | 252, 457 |
| NlaIII | CATG | 7 cut(s) | 446, 537, 818, 1001, 1109, 1312, 1908 |
| NlaIV | GGNNCC | 6 cut(s) | 456, 723, 724, 788, 1230, 1931 |
| NmeAIII | GCCGAG | 2 cut(s) | 167, 1408 |
| NmuCI | GTSAC | 4 cut(s) | 259, 508, 1645, 2065 |
| NspI | RCATGY | 2 cut(s) | 537, 1908 |
| NspV | TTCGAA | 1 cut(s) | 24 |
| PaeI | GCATGC | 1 cut(s) | 1908 |
| PaeR7I | CTCGAG | 1 cut(s) | 2138 |
| PcsI | WCGNNNNNNNCGW | 9 cut(s) | 21, 30, 159, 189, 198, 234, 237, 297, 381 |
| PctI | GAATGC | 1 cut(s) | 876 |
| PdiI | GCCGGC | 2 cut(s) | 254, 459 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1719 |
| PfeI | GAWTC | 2 cut(s) | 185, 952 |
| PflFI | GACNNNGTC | 3 cut(s) | 233, 236, 383 |
| PkrI | GCNGC | 8 cut(s) | 11, 463, 823, 876, 1189, 1363, 1434, 2131 |
| PleI | GAGTC | 6 cut(s) | 127, 152, 152, 331, 556, 2149 |
| PluTI | GGCGCC | 1 cut(s) | 458 |
| PpsI | GAGTC | 6 cut(s) | 127, 152, 152, 331, 556, 2149 |
| PpuMI | RGGWCCY | 1 cut(s) | 722 |
| PshAI | GACNNNNGTC | 2 cut(s) | 720, 1868 |
| PshBI | ATTAAT | 1 cut(s) | 525 |
| Psp124BI | GAGCTC | 2 cut(s) | 441, 1375 |
| Psp1406I | AACGTT | 1 cut(s) | 961 |
| Psp5II | RGGWCCY | 1 cut(s) | 722 |
| Psp6I | CCWGG | 2 cut(s) | 1529, 1932 |
| PspFI | CCCAGC | 3 cut(s) | 1739, 1925, 2215 |
| PspGI | CCWGG | 2 cut(s) | 1529, 1932 |
| PspN4I | GGNNCC | 6 cut(s) | 456, 723, 724, 788, 1230, 1931 |
| PspPI | GGNCC | 4 cut(s) | 247, 722, 1229, 1930 |
| PspPPI | RGGWCCY | 1 cut(s) | 722 |
| PspXI | VCTCGAGB | 1 cut(s) | 2138 |
| PstI | CTGCAG | 1 cut(s) | 424 |
| PsuI | RGATCY | 1 cut(s) | 1141 |
| PsyI | GACNNNGTC | 3 cut(s) | 233, 236, 383 |
| PvuII | CAGCTG | 1 cut(s) | 583 |
| RsaI | GTAC | 3 cut(s) | 1570, 1843, 2077 |
| RsaNI | GTAC | 3 cut(s) | 1569, 1842, 2076 |
| SacI | GAGCTC | 2 cut(s) | 441, 1375 |
| SalI | GTCGAC | 1 cut(s) | 325 |
| SaqAI | TTAA | 9 cut(s) | 177, 525, 594, 777, 885, 1169, 1181, 1605, 1946 |
| SatI | GCNGC | 8 cut(s) | 10, 462, 822, 875, 1188, 1362, 1433, 2130 |
| Sau3AI | GATC | 8 cut(s) | 207, 469, 827, 943, 1141, 1467, 1999, 2014 |
| Sau96I | GGNCC | 4 cut(s) | 247, 722, 1229, 1930 |
| ScaI | AGTACT | 1 cut(s) | 1843 |
| SchI | GAGTC | 6 cut(s) | 128, 152, 153, 332, 557, 2150 |
| ScrFI | CCNGG | 6 cut(s) | 110, 305, 719, 720, 1531, 1934 |
| SduI | GDGCHC | 5 cut(s) | 54, 441, 791, 931, 1375 |
| SfaNI | GCATC | 4 cut(s) | 681, 1318, 1753, 2116 |
| SfcI | CTRYAG | 3 cut(s) | 420, 1021, 1962 |
| SfoI | GGCGCC | 1 cut(s) | 456 |
| Sfr274I | CTCGAG | 1 cut(s) | 2138 |
| SfuI | TTCGAA | 1 cut(s) | 24 |
| SgrAI | CRCCGGYG | 1 cut(s) | 457 |
| SinI | GGWCC | 3 cut(s) | 247, 722, 1229 |
| SlaI | CTCGAG | 1 cut(s) | 2138 |
| SmaI | CCCGGG | 1 cut(s) | 720 |
| SmlI | CTYRAG | 4 cut(s) | 83, 569, 776, 2138 |
| SmoI | CTYRAG | 4 cut(s) | 83, 569, 776, 2138 |
| SpeI | ACTAGT | 1 cut(s) | 1486 |
| SphI | GCATGC | 1 cut(s) | 1908 |
| Sse9I | AATT | 4 cut(s) | 1399, 1584, 1851, 1995 |
| SsiI | CCGC | 8 cut(s) | 76, 250, 314, 368, 461, 875, 1432, 2130 |
| SspDI | GGCGCC | 1 cut(s) | 454 |
| SspMI | CTAG | 3 cut(s) | 659, 1487, 2063 |
| SstI | GAGCTC | 2 cut(s) | 441, 1375 |
| StyD4I | CCNGG | 6 cut(s) | 108, 303, 717, 718, 1529, 1932 |
| StyI | CCWWGG | 1 cut(s) | 442 |
| TaaI | ACNGT | 5 cut(s) | 926, 1409, 1505, 1963, 2080 |
| TaiI | ACGT | 7 cut(s) | 237, 384, 686, 964, 1249, 1775, 1809 |
| TasI | AATT | 4 cut(s) | 1399, 1584, 1851, 1995 |
| TatI | WGTACW | 2 cut(s) | 1568, 1841 |
| TauI | GCSGC | 4 cut(s) | 464, 877, 1435, 2132 |
| TfiI | GAWTC | 2 cut(s) | 185, 952 |
| Tru1I | TTAA | 9 cut(s) | 177, 525, 594, 777, 885, 1169, 1181, 1605, 1946 |
| Tru9I | TTAA | 9 cut(s) | 177, 525, 594, 777, 885, 1169, 1181, 1605, 1946 |
| TscAI | CASTG | 6 cut(s) | 931, 974, 1510, 1654, 1734, 1772 |
| TseFI | GTSAC | 4 cut(s) | 259, 508, 1645, 2065 |
| TseI | GCWGC | 4 cut(s) | 9, 821, 1187, 1361 |
| Tsp45I | GTSAC | 4 cut(s) | 259, 508, 1645, 2065 |
| TspDTI | ATGAA | 6 cut(s) | 17, 1229, 1610, 1689, 2100, 2178 |
| TspGWI | ACGGA | 1 cut(s) | 286 |
| TspMI | CCCGGG | 1 cut(s) | 718 |
| TspRI | CASTG | 6 cut(s) | 931, 974, 1510, 1654, 1734, 1772 |
| Tth111I | GACNNNGTC | 3 cut(s) | 233, 236, 383 |
| Vha464I | CTTAAG | 1 cut(s) | 776 |
| VneI | GTGCAC | 1 cut(s) | 927 |
| VpaK11BI | GGWCC | 3 cut(s) | 247, 722, 1229 |
| VspI | ATTAAT | 1 cut(s) | 525 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 499 |
| XceI | RCATGY | 2 cut(s) | 537, 1908 |
| XhoI | CTCGAG | 1 cut(s) | 2138 |
| XmaI | CCCGGG | 1 cut(s) | 718 |
| XmiI | GTMKAC | 1 cut(s) | 326 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1719 |
| XspI | CTAG | 3 cut(s) | 659, 1487, 2063 |
| ZraI | GACGTC | 3 cut(s) | 235, 382, 1773 |
| ZrmI | AGTACT | 1 cut(s) | 1843 |