SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD H box
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G02090 |
| fragaria_vesca | FvH4_4g36060 |
| malus_domestica | MD16G1009400.v1.1 |
| prunus_persica | Prupe.1G341200_v2.0.a1 Prupe.1G341200_v2.0.a1 |
| pyrus_communis | pycom16g00910 |
| rosa_chinensis | RchiOBHm_Chr4g0445681 |
| rosa_laevigata | RLG00000005717 |
| rosa_multiflora | Rmu_sc0003637.1_g000018 |
| rosa_roxburghii | Rroxscaffold_5G00386160 |
| rosa_rugosa | Rorug04G0364700 |
| rosa_samantha | Rh4AG425600 |
| rosa_wichuraiana | Rw4G036460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 404 |
| AatII | GACGTC | 3 cut(s) | 273, 408, 1799 |
| AccB1I | GGYRCC | 1 cut(s) | 810 |
| AccI | GTMKAC | 1 cut(s) | 2118 |
| AccII | CGCG | 3 cut(s) | 9, 78, 109 |
| AccIII | TCCGGA | 1 cut(s) | 1693 |
| AcoI | YGGCCR | 3 cut(s) | 298, 1231, 2056 |
| AcsI | RAATTY | 1 cut(s) | 975 |
| AcuI | CTGAAG | 2 cut(s) | 1775, 2055 |
| AcyI | GRCGYC | 5 cut(s) | 261, 270, 405, 1353, 1796 |
| AdeI | CACNNNGTG | 1 cut(s) | 1079 |
| AfaI | GTAC | 5 cut(s) | 500, 602, 710, 1594, 2101 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 525, 2082 |
| AflII | CTTAAG | 2 cut(s) | 1439, 1619 |
| AhlI | ACTAGT | 1 cut(s) | 1510 |
| AjnI | CCWGG | 2 cut(s) | 1956, 2160 |
| AleI | CACNNNNGTG | 1 cut(s) | 1871 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 866, 898 |
| Alw21I | GWGCWC | 3 cut(s) | 54, 465, 955 |
| Alw26I | GTCTC | 2 cut(s) | 686, 1261 |
| Alw44I | GTGCAC | 1 cut(s) | 951 |
| Ama87I | CYCGRG | 2 cut(s) | 683, 742 |
| Aor13HI | TCCGGA | 1 cut(s) | 1693 |
| AoxI | GGCC | 4 cut(s) | 298, 1231, 1954, 2056 |
| ApaLI | GTGCAC | 1 cut(s) | 951 |
| ApeKI | GCWGC | 3 cut(s) | 515, 845, 2153 |
| ApoI | RAATTY | 1 cut(s) | 975 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1743 |
| AspLEI | GCGC | 2 cut(s) | 9, 111 |
| AspS9I | GGNCC | 2 cut(s) | 746, 1253 |
| AsuC2I | CCSGG | 3 cut(s) | 275, 743, 744 |
| AsuHPI | GGTGA | 3 cut(s) | 1223, 1885, 2204 |
| AsuII | TTCGAA | 1 cut(s) | 24 |
| AvaI | CYCGRG | 2 cut(s) | 683, 742 |
| AvaII | GGWCC | 2 cut(s) | 746, 1253 |
| BaeGI | GKGCMC | 2 cut(s) | 815, 955 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1974, 2007 |
| BalI | TGGCCA | 1 cut(s) | 2058 |
| BanI | GGYRCC | 1 cut(s) | 810 |
| BanII | GRGCYC | 1 cut(s) | 465 |
| BauI | CACGAG | 1 cut(s) | 920 |
| BbsI | GAAGAC | 2 cut(s) | 180, 695 |
| Bbv12I | GWGCWC | 3 cut(s) | 54, 465, 955 |
| BbvI | GCAGC | 3 cut(s) | 502, 832, 2140 |
| BccI | CCATC | 5 cut(s) | 326, 670, 1653, 1853, 2173 |
| BceAI | ACGGC | 2 cut(s) | 285, 583 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1004, 1038 |
| BciT130I | CCWGG | 2 cut(s) | 1958, 2162 |
| BcnI | CCSGG | 3 cut(s) | 275, 743, 744 |
| BcoDI | GTCTC | 2 cut(s) | 686, 1261 |
| BcuI | ACTAGT | 1 cut(s) | 1510 |
| BfaI | CTAG | 3 cut(s) | 282, 1511, 2147 |
| BfmI | CTRYAG | 3 cut(s) | 1045, 1176, 2154 |
| BfrI | CTTAAG | 2 cut(s) | 1439, 1619 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 665 |
| BglII | AGATCT | 2 cut(s) | 1165, 1461 |
| BisI | GCNGC | 5 cut(s) | 516, 846, 1234, 1457, 2154 |
| BlsI | GCNGC | 5 cut(s) | 517, 847, 1235, 1458, 2155 |
| Bme1390I | CCNGG | 5 cut(s) | 275, 743, 744, 1958, 2162 |
| Bme18I | GGWCC | 2 cut(s) | 746, 1253 |
| BmeT110I | CYCGRG | 2 cut(s) | 683, 742 |
| BmgT120I | GGNCC | 2 cut(s) | 746, 1253 |
| BmiI | GGNNCC | 5 cut(s) | 480, 658, 747, 812, 1255 |
| BmrFI | CCNGG | 5 cut(s) | 275, 743, 744, 1958, 2162 |
| BmrI | ACTGGG | 1 cut(s) | 52 |
| BmsI | GCATC | 4 cut(s) | 367, 1149, 1777, 2140 |
| BmuI | ACTGGG | 1 cut(s) | 52 |
| BoxI | GACNNNNGTC | 1 cut(s) | 744 |
| BpiI | GAAGAC | 2 cut(s) | 180, 695 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 38, 70, 41, 73, 860, 892, 1409, 1441 |
| BpmI | CTGGAG | 3 cut(s) | 815, 1169, 1971 |
| Bpu14I | TTCGAA | 1 cut(s) | 24 |
| BpuEI | CTTGAG | 2 cut(s) | 68, 578 |
| BpuMI | CCSGG | 3 cut(s) | 275, 743, 744 |
| BsaHI | GRCGYC | 5 cut(s) | 261, 270, 405, 1353, 1796 |
| BsaI | GGTCTC | 1 cut(s) | 686 |
| BsaJI | CCNNGG | 5 cut(s) | 466, 742, 1451, 1957, 2205 |
| BsaWI | WCCGGW | 1 cut(s) | 1693 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 88, 118 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 525, 2082 |
| Bse1I | ACTGG | 4 cut(s) | 47, 604, 832, 1789 |
| Bse3DI | GCAATG | 2 cut(s) | 998, 1706 |
| BseAI | TCCGGA | 1 cut(s) | 1693 |
| BseBI | CCWGG | 2 cut(s) | 1958, 2162 |
| BseDI | CCNNGG | 5 cut(s) | 466, 742, 1451, 1957, 2205 |
| BseGI | GGATG | 9 cut(s) | 137, 382, 547, 1189, 1501, 1543, 1564, 1834, 2198 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 525, 2082 |
| BseMI | GCAATG | 2 cut(s) | 998, 1706 |
| BseMII | CTCAG | 4 cut(s) | 558, 1428, 1739, 1883 |
| BseNI | ACTGG | 4 cut(s) | 47, 604, 832, 1789 |
| BseRI | GAGGAG | 5 cut(s) | 46, 62, 386, 401, 1388 |
| BseSI | GKGCMC | 2 cut(s) | 815, 955 |
| BseXI | GCAGC | 3 cut(s) | 502, 832, 2140 |
| BseYI | CCCAGC | 1 cut(s) | 1763 |
| Bsh1236I | CGCG | 3 cut(s) | 9, 78, 109 |
| BshFI | GGCC | 4 cut(s) | 300, 1233, 1956, 2058 |
| BshNI | GGYRCC | 1 cut(s) | 810 |
| BsiHKAI | GWGCWC | 3 cut(s) | 54, 465, 955 |
| BsiHKCI | CYCGRG | 2 cut(s) | 683, 742 |
| BsiSI | CCGG | 4 cut(s) | 275, 482, 743, 1694 |
| BslFI | GGGAC | 2 cut(s) | 257, 1120 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 525, 2082 |
| BsmAI | GTCTC | 2 cut(s) | 686, 1261 |
| BsmBI | CGTCTC | 1 cut(s) | 1261 |
| BsmFI | GGGAC | 2 cut(s) | 257, 1120 |
| BsnI | GGCC | 4 cut(s) | 300, 1233, 1956, 2058 |
| Bso31I | GGTCTC | 1 cut(s) | 686 |
| BsoBI | CYCGRG | 2 cut(s) | 683, 742 |
| Bsp119I | TTCGAA | 1 cut(s) | 24 |
| Bsp1286I | GDGCHC | 4 cut(s) | 54, 465, 815, 955 |
| Bsp13I | TCCGGA | 1 cut(s) | 1693 |
| Bsp143I | GATC | 6 cut(s) | 134, 851, 967, 1165, 1461, 2038 |
| Bsp19I | CCATGG | 2 cut(s) | 466, 2205 |
| BspANI | GGCC | 4 cut(s) | 300, 1233, 1956, 2058 |
| BspCNI | CTCAG | 4 cut(s) | 559, 1427, 1738, 1882 |
| BspEI | TCCGGA | 1 cut(s) | 1693 |
| BspFNI | CGCG | 3 cut(s) | 9, 78, 109 |
| BspLI | GGNNCC | 5 cut(s) | 480, 658, 747, 812, 1255 |
| BspMAI | CTGCAG | 1 cut(s) | 2158 |
| BspT104I | TTCGAA | 1 cut(s) | 24 |
| BspT107I | GGYRCC | 1 cut(s) | 810 |
| BspTI | CTTAAG | 2 cut(s) | 1439, 1619 |
| BspTNI | GGTCTC | 1 cut(s) | 686 |
| BsrDI | GCAATG | 2 cut(s) | 998, 1706 |
| BsrI | ACTGG | 4 cut(s) | 47, 604, 832, 1789 |
| BssECI | CCNNGG | 5 cut(s) | 466, 742, 1451, 1957, 2205 |
| BssMI | GATC | 6 cut(s) | 134, 851, 967, 1165, 1461, 2038 |
| BssNI | GRCGYC | 5 cut(s) | 261, 270, 405, 1353, 1796 |
| BssSI | CACGAG | 1 cut(s) | 920 |
| BssT1I | CCWWGG | 2 cut(s) | 466, 2205 |
| Bst2BI | CACGAG | 1 cut(s) | 920 |
| Bst2UI | CCWGG | 2 cut(s) | 1958, 2162 |
| Bst4CI | ACNGT | 8 cut(s) | 289, 826, 950, 987, 1433, 1529, 1987, 2104 |
| Bst6I | CTCTTC | 1 cut(s) | 363 |
| BstACI | GRCGYC | 5 cut(s) | 261, 270, 405, 1353, 1796 |
| BstAFI | CTTAAG | 2 cut(s) | 1439, 1619 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1079 |
| BstBI | TTCGAA | 1 cut(s) | 24 |
| BstC8I | GCNNGC | 3 cut(s) | 1761, 1930, 1934 |
| BstDEI | CTNAG | 6 cut(s) | 567, 1414, 1597, 1725, 1869, 2094 |
| BstDSI | CCRYGG | 2 cut(s) | 466, 2205 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 523 |
| BstF5I | GGATG | 9 cut(s) | 137, 382, 547, 1189, 1501, 1543, 1564, 1834, 2198 |
| BstFNI | CGCG | 3 cut(s) | 9, 78, 109 |
| BstHHI | GCGC | 2 cut(s) | 9, 111 |
| BstKTI | GATC | 6 cut(s) | 137, 854, 970, 1168, 1464, 2041 |
| BstMAI | GTCTC | 2 cut(s) | 686, 1261 |
| BstMBI | GATC | 6 cut(s) | 134, 851, 967, 1165, 1461, 2038 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 665, 1079, 1096, 1765 |
| BstNI | CCWGG | 2 cut(s) | 1958, 2162 |
| BstNSI | RCATGY | 2 cut(s) | 561, 1932 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 744 |
| BstSCI | CCNGG | 5 cut(s) | 273, 741, 742, 1956, 2160 |
| BstSFI | CTRYAG | 3 cut(s) | 1045, 1176, 2154 |
| BstSLI | GKGCMC | 2 cut(s) | 815, 955 |
| BstUI | CGCG | 3 cut(s) | 9, 78, 109 |
| BstV1I | GCAGC | 3 cut(s) | 502, 832, 2140 |
| BstV2I | GAAGAC | 2 cut(s) | 180, 695 |
| BstX2I | RGATCY | 2 cut(s) | 1165, 1461 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 611, 839 |
| BstYI | RGATCY | 2 cut(s) | 1165, 1461 |
| BsuRI | GGCC | 4 cut(s) | 300, 1233, 1956, 2058 |
| BtgI | CCRYGG | 2 cut(s) | 466, 2205 |
| BtgZI | GCGATG | 2 cut(s) | 345, 2033 |
| BtsCI | GGATG | 9 cut(s) | 137, 382, 547, 1189, 1501, 1543, 1564, 1834, 2198 |
| BtsIMutI | CAGTG | 6 cut(s) | 822, 955, 1534, 1671, 1751, 1796 |
| Cac8I | GCNNGC | 3 cut(s) | 1761, 1930, 1934 |
| CfoI | GCGC | 2 cut(s) | 9, 111 |
| Cfr13I | GGNCC | 2 cut(s) | 746, 1253 |
| Cfr9I | CCCGGG | 1 cut(s) | 742 |
| CseI | GACGC | 6 cut(s) | 67, 175, 269, 1079, 1278, 1361 |
| Csp6I | GTAC | 5 cut(s) | 499, 601, 709, 1593, 2100 |
| CviQI | GTAC | 5 cut(s) | 499, 601, 709, 1593, 2100 |
| DdeI | CTNAG | 6 cut(s) | 567, 1414, 1597, 1725, 1869, 2094 |
| DpnI | GATC | 6 cut(s) | 136, 853, 969, 1167, 1463, 2040 |
| DpnII | GATC | 6 cut(s) | 134, 851, 967, 1165, 1461, 2038 |
| DraI | TTTAAA | 1 cut(s) | 732 |
| DraIII | CACNNNGTG | 1 cut(s) | 1079 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 404 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 404 |
| EaeI | YGGCCR | 3 cut(s) | 298, 1231, 2056 |
| Eam1104I | CTCTTC | 1 cut(s) | 363 |
| EarI | CTCTTC | 1 cut(s) | 363 |
| EciI | GGCGGA | 4 cut(s) | 49, 461, 669, 683 |
| Ecl136II | GAGCTC | 1 cut(s) | 463 |
| Eco130I | CCWWGG | 2 cut(s) | 466, 2205 |
| Eco24I | GRGCYC | 1 cut(s) | 465 |
| Eco31I | GGTCTC | 1 cut(s) | 686 |
| Eco47I | GGWCC | 2 cut(s) | 746, 1253 |
| Eco53kI | GAGCTC | 1 cut(s) | 463 |
| Eco57I | CTGAAG | 2 cut(s) | 1775, 2055 |
| Eco88I | CYCGRG | 2 cut(s) | 683, 742 |
| EcoICRI | GAGCTC | 1 cut(s) | 463 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 523 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1253 |
| EcoRII | CCWGG | 2 cut(s) | 1956, 2160 |
| EcoT14I | CCWWGG | 2 cut(s) | 466, 2205 |
| EcoT22I | ATGCAT | 1 cut(s) | 1708 |
| EcoT38I | GRGCYC | 1 cut(s) | 465 |
| ErhI | CCWWGG | 2 cut(s) | 466, 2205 |
| Esp3I | CGTCTC | 1 cut(s) | 1261 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 841, 873, 1674, 1706 |
| FaqI | GGGAC | 2 cut(s) | 257, 1120 |
| FauI | CCCGC | 4 cut(s) | 2, 83, 1308, 2022 |
| FblI | GTMKAC | 1 cut(s) | 2118 |
| Fnu4HI | GCNGC | 5 cut(s) | 516, 846, 1234, 1457, 2154 |
| FokI | GGATG | 9 cut(s) | 124, 389, 554, 1196, 1488, 1550, 1551, 1841, 2185 |
| FriOI | GRGCYC | 1 cut(s) | 465 |
| Fsp4HI | GCNGC | 5 cut(s) | 516, 846, 1234, 1457, 2154 |
| FspBI | CTAG | 3 cut(s) | 282, 1511, 2147 |
| GlaI | GCGC | 2 cut(s) | 8, 110 |
| GluI | GCNGC | 5 cut(s) | 516, 846, 1234, 1457, 2154 |
| GsaI | CCCAGC | 1 cut(s) | 1767 |
| GsuI | CTGGAG | 3 cut(s) | 815, 1169, 1971 |
| HaeIII | GGCC | 4 cut(s) | 300, 1233, 1956, 2058 |
| HapII | CCGG | 4 cut(s) | 275, 482, 743, 1694 |
| HgaI | GACGC | 6 cut(s) | 67, 175, 269, 1079, 1278, 1361 |
| HhaI | GCGC | 2 cut(s) | 9, 111 |
| Hin1I | GRCGYC | 5 cut(s) | 261, 270, 405, 1353, 1796 |
| Hin6I | GCGC | 2 cut(s) | 7, 109 |
| HinP1I | GCGC | 2 cut(s) | 7, 109 |
| HincII | GTYRAC | 3 cut(s) | 357, 619, 1423 |
| HindII | GTYRAC | 3 cut(s) | 357, 619, 1423 |
| HindIII | AAGCTT | 1 cut(s) | 417 |
| HinfI | GANTC | 8 cut(s) | 103, 119, 176, 218, 353, 572, 589, 2165 |
| HpaI | GTTAAC | 2 cut(s) | 619, 1423 |
| HpaII | CCGG | 4 cut(s) | 275, 482, 743, 1694 |
| HphI | GGTGA | 3 cut(s) | 1223, 1885, 2204 |
| Hpy188III | TCNNGA | 7 cut(s) | 85, 190, 232, 539, 685, 1392, 1694 |
| HpyAV | CCTTC | 7 cut(s) | 73, 133, 139, 637, 1024, 1758, 2183 |
| HpyCH4III | ACNGT | 8 cut(s) | 289, 826, 950, 987, 1433, 1529, 1987, 2104 |
| HpyCH4IV | ACGT | 4 cut(s) | 270, 405, 707, 1796 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 665, 1079, 1096, 1765 |
| HpyF3I | CTNAG | 6 cut(s) | 567, 1414, 1597, 1725, 1869, 2094 |
| HpySE526I | ACGT | 4 cut(s) | 270, 405, 707, 1796 |
| Hsp92I | GRCGYC | 5 cut(s) | 261, 270, 405, 1353, 1796 |
| HspAI | GCGC | 2 cut(s) | 7, 109 |
| Kpn2I | TCCGGA | 1 cut(s) | 1693 |
| KspAI | GTTAAC | 2 cut(s) | 619, 1423 |
| Kzo9I | GATC | 6 cut(s) | 134, 851, 967, 1165, 1461, 2038 |
| LmnI | GCTCC | 6 cut(s) | 49, 460, 468, 484, 656, 1976 |
| Lsp1109I | GCAGC | 3 cut(s) | 502, 832, 2140 |
| LweI | GCATC | 4 cut(s) | 367, 1149, 1777, 2140 |
| MaeI | CTAG | 3 cut(s) | 282, 1511, 2147 |
| MaeII | ACGT | 4 cut(s) | 270, 405, 707, 1796 |
| MaeIII | GTNAC | 8 cut(s) | 1560, 1631, 1669, 1840, 1873, 2071, 2089, 2192 |
| MalI | GATC | 6 cut(s) | 136, 853, 969, 1167, 1463, 2040 |
| MboI | GATC | 6 cut(s) | 134, 851, 967, 1165, 1461, 2038 |
| MflI | RGATCY | 2 cut(s) | 1165, 1461 |
| MhlI | GDGCHC | 4 cut(s) | 54, 465, 815, 955 |
| MlsI | TGGCCA | 1 cut(s) | 2058 |
| MluCI | AATT | 6 cut(s) | 245, 577, 784, 975, 1608, 2019 |
| MluNI | TGGCCA | 1 cut(s) | 2058 |
| MlyI | GAGTC | 4 cut(s) | 97, 128, 170, 362 |
| MmeI | TCCRAC | 4 cut(s) | 57, 372, 1491, 1954 |
| Mox20I | TGGCCA | 1 cut(s) | 2058 |
| Mph1103I | ATGCAT | 1 cut(s) | 1708 |
| MroI | TCCGGA | 1 cut(s) | 1693 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1743 |
| MscI | TGGCCA | 1 cut(s) | 2058 |
| MslI | CAYNNNNRTG | 2 cut(s) | 732, 1871 |
| Msp20I | TGGCCA | 1 cut(s) | 2058 |
| MspA1I | CMGCKG | 1 cut(s) | 1315 |
| MspCI | CTTAAG | 2 cut(s) | 1439, 1619 |
| MspI | CCGG | 4 cut(s) | 275, 482, 743, 1694 |
| MspR9I | CCNGG | 5 cut(s) | 275, 743, 744, 1958, 2162 |
| MvaI | CCWGG | 2 cut(s) | 1958, 2162 |
| MvnI | CGCG | 3 cut(s) | 9, 78, 109 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 665, 1079, 1096, 1765 |
| NciI | CCSGG | 3 cut(s) | 275, 743, 744 |
| NcoI | CCATGG | 2 cut(s) | 466, 2205 |
| NdeII | GATC | 6 cut(s) | 134, 851, 967, 1165, 1461, 2038 |
| NlaIV | GGNNCC | 5 cut(s) | 480, 658, 747, 812, 1255 |
| NmeAIII | GCCGAG | 1 cut(s) | 1432 |
| NmuCI | GTSAC | 5 cut(s) | 1631, 1669, 1873, 2089, 2192 |
| NsiI | ATGCAT | 1 cut(s) | 1708 |
| NspI | RCATGY | 2 cut(s) | 561, 1932 |
| NspV | TTCGAA | 1 cut(s) | 24 |
| OliI | CACNNNNGTG | 1 cut(s) | 1871 |
| PaeI | GCATGC | 1 cut(s) | 1932 |
| PcsI | WCGNNNNNNNCGW | 8 cut(s) | 21, 30, 219, 261, 264, 267, 327, 405 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1743 |
| PfeI | GAWTC | 4 cut(s) | 218, 572, 589, 2165 |
| PflFI | GACNNNGTC | 2 cut(s) | 269, 404 |
| PfoI | TCCNGGA | 2 cut(s) | 273, 2160 |
| PkrI | GCNGC | 5 cut(s) | 517, 847, 1235, 1458, 2155 |
| PleI | GAGTC | 4 cut(s) | 97, 127, 170, 361 |
| PpsI | GAGTC | 4 cut(s) | 97, 127, 170, 361 |
| PpuMI | RGGWCCY | 1 cut(s) | 1253 |
| PshAI | GACNNNNGTC | 1 cut(s) | 744 |
| Psp124BI | GAGCTC | 1 cut(s) | 465 |
| Psp5II | RGGWCCY | 1 cut(s) | 1253 |
| Psp6I | CCWGG | 2 cut(s) | 1956, 2160 |
| PspFI | CCCAGC | 1 cut(s) | 1763 |
| PspGI | CCWGG | 2 cut(s) | 1956, 2160 |
| PspN4I | GGNNCC | 5 cut(s) | 480, 658, 747, 812, 1255 |
| PspPI | GGNCC | 2 cut(s) | 746, 1253 |
| PspPPI | RGGWCCY | 1 cut(s) | 1253 |
| PstI | CTGCAG | 1 cut(s) | 2158 |
| PsuI | RGATCY | 2 cut(s) | 1165, 1461 |
| PsyI | GACNNNGTC | 2 cut(s) | 269, 404 |
| RsaI | GTAC | 5 cut(s) | 500, 602, 710, 1594, 2101 |
| RsaNI | GTAC | 5 cut(s) | 499, 601, 709, 1593, 2100 |
| RseI | CAYNNNNRTG | 2 cut(s) | 732, 1871 |
| SacI | GAGCTC | 1 cut(s) | 465 |
| SatI | GCNGC | 5 cut(s) | 516, 846, 1234, 1457, 2154 |
| Sau3AI | GATC | 6 cut(s) | 134, 851, 967, 1165, 1461, 2038 |
| Sau96I | GGNCC | 2 cut(s) | 746, 1253 |
| SchI | GAGTC | 4 cut(s) | 97, 128, 170, 362 |
| ScrFI | CCNGG | 5 cut(s) | 275, 743, 744, 1958, 2162 |
| SduI | GDGCHC | 4 cut(s) | 54, 465, 815, 955 |
| SfaNI | GCATC | 4 cut(s) | 367, 1149, 1777, 2140 |
| SfcI | CTRYAG | 3 cut(s) | 1045, 1176, 2154 |
| SfuI | TTCGAA | 1 cut(s) | 24 |
| SinI | GGWCC | 2 cut(s) | 746, 1253 |
| SmaI | CCCGGG | 1 cut(s) | 744 |
| SmiI | ATTTAAAT | 1 cut(s) | 732 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 732, 1871 |
| SmlI | CTYRAG | 4 cut(s) | 83, 593, 1439, 1619 |
| SmoI | CTYRAG | 4 cut(s) | 83, 593, 1439, 1619 |
| SpeI | ACTAGT | 1 cut(s) | 1510 |
| SphI | GCATGC | 1 cut(s) | 1932 |
| Sse9I | AATT | 6 cut(s) | 245, 577, 784, 975, 1608, 2019 |
| SspI | AATATT | 1 cut(s) | 349 |
| SspMI | CTAG | 3 cut(s) | 282, 1511, 2147 |
| SstI | GAGCTC | 1 cut(s) | 465 |
| StyD4I | CCNGG | 5 cut(s) | 273, 741, 742, 1956, 2160 |
| StyI | CCWWGG | 2 cut(s) | 466, 2205 |
| SwaI | ATTTAAAT | 1 cut(s) | 732 |
| TaaI | ACNGT | 8 cut(s) | 289, 826, 950, 987, 1433, 1529, 1987, 2104 |
| TaiI | ACGT | 4 cut(s) | 273, 408, 710, 1799 |
| TaqI | TCGA | 7 cut(s) | 15, 24, 117, 189, 315, 854, 1427 |
| TaqII | GACCGA | 1 cut(s) | 2040 |
| TasI | AATT | 6 cut(s) | 245, 577, 784, 975, 1608, 2019 |
| TauI | GCSGC | 2 cut(s) | 1236, 1459 |
| TfiI | GAWTC | 4 cut(s) | 218, 572, 589, 2165 |
| TscAI | CASTG | 6 cut(s) | 829, 955, 1534, 1678, 1758, 1796 |
| TseFI | GTSAC | 5 cut(s) | 1631, 1669, 1873, 2089, 2192 |
| TseI | GCWGC | 3 cut(s) | 515, 845, 2153 |
| Tsp45I | GTSAC | 5 cut(s) | 1631, 1669, 1873, 2089, 2192 |
| TspDTI | ATGAA | 6 cut(s) | 17, 186, 1253, 1602, 2124, 2202 |
| TspGWI | ACGGA | 2 cut(s) | 221, 1892 |
| TspMI | CCCGGG | 1 cut(s) | 742 |
| TspRI | CASTG | 6 cut(s) | 829, 955, 1534, 1678, 1758, 1796 |
| Tth111I | GACNNNGTC | 2 cut(s) | 269, 404 |
| Vha464I | CTTAAG | 2 cut(s) | 1439, 1619 |
| VneI | GTGCAC | 1 cut(s) | 951 |
| VpaK11BI | GGWCC | 2 cut(s) | 746, 1253 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 523 |
| XapI | RAATTY | 1 cut(s) | 975 |
| XceI | RCATGY | 2 cut(s) | 561, 1932 |
| XmaI | CCCGGG | 1 cut(s) | 742 |
| XmiI | GTMKAC | 1 cut(s) | 2118 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1743 |
| XspI | CTAG | 3 cut(s) | 282, 1511, 2147 |
| ZraI | GACGTC | 3 cut(s) | 271, 406, 1797 |
| Zsp2I | ATGCAT | 1 cut(s) | 1708 |