SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD H box
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G02090 |
| fragaria_vesca | FvH4_4g36060 |
| malus_domestica | MD16G1009400.v1.1 |
| prunus_persica | Prupe.1G341200_v2.0.a1 Prupe.1G341200_v2.0.a1 |
| pyrus_communis | pycom16g00910 |
| rosa_chinensis | RchiOBHm_Chr4g0445681 |
| rosa_laevigata | RLG00000005717 |
| rosa_multiflora | Rmu_sc0003637.1_g000018 |
| rosa_roxburghii | Rroxscaffold_5G00386160 |
| rosa_rugosa | Rorug04G0364700 |
| rosa_samantha | Rh4AG425600 |
| rosa_wichuraiana | Rw4G036460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 3 cut(s) | 233, 236, 383 |
| AatII | GACGTC | 3 cut(s) | 237, 387, 1778 |
| AccB1I | GGYRCC | 2 cut(s) | 457, 789 |
| AccI | GTMKAC | 1 cut(s) | 326 |
| AccII | CGCG | 3 cut(s) | 78, 265, 829 |
| AciI | CCGC | 9 cut(s) | 76, 107, 250, 314, 371, 425, 878, 1435, 2133 |
| AclI | AACGTT | 1 cut(s) | 964 |
| AclWI | GGATC | 1 cut(s) | 2025 |
| AcoI | YGGCCR | 4 cut(s) | 254, 645, 861, 2035 |
| AcuI | CTGAAG | 5 cut(s) | 104, 504, 735, 1028, 1754 |
| AcyI | GRCGYC | 5 cut(s) | 98, 104, 234, 384, 1775 |
| AfaI | GTAC | 3 cut(s) | 1573, 1846, 2080 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 256, 504, 2061 |
| AflII | CTTAAG | 1 cut(s) | 779 |
| AflIII | ACRYGT | 1 cut(s) | 263 |
| AhlI | ACTAGT | 1 cut(s) | 1489 |
| AjiI | CACGTC | 1 cut(s) | 1810 |
| AjnI | CCWGG | 2 cut(s) | 1532, 1935 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1211, 1243 |
| Alw21I | GWGCWC | 4 cut(s) | 54, 444, 934, 1378 |
| Alw26I | GTCTC | 3 cut(s) | 151, 1240, 1707 |
| Alw44I | GTGCAC | 1 cut(s) | 930 |
| AlwI | GGATC | 1 cut(s) | 2025 |
| Ama87I | CYCGRG | 2 cut(s) | 721, 2141 |
| AoxI | GGCC | 7 cut(s) | 254, 645, 678, 861, 1933, 2010, 2035 |
| ApaLI | GTGCAC | 1 cut(s) | 930 |
| ApeKI | GCWGC | 4 cut(s) | 9, 824, 1190, 1364 |
| AseI | ATTAAT | 1 cut(s) | 528 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1722 |
| AspLEI | GCGC | 4 cut(s) | 9, 141, 413, 829 |
| AspS9I | GGNCC | 4 cut(s) | 247, 725, 1232, 1933 |
| AsuC2I | CCSGG | 2 cut(s) | 722, 723 |
| AsuHPI | GGTGA | 1 cut(s) | 271 |
| AsuII | TTCGAA | 1 cut(s) | 24 |
| AvaI | CYCGRG | 2 cut(s) | 721, 2141 |
| AvaII | GGWCC | 3 cut(s) | 247, 725, 1232 |
| BaeGI | GKGCMC | 2 cut(s) | 794, 934 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1953, 1986 |
| BalI | TGGCCA | 2 cut(s) | 863, 2037 |
| BanI | GGYRCC | 2 cut(s) | 457, 789 |
| BanII | GRGCYC | 2 cut(s) | 444, 1378 |
| BauI | CACGAG | 1 cut(s) | 1371 |
| BbsI | GAAGAC | 3 cut(s) | 674, 1661, 2192 |
| Bbv12I | GWGCWC | 4 cut(s) | 54, 444, 934, 1378 |
| BbvI | GCAGC | 4 cut(s) | 21, 811, 1177, 1376 |
| BccI | CCATC | 5 cut(s) | 649, 802, 1488, 1832, 2152 |
| BceAI | ACGGC | 2 cut(s) | 480, 665 |
| BciT130I | CCWGG | 2 cut(s) | 1534, 1937 |
| BcnI | CCSGG | 2 cut(s) | 722, 723 |
| BcoDI | GTCTC | 3 cut(s) | 151, 1240, 1707 |
| BcuI | ACTAGT | 1 cut(s) | 1489 |
| BfaI | CTAG | 3 cut(s) | 662, 1490, 2066 |
| BfmI | CTRYAG | 2 cut(s) | 1024, 1965 |
| BfoI | RGCGCY | 1 cut(s) | 142 |
| BfrI | CTTAAG | 1 cut(s) | 779 |
| BglII | AGATCT | 1 cut(s) | 1144 |
| BisI | GCNGC | 8 cut(s) | 10, 107, 825, 878, 1191, 1365, 1436, 2133 |
| BlsI | GCNGC | 8 cut(s) | 11, 108, 826, 879, 1192, 1366, 1437, 2134 |
| BmcAI | AGTACT | 1 cut(s) | 1846 |
| Bme1390I | CCNGG | 4 cut(s) | 722, 723, 1534, 1937 |
| Bme18I | GGWCC | 3 cut(s) | 247, 725, 1232 |
| BmeT110I | CYCGRG | 2 cut(s) | 721, 2141 |
| BmgBI | CACGTC | 1 cut(s) | 1810 |
| BmgT120I | GGNCC | 4 cut(s) | 247, 725, 1232, 1933 |
| BmiI | GGNNCC | 6 cut(s) | 459, 726, 727, 791, 1233, 1934 |
| BmrFI | CCNGG | 4 cut(s) | 722, 723, 1534, 1937 |
| BmrI | ACTGGG | 1 cut(s) | 775 |
| BmsI | GCATC | 4 cut(s) | 684, 1321, 1756, 2119 |
| BmuI | ACTGGG | 1 cut(s) | 775 |
| BoxI | GACNNNNGTC | 2 cut(s) | 723, 1871 |
| BpiI | GAAGAC | 3 cut(s) | 674, 1661, 2192 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 38, 70, 41, 73, 839, 871 |
| BpmI | CTGGAG | 3 cut(s) | 794, 1148, 1974 |
| Bpu14I | TTCGAA | 1 cut(s) | 24 |
| BpuEI | CTTGAG | 1 cut(s) | 557 |
| BpuMI | CCSGG | 2 cut(s) | 722, 723 |
| BsaHI | GRCGYC | 5 cut(s) | 98, 104, 234, 384, 1775 |
| BsaJI | CCNNGG | 5 cut(s) | 445, 721, 1430, 1936, 2013 |
| BsaWI | WCCGGW | 1 cut(s) | 132 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 44, 74, 143, 173, 308, 338 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 256, 504, 2061 |
| Bse118I | RCCGGY | 4 cut(s) | 109, 252, 256, 1626 |
| Bse1I | ACTGG | 4 cut(s) | 770, 811, 1768, 1957 |
| BseBI | CCWGG | 2 cut(s) | 1534, 1937 |
| BseDI | CCNNGG | 5 cut(s) | 445, 721, 1430, 1936, 2013 |
| BseGI | GGATG | 8 cut(s) | 526, 997, 1168, 1221, 1480, 1522, 1543, 1670 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 256, 504, 2061 |
| BseMII | CTCAG | 5 cut(s) | 530, 1149, 1718, 1862, 2172 |
| BseNI | ACTGG | 4 cut(s) | 770, 811, 1768, 1957 |
| BseSI | GKGCMC | 2 cut(s) | 794, 934 |
| BseX3I | CGGCCG | 1 cut(s) | 254 |
| BseXI | GCAGC | 4 cut(s) | 21, 811, 1177, 1376 |
| BseYI | CCCAGC | 3 cut(s) | 1742, 1928, 2218 |
| BsgI | GTGCAG | 1 cut(s) | 1383 |
| Bsh1236I | CGCG | 3 cut(s) | 78, 265, 829 |
| Bsh1285I | CGRYCG | 1 cut(s) | 257 |
| BshFI | GGCC | 7 cut(s) | 256, 647, 680, 863, 1935, 2012, 2037 |
| BshNI | GGYRCC | 2 cut(s) | 457, 789 |
| BsiEI | CGRYCG | 1 cut(s) | 257 |
| BsiHKAI | GWGCWC | 4 cut(s) | 54, 444, 934, 1378 |
| BsiHKCI | CYCGRG | 2 cut(s) | 721, 2141 |
| BsiSI | CCGG | 6 cut(s) | 110, 133, 253, 257, 722, 1627 |
| BslFI | GGGAC | 2 cut(s) | 711, 1245 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 256, 504, 2061 |
| BsmAI | GTCTC | 3 cut(s) | 151, 1240, 1707 |
| BsmBI | CGTCTC | 1 cut(s) | 1240 |
| BsmFI | GGGAC | 2 cut(s) | 711, 1245 |
| BsmI | GAATGC | 1 cut(s) | 879 |
| BsnI | GGCC | 7 cut(s) | 256, 647, 680, 863, 1935, 2012, 2037 |
| BsoBI | CYCGRG | 2 cut(s) | 721, 2141 |
| Bsp119I | TTCGAA | 1 cut(s) | 24 |
| Bsp1286I | GDGCHC | 5 cut(s) | 54, 444, 794, 934, 1378 |
| Bsp143I | GATC | 8 cut(s) | 207, 472, 830, 946, 1144, 1470, 2002, 2017 |
| Bsp19I | CCATGG | 1 cut(s) | 445 |
| BspACI | CCGC | 9 cut(s) | 76, 107, 250, 314, 371, 425, 878, 1435, 2133 |
| BspANI | GGCC | 7 cut(s) | 256, 647, 680, 863, 1935, 2012, 2037 |
| BspCNI | CTCAG | 5 cut(s) | 529, 1150, 1717, 1861, 2173 |
| BspFNI | CGCG | 3 cut(s) | 78, 265, 829 |
| BspLI | GGNNCC | 6 cut(s) | 459, 726, 727, 791, 1233, 1934 |
| BspPI | GGATC | 1 cut(s) | 2025 |
| BspT104I | TTCGAA | 1 cut(s) | 24 |
| BspT107I | GGYRCC | 2 cut(s) | 457, 789 |
| BspTI | CTTAAG | 1 cut(s) | 779 |
| BsrFI | RCCGGY | 4 cut(s) | 109, 252, 256, 1626 |
| BsrI | ACTGG | 4 cut(s) | 770, 811, 1768, 1957 |
| BssAI | RCCGGY | 4 cut(s) | 109, 252, 256, 1626 |
| BssECI | CCNNGG | 5 cut(s) | 445, 721, 1430, 1936, 2013 |
| BssMI | GATC | 8 cut(s) | 207, 472, 830, 946, 1144, 1470, 2002, 2017 |
| BssNI | GRCGYC | 5 cut(s) | 98, 104, 234, 384, 1775 |
| BssSI | CACGAG | 1 cut(s) | 1371 |
| BssT1I | CCWWGG | 1 cut(s) | 445 |
| Bst2BI | CACGAG | 1 cut(s) | 1371 |
| Bst2UI | CCWGG | 2 cut(s) | 1534, 1937 |
| Bst4CI | ACNGT | 5 cut(s) | 929, 1412, 1508, 1966, 2083 |
| Bst6I | CTCTTC | 1 cut(s) | 428 |
| BstACI | GRCGYC | 5 cut(s) | 98, 104, 234, 384, 1775 |
| BstAFI | CTTAAG | 1 cut(s) | 779 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1058 |
| BstBI | TTCGAA | 1 cut(s) | 24 |
| BstC8I | GCNNGC | 5 cut(s) | 111, 254, 1740, 1909, 1913 |
| BstDEI | CTNAG | 7 cut(s) | 516, 1158, 1704, 1848, 2073, 2152, 2181 |
| BstDSI | CCRYGG | 1 cut(s) | 445 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 502 |
| BstF5I | GGATG | 8 cut(s) | 526, 997, 1168, 1221, 1480, 1522, 1543, 1670 |
| BstFNI | CGCG | 3 cut(s) | 78, 265, 829 |
| BstH2I | RGCGCY | 1 cut(s) | 142 |
| BstHHI | GCGC | 4 cut(s) | 9, 141, 413, 829 |
| BstKTI | GATC | 8 cut(s) | 210, 475, 833, 949, 1147, 1473, 2005, 2020 |
| BstMAI | GTCTC | 3 cut(s) | 151, 1240, 1707 |
| BstMBI | GATC | 8 cut(s) | 207, 472, 830, 946, 1144, 1470, 2002, 2017 |
| BstMCI | CGRYCG | 1 cut(s) | 257 |
| BstNI | CCWGG | 2 cut(s) | 1534, 1937 |
| BstNSI | RCATGY | 2 cut(s) | 540, 1911 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 723, 1871 |
| BstSCI | CCNGG | 4 cut(s) | 720, 721, 1532, 1935 |
| BstSFI | CTRYAG | 2 cut(s) | 1024, 1965 |
| BstSLI | GKGCMC | 2 cut(s) | 794, 934 |
| BstUI | CGCG | 3 cut(s) | 78, 265, 829 |
| BstV1I | GCAGC | 4 cut(s) | 21, 811, 1177, 1376 |
| BstV2I | GAAGAC | 3 cut(s) | 674, 1661, 2192 |
| BstX2I | RGATCY | 1 cut(s) | 1144 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 590, 818 |
| BstYI | RGATCY | 1 cut(s) | 1144 |
| BstZI | CGGCCG | 1 cut(s) | 254 |
| BsuRI | GGCC | 7 cut(s) | 256, 647, 680, 863, 1935, 2012, 2037 |
| BtgI | CCRYGG | 1 cut(s) | 445 |
| BtgZI | GCGATG | 1 cut(s) | 2012 |
| BtrI | CACGTC | 1 cut(s) | 1810 |
| BtsCI | GGATG | 8 cut(s) | 526, 997, 1168, 1221, 1480, 1522, 1543, 1670 |
| BtsI | GCAGTG | 1 cut(s) | 977 |
| BtsIMutI | CAGTG | 6 cut(s) | 934, 977, 1513, 1650, 1730, 1775 |
| Cac8I | GCNNGC | 5 cut(s) | 111, 254, 1740, 1909, 1913 |
| CfoI | GCGC | 4 cut(s) | 9, 141, 413, 829 |
| Cfr10I | RCCGGY | 4 cut(s) | 109, 252, 256, 1626 |
| Cfr13I | GGNCC | 4 cut(s) | 247, 725, 1232, 1933 |
| Cfr9I | CCCGGG | 1 cut(s) | 721 |
| CseI | GACGC | 7 cut(s) | 67, 106, 112, 157, 271, 500, 1058 |
| Csp6I | GTAC | 3 cut(s) | 1572, 1845, 2079 |
| CviAII | CATG | 7 cut(s) | 446, 537, 818, 1001, 1109, 1312, 1908 |
| CviQI | GTAC | 3 cut(s) | 1572, 1845, 2079 |
| DdeI | CTNAG | 7 cut(s) | 516, 1158, 1704, 1848, 2073, 2152, 2181 |
| DpnI | GATC | 8 cut(s) | 209, 474, 832, 948, 1146, 1472, 2004, 2019 |
| DpnII | GATC | 8 cut(s) | 207, 472, 830, 946, 1144, 1470, 2002, 2017 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 233, 236, 383 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 233, 236, 383 |
| EaeI | YGGCCR | 4 cut(s) | 254, 645, 861, 2035 |
| EagI | CGGCCG | 1 cut(s) | 254 |
| Eam1104I | CTCTTC | 1 cut(s) | 428 |
| EarI | CTCTTC | 1 cut(s) | 428 |
| EciI | GGCGGA | 4 cut(s) | 239, 329, 386, 440 |
| Ecl136II | GAGCTC | 2 cut(s) | 442, 1376 |
| EclXI | CGGCCG | 1 cut(s) | 254 |
| Eco130I | CCWWGG | 1 cut(s) | 445 |
| Eco24I | GRGCYC | 2 cut(s) | 444, 1378 |
| Eco32I | GATATC | 1 cut(s) | 1789 |
| Eco47I | GGWCC | 3 cut(s) | 247, 725, 1232 |
| Eco52I | CGGCCG | 1 cut(s) | 254 |
| Eco53kI | GAGCTC | 2 cut(s) | 442, 1376 |
| Eco57I | CTGAAG | 5 cut(s) | 104, 504, 735, 1028, 1754 |
| Eco88I | CYCGRG | 2 cut(s) | 721, 2141 |
| EcoICRI | GAGCTC | 2 cut(s) | 442, 1376 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 502 |
| EcoO109I | RGGNCCY | 1 cut(s) | 725 |
| EcoRII | CCWGG | 2 cut(s) | 1532, 1935 |
| EcoRV | GATATC | 1 cut(s) | 1789 |
| EcoT14I | CCWWGG | 1 cut(s) | 445 |
| EcoT38I | GRGCYC | 2 cut(s) | 444, 1378 |
| ErhI | CCWWGG | 1 cut(s) | 445 |
| Esp3I | CGTCTC | 1 cut(s) | 1240 |
| FaeI | CATG | 7 cut(s) | 449, 540, 821, 1004, 1112, 1315, 1911 |
| FaqI | GGGAC | 2 cut(s) | 711, 1245 |
| FatI | CATG | 7 cut(s) | 445, 536, 817, 1000, 1108, 1311, 1907 |
| FauI | CCCGC | 1 cut(s) | 83 |
| FblI | GTMKAC | 1 cut(s) | 326 |
| Fnu4HI | GCNGC | 8 cut(s) | 10, 107, 825, 878, 1191, 1365, 1436, 2133 |
| FokI | GGATG | 8 cut(s) | 533, 1004, 1175, 1228, 1467, 1529, 1530, 1677 |
| FriOI | GRGCYC | 2 cut(s) | 444, 1378 |
| Fsp4HI | GCNGC | 8 cut(s) | 10, 107, 825, 878, 1191, 1365, 1436, 2133 |
| FspBI | CTAG | 3 cut(s) | 662, 1490, 2066 |
| GlaI | GCGC | 4 cut(s) | 8, 140, 412, 828 |
| GluI | GCNGC | 8 cut(s) | 10, 107, 825, 878, 1191, 1365, 1436, 2133 |
| GsaI | CCCAGC | 3 cut(s) | 1746, 1932, 2222 |
| GsuI | CTGGAG | 3 cut(s) | 794, 1148, 1974 |
| HaeII | RGCGCY | 1 cut(s) | 142 |
| HaeIII | GGCC | 7 cut(s) | 256, 647, 680, 863, 1935, 2012, 2037 |
| HapII | CCGG | 6 cut(s) | 110, 133, 253, 257, 722, 1627 |
| HgaI | GACGC | 7 cut(s) | 67, 106, 112, 157, 271, 500, 1058 |
| HhaI | GCGC | 4 cut(s) | 9, 141, 413, 829 |
| Hin1I | GRCGYC | 5 cut(s) | 98, 104, 234, 384, 1775 |
| Hin1II | CATG | 7 cut(s) | 449, 540, 821, 1004, 1112, 1315, 1911 |
| Hin6I | GCGC | 4 cut(s) | 7, 139, 411, 827 |
| HinP1I | GCGC | 4 cut(s) | 7, 139, 411, 827 |
| HincII | GTYRAC | 5 cut(s) | 327, 598, 852, 1168, 1920 |
| HindII | GTYRAC | 5 cut(s) | 327, 598, 852, 1168, 1920 |
| HinfI | GANTC | 8 cut(s) | 119, 144, 158, 185, 323, 551, 955, 2144 |
| HpaI | GTTAAC | 1 cut(s) | 598 |
| HpaII | CCGG | 6 cut(s) | 110, 133, 253, 257, 722, 1627 |
| HphI | GGTGA | 1 cut(s) | 271 |
| Hpy188III | TCNNGA | 8 cut(s) | 82, 172, 211, 391, 518, 1371, 1673, 1976 |
| HpyAV | CCTTC | 5 cut(s) | 73, 133, 1003, 1654, 2162 |
| HpyCH4III | ACNGT | 5 cut(s) | 929, 1412, 1508, 1966, 2083 |
| HpyCH4IV | ACGT | 7 cut(s) | 234, 384, 686, 964, 1249, 1775, 1809 |
| HpyF3I | CTNAG | 7 cut(s) | 516, 1158, 1704, 1848, 2073, 2152, 2181 |
| HpySE526I | ACGT | 7 cut(s) | 234, 384, 686, 964, 1249, 1775, 1809 |
| Hsp92I | GRCGYC | 5 cut(s) | 98, 104, 234, 384, 1775 |
| Hsp92II | CATG | 7 cut(s) | 449, 540, 821, 1004, 1112, 1315, 1911 |
| HspAI | GCGC | 4 cut(s) | 7, 139, 411, 827 |
| KflI | GGGWCCC | 1 cut(s) | 725 |
| KroI | GCCGGC | 2 cut(s) | 109, 252 |
| KroNI | GCCGGC | 2 cut(s) | 111, 254 |
| KspAI | GTTAAC | 1 cut(s) | 598 |
| Kzo9I | GATC | 8 cut(s) | 207, 472, 830, 946, 1144, 1470, 2002, 2017 |
| LmnI | GCTCC | 5 cut(s) | 49, 439, 447, 635, 1955 |
| Lsp1109I | GCAGC | 4 cut(s) | 21, 811, 1177, 1376 |
| LweI | GCATC | 4 cut(s) | 684, 1321, 1756, 2119 |
| MaeI | CTAG | 3 cut(s) | 662, 1490, 2066 |
| MaeII | ACGT | 7 cut(s) | 234, 384, 686, 964, 1249, 1775, 1809 |
| MaeIII | GTNAC | 9 cut(s) | 259, 511, 682, 1539, 1648, 1819, 1852, 2050, 2068 |
| MalI | GATC | 8 cut(s) | 209, 474, 832, 948, 1146, 1472, 2004, 2019 |
| MboI | GATC | 8 cut(s) | 207, 472, 830, 946, 1144, 1470, 2002, 2017 |
| MflI | RGATCY | 1 cut(s) | 1144 |
| MhlI | GDGCHC | 5 cut(s) | 54, 444, 794, 934, 1378 |
| MlsI | TGGCCA | 2 cut(s) | 863, 2037 |
| MluCI | AATT | 3 cut(s) | 1402, 1587, 1998 |
| MluI | ACGCGT | 1 cut(s) | 263 |
| MluNI | TGGCCA | 2 cut(s) | 863, 2037 |
| MlyI | GAGTC | 6 cut(s) | 128, 152, 153, 332, 560, 2153 |
| MmeI | TCCRAC | 6 cut(s) | 57, 174, 300, 1193, 1399, 1470 |
| Mox20I | TGGCCA | 2 cut(s) | 863, 2037 |
| MroNI | GCCGGC | 2 cut(s) | 109, 252 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1722 |
| MscI | TGGCCA | 2 cut(s) | 863, 2037 |
| MseI | TTAA | 9 cut(s) | 177, 528, 597, 780, 888, 1172, 1184, 1608, 1949 |
| Msp20I | TGGCCA | 2 cut(s) | 863, 2037 |
| MspA1I | CMGCKG | 2 cut(s) | 586, 2135 |
| MspCI | CTTAAG | 1 cut(s) | 779 |
| MspI | CCGG | 6 cut(s) | 110, 133, 253, 257, 722, 1627 |
| MspR9I | CCNGG | 4 cut(s) | 722, 723, 1534, 1937 |
| Mva1269I | GAATGC | 1 cut(s) | 879 |
| MvaI | CCWGG | 2 cut(s) | 1534, 1937 |
| MvnI | CGCG | 3 cut(s) | 78, 265, 829 |
| NaeI | GCCGGC | 2 cut(s) | 111, 254 |
| NciI | CCSGG | 2 cut(s) | 722, 723 |
| NcoI | CCATGG | 1 cut(s) | 445 |
| NdeII | GATC | 8 cut(s) | 207, 472, 830, 946, 1144, 1470, 2002, 2017 |
| NgoMIV | GCCGGC | 2 cut(s) | 109, 252 |
| NlaIII | CATG | 7 cut(s) | 449, 540, 821, 1004, 1112, 1315, 1911 |
| NlaIV | GGNNCC | 6 cut(s) | 459, 726, 727, 791, 1233, 1934 |
| NmeAIII | GCCGAG | 3 cut(s) | 167, 1411, 2038 |
| NmuCI | GTSAC | 4 cut(s) | 259, 511, 1648, 2068 |
| NspI | RCATGY | 2 cut(s) | 540, 1911 |
| NspV | TTCGAA | 1 cut(s) | 24 |
| PaeI | GCATGC | 1 cut(s) | 1911 |
| PaeR7I | CTCGAG | 1 cut(s) | 2141 |
| PctI | GAATGC | 1 cut(s) | 879 |
| PdiI | GCCGGC | 2 cut(s) | 111, 254 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1722 |
| PfeI | GAWTC | 2 cut(s) | 185, 955 |
| PflFI | GACNNNGTC | 3 cut(s) | 233, 236, 386 |
| PkrI | GCNGC | 8 cut(s) | 11, 108, 826, 879, 1192, 1366, 1437, 2134 |
| PleI | GAGTC | 6 cut(s) | 127, 152, 152, 331, 559, 2152 |
| PpsI | GAGTC | 6 cut(s) | 127, 152, 152, 331, 559, 2152 |
| PpuMI | RGGWCCY | 1 cut(s) | 725 |
| PshAI | GACNNNNGTC | 2 cut(s) | 723, 1871 |
| PshBI | ATTAAT | 1 cut(s) | 528 |
| Psp124BI | GAGCTC | 2 cut(s) | 444, 1378 |
| Psp1406I | AACGTT | 1 cut(s) | 964 |
| Psp5II | RGGWCCY | 1 cut(s) | 725 |
| Psp6I | CCWGG | 2 cut(s) | 1532, 1935 |
| PspFI | CCCAGC | 3 cut(s) | 1742, 1928, 2218 |
| PspGI | CCWGG | 2 cut(s) | 1532, 1935 |
| PspN4I | GGNNCC | 6 cut(s) | 459, 726, 727, 791, 1233, 1934 |
| PspPI | GGNCC | 4 cut(s) | 247, 725, 1232, 1933 |
| PspPPI | RGGWCCY | 1 cut(s) | 725 |
| PspXI | VCTCGAGB | 1 cut(s) | 2141 |
| PsuI | RGATCY | 1 cut(s) | 1144 |
| PsyI | GACNNNGTC | 3 cut(s) | 233, 236, 386 |
| PvuII | CAGCTG | 1 cut(s) | 586 |
| RsaI | GTAC | 3 cut(s) | 1573, 1846, 2080 |
| RsaNI | GTAC | 3 cut(s) | 1572, 1845, 2079 |
| SacI | GAGCTC | 2 cut(s) | 444, 1378 |
| SalI | GTCGAC | 1 cut(s) | 325 |
| SaqAI | TTAA | 9 cut(s) | 177, 528, 597, 780, 888, 1172, 1184, 1608, 1949 |
| SatI | GCNGC | 8 cut(s) | 10, 107, 825, 878, 1191, 1365, 1436, 2133 |
| Sau3AI | GATC | 8 cut(s) | 207, 472, 830, 946, 1144, 1470, 2002, 2017 |
| Sau96I | GGNCC | 4 cut(s) | 247, 725, 1232, 1933 |
| ScaI | AGTACT | 1 cut(s) | 1846 |
| SchI | GAGTC | 6 cut(s) | 128, 152, 153, 332, 560, 2153 |
| ScrFI | CCNGG | 4 cut(s) | 722, 723, 1534, 1937 |
| SduI | GDGCHC | 5 cut(s) | 54, 444, 794, 934, 1378 |
| SfaNI | GCATC | 4 cut(s) | 684, 1321, 1756, 2119 |
| SfcI | CTRYAG | 2 cut(s) | 1024, 1965 |
| Sfr274I | CTCGAG | 1 cut(s) | 2141 |
| SfuI | TTCGAA | 1 cut(s) | 24 |
| SinI | GGWCC | 3 cut(s) | 247, 725, 1232 |
| SlaI | CTCGAG | 1 cut(s) | 2141 |
| SmaI | CCCGGG | 1 cut(s) | 723 |
| SmlI | CTYRAG | 3 cut(s) | 572, 779, 2141 |
| SmoI | CTYRAG | 3 cut(s) | 572, 779, 2141 |
| SpeI | ACTAGT | 1 cut(s) | 1489 |
| SphI | GCATGC | 1 cut(s) | 1911 |
| Sse9I | AATT | 3 cut(s) | 1402, 1587, 1998 |
| SsiI | CCGC | 9 cut(s) | 76, 107, 250, 314, 371, 425, 878, 1435, 2133 |
| SspMI | CTAG | 3 cut(s) | 662, 1490, 2066 |
| SstI | GAGCTC | 2 cut(s) | 444, 1378 |
| StyD4I | CCNGG | 4 cut(s) | 720, 721, 1532, 1935 |
| StyI | CCWWGG | 1 cut(s) | 445 |
| TaaI | ACNGT | 5 cut(s) | 929, 1412, 1508, 1966, 2083 |
| TaiI | ACGT | 7 cut(s) | 237, 387, 689, 967, 1252, 1778, 1812 |
| TasI | AATT | 3 cut(s) | 1402, 1587, 1998 |
| TatI | WGTACW | 2 cut(s) | 1571, 1844 |
| TauI | GCSGC | 4 cut(s) | 109, 880, 1438, 2135 |
| TfiI | GAWTC | 2 cut(s) | 185, 955 |
| Tru1I | TTAA | 9 cut(s) | 177, 528, 597, 780, 888, 1172, 1184, 1608, 1949 |
| Tru9I | TTAA | 9 cut(s) | 177, 528, 597, 780, 888, 1172, 1184, 1608, 1949 |
| TscAI | CASTG | 6 cut(s) | 934, 977, 1513, 1657, 1737, 1775 |
| TseFI | GTSAC | 4 cut(s) | 259, 511, 1648, 2068 |
| TseI | GCWGC | 4 cut(s) | 9, 824, 1190, 1364 |
| Tsp45I | GTSAC | 4 cut(s) | 259, 511, 1648, 2068 |
| TspDTI | ATGAA | 5 cut(s) | 17, 1232, 1613, 2103, 2181 |
| TspGWI | ACGGA | 1 cut(s) | 286 |
| TspMI | CCCGGG | 1 cut(s) | 721 |
| TspRI | CASTG | 6 cut(s) | 934, 977, 1513, 1657, 1737, 1775 |
| Tth111I | GACNNNGTC | 3 cut(s) | 233, 236, 386 |
| Vha464I | CTTAAG | 1 cut(s) | 779 |
| VneI | GTGCAC | 1 cut(s) | 930 |
| VpaK11BI | GGWCC | 3 cut(s) | 247, 725, 1232 |
| VspI | ATTAAT | 1 cut(s) | 528 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 502 |
| XceI | RCATGY | 2 cut(s) | 540, 1911 |
| XhoI | CTCGAG | 1 cut(s) | 2141 |
| XmaI | CCCGGG | 1 cut(s) | 721 |
| XmiI | GTMKAC | 1 cut(s) | 326 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1722 |
| XspI | CTAG | 3 cut(s) | 662, 1490, 2066 |
| ZraI | GACGTC | 3 cut(s) | 235, 385, 1776 |
| ZrmI | AGTACT | 1 cut(s) | 1846 |