Prupe.1G348500_v2.0.a1

Isochorismatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016656
Physical Location & Seq
Reverse (-)
32541565 .. 32542167
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G348500.1

Sequence Viewer

Length: 603 bp
ATGGCCTCCTCCTCATACGAAAAATACGACGTCAGAAAAAGGAACCCAAATCCAAAAGTGGCAGCTCTTCTAGTCATCGACGTGCAGAACTACTTCTCCTCCATCGCCCAGCCCATCCTCCAAAACCTCCTCACCACCATCCGCCTCTGCCGACGCGCCTCCATCCCCGTCATCTTCACCCGCCACTCTCACAAGTCCCCTTCCGACTACGGCATGCTCGACGAGTGGTGGCGCGGCGACCTCATCTTCGACGGCACCCCCGAATCCCACCTCATGCCCGAGCTCAACCCCAACGCCCAGGACCACGTCGTCCACAAGAACACGTACAGCGCCTTCAGGAACACGCGCCTCCAGGAATACTTGCAGGAGAGGGGCGTGGAGGAGCTCATCGTCACCGGCGTCATGACCAACTTGTGCTGCGAAACGACGGCGCGTGATGCCTTCGTTAGAGGGTTCCGAGTGTTTTTCTCAACTGACGCGACTGGGACGTCAGATCCAGAGCTGCACGAGGCCACCTTGAAGAACTTGGCTTATGGGTTTGCCTACTTGGTGGATTGCAACAGGCTTGAGGGGGGACTTTTTCCCAATCAACAACTTACTTAA

Protein Analysis

201

Amino Acids

22.78

Weight (kDa)

6.06

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016656)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23220 AT5G23230
malus_domestica MD16G1003500.v1.1
prunus_persica Prupe.1G348500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0446811
rosa_laevigata RLG00000005628
rosa_multiflora Rmu_co8267649.1_g000001 Rmu_sc0001753.1_g000021
rosa_rugosa Rorug04G0374900
rosa_samantha Rh4AG436400 Rh4BG445500 Rh4CG462800 Rh4DG444200
rosa_wichuraiana Rw4G037320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 308, 487
AatII GACGTC 2 cut(s) 33, 491
AccB1I GGYRCC 1 cut(s) 254
AccII CGCG 5 cut(s) 156, 234, 346, 433, 479
AciI CCGC 3 cut(s) 142, 181, 234
AclWI GGATC 1 cut(s) 488
AcuI CTGAAG 1 cut(s) 319
AcyI GRCGYC 3 cut(s) 30, 399, 488
AfaI GTAC 1 cut(s) 326
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 1 cut(s) 520
AjiI CACGTC 2 cut(s) 82, 307
AjnI CCWGG 2 cut(s) 297, 351
AloI GAACNNNNNNTCC 2 cut(s) 80, 112
AluBI AGCT 4 cut(s) 65, 283, 385, 502
AluI AGCT 4 cut(s) 65, 283, 385, 502
Alw21I GWGCWC 2 cut(s) 285, 387
AlwI GGATC 1 cut(s) 488
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 2 cut(s) 3, 510
ApeKI GCWGC 3 cut(s) 62, 417, 502
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
Asp700I GAANNNNTTC 1 cut(s) 92
AspLEI GCGC 5 cut(s) 158, 234, 332, 348, 433
AspS9I GGNCC 1 cut(s) 301
AsuHPI GGTGA 3 cut(s) 124, 169, 385
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 1 cut(s) 301
BanI GGYRCC 1 cut(s) 254
BanII GRGCYC 2 cut(s) 285, 387
BarI GAAGNNNNNNTAC 2 cut(s) 317, 349
BauI CACGAG 1 cut(s) 506
Bbv12I GWGCWC 2 cut(s) 285, 387
BbvI GCAGC 3 cut(s) 74, 404, 489
BccI CCATC 4 cut(s) 110, 122, 146, 170
BceAI ACGGC 3 cut(s) 226, 268, 444
BciT130I CCWGG 2 cut(s) 299, 353
BfaI CTAG 1 cut(s) 71
BfoI RGCGCY 1 cut(s) 333
BisI GCNGC 4 cut(s) 63, 235, 418, 503
BlsI GCNGC 4 cut(s) 64, 236, 419, 504
Bme1390I CCNGG 2 cut(s) 299, 353
Bme18I GGWCC 1 cut(s) 301
BmeT110I CYCGRG 1 cut(s) 278
BmgBI CACGTC 2 cut(s) 82, 307
BmgT120I GGNCC 1 cut(s) 301
BmiI GGNNCC 3 cut(s) 44, 256, 455
BmrFI CCNGG 2 cut(s) 299, 353
BmrI ACTGGG 1 cut(s) 492
BmsI GCATC 1 cut(s) 427
BmuI ACTGGG 1 cut(s) 492
BpmI CTGGAG 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 587
BsaAI YACGTR 1 cut(s) 324
BsaHI GRCGYC 3 cut(s) 30, 399, 488
BsaJI CCNNGG 1 cut(s) 297
BsaXI ACNNNNNCTCC 4 cut(s) 80, 83, 110, 113
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 1 cut(s) 487
BseBI CCWGG 2 cut(s) 299, 353
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 3 cut(s) 114, 138, 162
BseNI ACTGG 1 cut(s) 487
BseRI GAGGAG 3 cut(s) 88, 119, 395
BseXI GCAGC 3 cut(s) 74, 404, 489
BseYI CCCAGC 1 cut(s) 108
BsgI GTGCAG 2 cut(s) 104, 488
Bsh1236I CGCG 5 cut(s) 156, 234, 346, 433, 479
BshFI GGCC 2 cut(s) 5, 512
BshNI GGYRCC 1 cut(s) 254
BsiHKAI GWGCWC 2 cut(s) 285, 387
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 1 cut(s) 396
BslFI GGGAC 3 cut(s) 181, 499, 588
BsmFI GGGAC 3 cut(s) 181, 499, 588
BsnI GGCC 2 cut(s) 5, 512
BsoBI CYCGRG 1 cut(s) 278
Bsp1286I GDGCHC 2 cut(s) 285, 387
Bsp143I GATC 1 cut(s) 493
BspACI CCGC 3 cut(s) 142, 181, 234
BspANI GGCC 2 cut(s) 5, 512
BspFNI CGCG 5 cut(s) 156, 234, 346, 433, 479
BspHI TCATGA 1 cut(s) 402
BspLI GGNNCC 3 cut(s) 44, 256, 455
BspPI GGATC 1 cut(s) 488
BspQI GCTCTTC 1 cut(s) 72
BspT107I GGYRCC 1 cut(s) 254
BsrFI RCCGGY 1 cut(s) 395
BsrI ACTGG 1 cut(s) 487
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 1 cut(s) 493
BssNI GRCGYC 3 cut(s) 30, 399, 488
BssSI CACGAG 1 cut(s) 506
Bst2BI CACGAG 1 cut(s) 506
Bst2UI CCWGG 2 cut(s) 299, 353
Bst6I CTCTTC 1 cut(s) 72
BstACI GRCGYC 3 cut(s) 30, 399, 488
BstBAI YACGTR 1 cut(s) 324
BstC8I GCNNGC 1 cut(s) 215
BstF5I GGATG 3 cut(s) 114, 138, 162
BstFNI CGCG 5 cut(s) 156, 234, 346, 433, 479
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 5 cut(s) 158, 234, 332, 348, 433
BstKTI GATC 1 cut(s) 496
BstMBI GATC 1 cut(s) 493
BstMWI GCNNNNNNNGC 1 cut(s) 437
BstNI CCWGG 2 cut(s) 299, 353
BstNSI RCATGY 1 cut(s) 217
BstSCI CCNGG 2 cut(s) 297, 351
BstUI CGCG 5 cut(s) 156, 234, 346, 433, 479
BstV1I GCAGC 3 cut(s) 74, 404, 489
BstX2I RGATCY 1 cut(s) 493
BstYI RGATCY 1 cut(s) 493
BsuRI GGCC 2 cut(s) 5, 512
BtgZI GCGATG 1 cut(s) 88
BtrI CACGTC 2 cut(s) 82, 307
BtsCI GGATG 3 cut(s) 114, 138, 162
Cac8I GCNNGC 1 cut(s) 215
CciI TCATGA 1 cut(s) 402
CfoI GCGC 5 cut(s) 158, 234, 332, 348, 433
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 1 cut(s) 301
CseI GACGC 3 cut(s) 162, 388, 485
Csp6I GTAC 1 cut(s) 325
CviAII CATG 3 cut(s) 214, 274, 403
CviJI RGCY 9 cut(s) 5, 65, 112, 283, 385, 502, 512, 530, 565
CviKI_1 RGCY 9 cut(s) 5, 65, 112, 283, 385, 502, 512, 530, 565
CviQI GTAC 1 cut(s) 325
DpnI GATC 1 cut(s) 495
DpnII GATC 1 cut(s) 493
DrdI GACNNNNNNGTC 2 cut(s) 308, 487
DseDI GACNNNNNNGTC 2 cut(s) 308, 487
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
EciI GGCGGA 1 cut(s) 131
Ecl136II GAGCTC 2 cut(s) 283, 385
Eco24I GRGCYC 2 cut(s) 285, 387
Eco47I GGWCC 1 cut(s) 301
Eco53kI GAGCTC 2 cut(s) 283, 385
Eco57I CTGAAG 1 cut(s) 319
Eco88I CYCGRG 1 cut(s) 278
EcoICRI GAGCTC 2 cut(s) 283, 385
EcoRII CCWGG 2 cut(s) 297, 351
EcoT38I GRGCYC 2 cut(s) 285, 387
FaeI CATG 3 cut(s) 217, 277, 406
FaiI YATR 5 cut(s) 16, 215, 275, 404, 534
FaqI GGGAC 3 cut(s) 181, 499, 588
FatI CATG 3 cut(s) 213, 273, 402
FauI CCCGC 1 cut(s) 188
Fnu4HI GCNGC 4 cut(s) 63, 235, 418, 503
FokI GGATG 3 cut(s) 101, 125, 149
FriOI GRGCYC 2 cut(s) 285, 387
Fsp4HI GCNGC 4 cut(s) 63, 235, 418, 503
FspBI CTAG 1 cut(s) 71
GlaI GCGC 5 cut(s) 157, 233, 331, 347, 432
GluI GCNGC 4 cut(s) 63, 235, 418, 503
GsaI CCCAGC 1 cut(s) 112
GsuI CTGGAG 1 cut(s) 335
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 2 cut(s) 5, 512
HapII CCGG 1 cut(s) 396
HgaI GACGC 3 cut(s) 162, 388, 485
HhaI GCGC 5 cut(s) 158, 234, 332, 348, 433
Hin1I GRCGYC 3 cut(s) 30, 399, 488
Hin1II CATG 3 cut(s) 217, 277, 406
Hin6I GCGC 5 cut(s) 156, 232, 330, 346, 431
HinP1I GCGC 5 cut(s) 156, 232, 330, 346, 431
HinfI GANTC 1 cut(s) 263
HpaII CCGG 1 cut(s) 396
HphI GGTGA 3 cut(s) 124, 169, 385
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 4 cut(s) 35, 205, 458, 493
Hpy188III TCNNGA 3 cut(s) 337, 403, 497
Hpy8I GTNNAC 1 cut(s) 313
Hpy99I CGWCG 7 cut(s) 32, 83, 156, 224, 254, 311, 430
HpyAV CCTTC 3 cut(s) 210, 343, 451
HpyCH4IV ACGT 5 cut(s) 30, 81, 306, 323, 488
HpyCH4V TGCA 4 cut(s) 85, 364, 505, 558
HpyF10VI GCNNNNNNNGC 1 cut(s) 437
HpySE526I ACGT 5 cut(s) 30, 81, 306, 323, 488
Hsp92I GRCGYC 3 cut(s) 30, 399, 488
Hsp92II CATG 3 cut(s) 217, 277, 406
HspAI GCGC 5 cut(s) 156, 232, 330, 346, 431
Kzo9I GATC 1 cut(s) 493
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 1 cut(s) 382
Lsp1109I GCAGC 3 cut(s) 74, 404, 489
LweI GCATC 1 cut(s) 427
MaeI CTAG 1 cut(s) 71
MaeII ACGT 5 cut(s) 30, 81, 306, 323, 488
MaeIII GTNAC 1 cut(s) 391
MalI GATC 1 cut(s) 495
MboI GATC 1 cut(s) 493
MboII GAAGA 4 cut(s) 59, 166, 238, 532
MflI RGATCY 1 cut(s) 493
MhlI GDGCHC 2 cut(s) 285, 387
MmeI TCCRAC 1 cut(s) 228
MroXI GAANNNNTTC 1 cut(s) 92
MseI TTAA 1 cut(s) 601
MslI CAYNNNNRTG 1 cut(s) 80
MspI CCGG 1 cut(s) 396
MspR9I CCNGG 2 cut(s) 299, 353
MvaI CCWGG 2 cut(s) 299, 353
MvnI CGCG 5 cut(s) 156, 234, 346, 433, 479
MwoI GCNNNNNNNGC 1 cut(s) 437
NdeII GATC 1 cut(s) 493
NlaIII CATG 3 cut(s) 217, 277, 406
NlaIV GGNNCC 3 cut(s) 44, 256, 455
NmuCI GTSAC 1 cut(s) 391
NspI RCATGY 1 cut(s) 217
PaeI GCATGC 1 cut(s) 217
PagI TCATGA 1 cut(s) 402
PciSI GCTCTTC 1 cut(s) 72
PcsI WCGNNNNNNNCGW 4 cut(s) 24, 216, 258, 396
PdmI GAANNNNTTC 1 cut(s) 92
PfeI GAWTC 1 cut(s) 263
PflFI GACNNNGTC 1 cut(s) 305
PfoI TCCNGGA 1 cut(s) 351
PkrI GCNGC 4 cut(s) 64, 236, 419, 504
Ppu21I YACGTR 1 cut(s) 324
Psp124BI GAGCTC 2 cut(s) 285, 387
Psp6I CCWGG 2 cut(s) 297, 351
PspFI CCCAGC 1 cut(s) 108
PspGI CCWGG 2 cut(s) 297, 351
PspN4I GGNNCC 3 cut(s) 44, 256, 455
PspPI GGNCC 1 cut(s) 301
PsuI RGATCY 1 cut(s) 493
PsyI GACNNNGTC 1 cut(s) 305
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 80
SacI GAGCTC 2 cut(s) 285, 387
SapI GCTCTTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 601
SatI GCNGC 4 cut(s) 63, 235, 418, 503
Sau3AI GATC 1 cut(s) 493
Sau96I GGNCC 1 cut(s) 301
ScrFI CCNGG 2 cut(s) 299, 353
SduI GDGCHC 2 cut(s) 285, 387
SfaNI GCATC 1 cut(s) 427
SgrAI CRCCGGYG 1 cut(s) 395
SinI GGWCC 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
SphI GCATGC 1 cut(s) 217
SsiI CCGC 3 cut(s) 142, 181, 234
SspMI CTAG 1 cut(s) 71
SstI GAGCTC 2 cut(s) 285, 387
StyD4I CCNGG 2 cut(s) 297, 351
TaiI ACGT 5 cut(s) 33, 84, 309, 326, 491
TaqI TCGA 3 cut(s) 78, 219, 249
TauI GCSGC 1 cut(s) 237
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 1 cut(s) 601
Tru9I TTAA 1 cut(s) 601
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 3 cut(s) 62, 417, 502
Tsp45I GTSAC 1 cut(s) 391
Tth111I GACNNNGTC 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 301
XceI RCATGY 1 cut(s) 217
XmnI GAANNNNTTC 1 cut(s) 92
XspI CTAG 1 cut(s) 71
ZraI GACGTC 2 cut(s) 31, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.