Rmu_sc0001753.1_g000021

Isochorismatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001753.1
OG0016656
Physical Location & Seq
Forward (+)
94104 .. 94697
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001753.1_g000021.1.cds

Sequence Viewer

Length: 594 bp
atggcttcctcctcgacctcgtacaaagagtacgagatcagaaaaagaaacccaaacccgaaagtggctgcccttttagtcatcgacatgcagaactacttcgccgccatggctaagcctatcctccaaaacctcctcaccaccatccgtctctgccgacgcgcttccatccccgtcatcttcacgcgccactcccacaagtccccctccgactatggcatgctggacgagtggtggaacggcgacctcgtcttcgacgggactcccgagtcccagctgatgcccgagctcgaccgcaggccccaccaggaccacctcgtcgacaacaagaacacctacagcgccttccgcggcacgggcctcgaggactatttgaaggagaggggcgtccaggaggtcatcgtcaccggcgtcatgaccaacttgtgctgcgaaacgacggcgcgtgaggccttcgtccggggcttcagagtgttcttttctacggacgccactgccacttcggatgaagagctgcacgaggccaccttgaagaacttggcctatggctttgcctacctcgtcgattgcaacagacttgatcaagctctttag

Protein Analysis

197

Amino Acids

22.44

Weight (kDa)

5.74

Isoelectric Point (pI)

32.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016656)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23220 AT5G23230
malus_domestica MD16G1003500.v1.1
prunus_persica Prupe.1G348500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0446811
rosa_laevigata RLG00000005628
rosa_multiflora Rmu_co8267649.1_g000001 Rmu_sc0001753.1_g000021
rosa_rugosa Rorug04G0374900
rosa_samantha Rh4AG436400 Rh4BG445500 Rh4CG462800 Rh4DG444200
rosa_wichuraiana Rw4G037320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 268, 317
AbsI CCTCGAGG 1 cut(s) 362
AccI GTMKAC 1 cut(s) 321
AccII CGCG 4 cut(s) 162, 187, 351, 445
AciI CCGC 4 cut(s) 105, 295, 349, 351
AcuI CTGAAG 1 cut(s) 451
AcyI GRCGYC 3 cut(s) 387, 411, 489
AfaI GTAC 2 cut(s) 23, 32
AfiI CCNNNNNNNGG 3 cut(s) 64, 355, 459
AgsI TTSAA 2 cut(s) 376, 532
AjnI CCWGG 2 cut(s) 306, 390
AluBI AGCT 4 cut(s) 277, 289, 514, 587
AluI AGCT 4 cut(s) 277, 289, 514, 587
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 155
Ama87I CYCGRG 3 cut(s) 266, 284, 362
AoxI GGCC 5 cut(s) 299, 358, 450, 522, 540
ApeKI GCWGC 3 cut(s) 68, 429, 514
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
Asp700I GAANNNNTTC 1 cut(s) 98
AspLEI GCGC 4 cut(s) 164, 189, 344, 445
AspS9I GGNCC 3 cut(s) 300, 310, 358
AsuC2I CCSGG 1 cut(s) 461
AsuHPI GGTGA 2 cut(s) 130, 397
AvaI CYCGRG 3 cut(s) 266, 284, 362
AvaII GGWCC 1 cut(s) 310
BanII GRGCYC 1 cut(s) 291
BauI CACGAG 1 cut(s) 518
BbsI GAAGAC 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 3 cut(s) 55, 416, 501
BccI CCATC 2 cut(s) 152, 176
BceAI ACGGC 2 cut(s) 256, 456
BcgI CGANNNNNNTGC 2 cut(s) 343, 377
BciT130I CCWGG 2 cut(s) 308, 392
BclI TGATCA 1 cut(s) 580
BcnI CCSGG 1 cut(s) 461
BcoDI GTCTC 1 cut(s) 155
BfmI CTRYAG 1 cut(s) 337
BfoI RGCGCY 1 cut(s) 345
BglI GCCNNNNNGGC 1 cut(s) 110
BisI GCNGC 5 cut(s) 69, 105, 352, 430, 515
BlpI GCTNAGC 1 cut(s) 114
BlsI GCNGC 5 cut(s) 70, 106, 353, 431, 516
Bme1390I CCNGG 3 cut(s) 308, 392, 461
Bme18I GGWCC 1 cut(s) 310
BmeT110I CYCGRG 3 cut(s) 266, 284, 362
BmgT120I GGNCC 3 cut(s) 300, 310, 358
BmiI GGNNCC 1 cut(s) 302
BmrFI CCNGG 3 cut(s) 308, 392, 461
BmsI GCATC 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 244
Bpu1102I GCTNAGC 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 461
BsaHI GRCGYC 3 cut(s) 387, 411, 489
BsaJI CCNNGG 3 cut(s) 108, 349, 460
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 355, 459
Bse118I RCCGGY 1 cut(s) 407
BseBI CCWGG 2 cut(s) 308, 392
BseDI CCNNGG 3 cut(s) 108, 349, 460
BseGI GGATG 3 cut(s) 144, 168, 511
BseLI CCNNNNNNNGG 3 cut(s) 64, 355, 459
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 3 cut(s) 55, 416, 501
BseYI CCCAGC 1 cut(s) 273
BsgI GTGCAG 1 cut(s) 500
Bsh1236I CGCG 4 cut(s) 162, 187, 351, 445
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 5 cut(s) 301, 360, 452, 524, 542
BsiEI CGRYCG 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 291
BsiHKCI CYCGRG 3 cut(s) 266, 284, 362
BsiSI CCGG 2 cut(s) 408, 460
BslFI GGGAC 3 cut(s) 187, 256, 274
BslI CCNNNNNNNGG 3 cut(s) 64, 355, 459
BsmAI GTCTC 1 cut(s) 155
BsmBI CGTCTC 1 cut(s) 155
BsmFI GGGAC 3 cut(s) 187, 256, 274
BsnI GGCC 5 cut(s) 301, 360, 452, 524, 542
BsoBI CYCGRG 3 cut(s) 266, 284, 362
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 2 cut(s) 36, 580
Bsp1720I GCTNAGC 1 cut(s) 114
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 4 cut(s) 105, 295, 349, 351
BspANI GGCC 5 cut(s) 301, 360, 452, 524, 542
BspFNI CGCG 4 cut(s) 162, 187, 351, 445
BspHI TCATGA 1 cut(s) 414
BspLI GGNNCC 1 cut(s) 302
BspQI GCTCTTC 1 cut(s) 504
BsrFI RCCGGY 1 cut(s) 407
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 3 cut(s) 108, 349, 460
BssMI GATC 2 cut(s) 36, 580
BssNI GRCGYC 3 cut(s) 387, 411, 489
BssSI CACGAG 1 cut(s) 518
BssT1I CCWWGG 1 cut(s) 108
Bst2BI CACGAG 1 cut(s) 518
Bst2UI CCWGG 2 cut(s) 308, 392
Bst6I CTCTTC 1 cut(s) 504
BstACI GRCGYC 3 cut(s) 387, 411, 489
BstC8I GCNNGC 2 cut(s) 221, 299
BstDEI CTNAG 1 cut(s) 114
BstDSI CCRYGG 2 cut(s) 108, 349
BstF5I GGATG 3 cut(s) 144, 168, 511
BstFNI CGCG 4 cut(s) 162, 187, 351, 445
BstH2I RGCGCY 1 cut(s) 345
BstHHI GCGC 4 cut(s) 164, 189, 344, 445
BstKTI GATC 2 cut(s) 39, 583
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 2 cut(s) 36, 580
BstMCI CGRYCG 1 cut(s) 295
BstMWI GCNNNNNNNGC 4 cut(s) 110, 348, 357, 449
BstNI CCWGG 2 cut(s) 308, 392
BstNSI RCATGY 2 cut(s) 91, 223
BstSCI CCNGG 3 cut(s) 306, 390, 459
BstSFI CTRYAG 1 cut(s) 337
BstUI CGCG 4 cut(s) 162, 187, 351, 445
BstV1I GCAGC 3 cut(s) 55, 416, 501
BstV2I GAAGAC 1 cut(s) 244
BsuRI GGCC 5 cut(s) 301, 360, 452, 524, 542
BtgI CCRYGG 2 cut(s) 108, 349
BtsCI GGATG 3 cut(s) 144, 168, 511
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 1 cut(s) 492
Cac8I GCNNGC 2 cut(s) 221, 299
CciI TCATGA 1 cut(s) 414
CfoI GCGC 4 cut(s) 164, 189, 344, 445
Cfr10I RCCGGY 1 cut(s) 407
Cfr13I GGNCC 3 cut(s) 300, 310, 358
Cfr42I CCGCGG 1 cut(s) 352
CseI GACGC 4 cut(s) 168, 376, 400, 497
Csp6I GTAC 2 cut(s) 22, 31
CviAII CATG 4 cut(s) 88, 109, 220, 415
CviQI GTAC 2 cut(s) 22, 31
DdeI CTNAG 1 cut(s) 114
DpnI GATC 2 cut(s) 38, 582
DpnII GATC 2 cut(s) 36, 580
DrdI GACNNNNNNGTC 2 cut(s) 268, 317
DseDI GACNNNNNNGTC 2 cut(s) 268, 317
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 108
Eco147I AGGCCT 1 cut(s) 452
Eco24I GRGCYC 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 310
Eco53kI GAGCTC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 451
Eco88I CYCGRG 3 cut(s) 266, 284, 362
EcoICRI GAGCTC 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 300
EcoRII CCWGG 2 cut(s) 306, 390
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 4 cut(s) 91, 112, 223, 418
FaiI YATR 6 cut(s) 89, 110, 216, 221, 416, 546
FaqI GGGAC 3 cut(s) 187, 256, 274
FatI CATG 4 cut(s) 87, 108, 219, 414
FbaI TGATCA 1 cut(s) 580
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 5 cut(s) 69, 105, 352, 430, 515
FokI GGATG 3 cut(s) 131, 155, 518
FriOI GRGCYC 1 cut(s) 291
Fsp4HI GCNGC 5 cut(s) 69, 105, 352, 430, 515
GlaI GCGC 4 cut(s) 163, 188, 343, 444
GluI GCNGC 5 cut(s) 69, 105, 352, 430, 515
GsaI CCCAGC 1 cut(s) 277
HaeII RGCGCY 1 cut(s) 345
HaeIII GGCC 5 cut(s) 301, 360, 452, 524, 542
HapII CCGG 2 cut(s) 408, 460
HgaI GACGC 4 cut(s) 168, 376, 400, 497
HhaI GCGC 4 cut(s) 164, 189, 344, 445
Hin1I GRCGYC 3 cut(s) 387, 411, 489
Hin1II CATG 4 cut(s) 91, 112, 223, 418
Hin6I GCGC 4 cut(s) 162, 187, 342, 443
HinP1I GCGC 4 cut(s) 162, 187, 342, 443
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 2 cut(s) 262, 269
HpaII CCGG 2 cut(s) 408, 460
HphI GGTGA 2 cut(s) 130, 397
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 4 cut(s) 41, 211, 470, 505
Hpy188III TCNNGA 2 cut(s) 266, 415
Hpy8I GTNNAC 1 cut(s) 322
Hpy99I CGWCG 5 cut(s) 162, 260, 323, 442, 566
HpyAV CCTTC 3 cut(s) 355, 370, 463
HpyCH4V TGCA 3 cut(s) 91, 517, 570
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 348, 357, 449
HpyF3I CTNAG 1 cut(s) 114
Hsp92I GRCGYC 3 cut(s) 387, 411, 489
Hsp92II CATG 4 cut(s) 91, 112, 223, 418
HspAI GCGC 4 cut(s) 162, 187, 342, 443
Ksp22I TGATCA 1 cut(s) 580
KspI CCGCGG 1 cut(s) 352
Kzo9I GATC 2 cut(s) 36, 580
LguI GCTCTTC 1 cut(s) 504
LpnPI CCDG 9 cut(s) 209, 283, 287, 293, 320, 377, 404, 421, 473
Lsp1109I GCAGC 3 cut(s) 55, 416, 501
LweI GCATC 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 403
MalI GATC 2 cut(s) 38, 582
MboI GATC 2 cut(s) 36, 580
MboII GAAGA 4 cut(s) 172, 244, 521, 544
MhlI GDGCHC 1 cut(s) 291
MlyI GAGTC 2 cut(s) 256, 278
MmeI TCCRAC 1 cut(s) 234
MroXI GAANNNNTTC 1 cut(s) 98
MslI CAYNNNNRTG 1 cut(s) 86
MspA1I CMGCKG 2 cut(s) 277, 351
MspI CCGG 2 cut(s) 408, 460
MspR9I CCNGG 3 cut(s) 308, 392, 461
MvaI CCWGG 2 cut(s) 308, 392
MvnI CGCG 4 cut(s) 162, 187, 351, 445
MwoI GCNNNNNNNGC 4 cut(s) 110, 348, 357, 449
NciI CCSGG 1 cut(s) 461
NcoI CCATGG 1 cut(s) 108
NdeII GATC 2 cut(s) 36, 580
NlaIII CATG 4 cut(s) 91, 112, 223, 418
NlaIV GGNNCC 1 cut(s) 302
NmuCI GTSAC 1 cut(s) 403
NspI RCATGY 2 cut(s) 91, 223
PaeI GCATGC 1 cut(s) 223
PaeR7I CTCGAG 1 cut(s) 362
PagI TCATGA 1 cut(s) 414
PceI AGGCCT 1 cut(s) 452
PciSI GCTCTTC 1 cut(s) 504
PcsI WCGNNNNNNNCGW 3 cut(s) 246, 264, 408
PdmI GAANNNNTTC 1 cut(s) 98
PflFI GACNNNGTC 1 cut(s) 248
PfoI TCCNGGA 1 cut(s) 390
PkrI GCNGC 5 cut(s) 70, 106, 353, 431, 516
PleI GAGTC 2 cut(s) 256, 277
PpsI GAGTC 2 cut(s) 256, 277
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 2 cut(s) 306, 390
PspFI CCCAGC 1 cut(s) 273
PspGI CCWGG 2 cut(s) 306, 390
PspN4I GGNNCC 1 cut(s) 302
PspPI GGNCC 3 cut(s) 300, 310, 358
PspXI VCTCGAGB 1 cut(s) 362
PsyI GACNNNGTC 1 cut(s) 248
PvuII CAGCTG 1 cut(s) 277
RsaI GTAC 2 cut(s) 23, 32
RsaNI GTAC 2 cut(s) 22, 31
RseI CAYNNNNRTG 1 cut(s) 86
SacI GAGCTC 1 cut(s) 291
SacII CCGCGG 1 cut(s) 352
SalI GTCGAC 1 cut(s) 320
SapI GCTCTTC 1 cut(s) 504
SatI GCNGC 5 cut(s) 69, 105, 352, 430, 515
Sau3AI GATC 2 cut(s) 36, 580
Sau96I GGNCC 3 cut(s) 300, 310, 358
SchI GAGTC 2 cut(s) 256, 278
ScrFI CCNGG 3 cut(s) 308, 392, 461
SduI GDGCHC 1 cut(s) 291
SfaNI GCATC 1 cut(s) 270
SfcI CTRYAG 1 cut(s) 337
Sfr274I CTCGAG 1 cut(s) 362
Sfr303I CCGCGG 1 cut(s) 352
SgrAI CRCCGGYG 1 cut(s) 407
SgrBI CCGCGG 1 cut(s) 352
SinI GGWCC 1 cut(s) 310
SlaI CTCGAG 1 cut(s) 362
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SphI GCATGC 1 cut(s) 223
SseBI AGGCCT 1 cut(s) 452
SsiI CCGC 4 cut(s) 105, 295, 349, 351
SstI GAGCTC 1 cut(s) 291
StuI AGGCCT 1 cut(s) 452
StyD4I CCNGG 3 cut(s) 306, 390, 459
StyI CCWWGG 1 cut(s) 108
TaqI TCGA 7 cut(s) 14, 84, 255, 291, 321, 363, 564
TauI GCSGC 2 cut(s) 107, 354
TscAI CASTG 1 cut(s) 499
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 3 cut(s) 68, 429, 514
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 1 cut(s) 522
TspGWI ACGGA 2 cut(s) 137, 500
TspRI CASTG 1 cut(s) 499
Tth111I GACNNNGTC 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 310
XceI RCATGY 2 cut(s) 91, 223
XhoI CTCGAG 1 cut(s) 362
XmiI GTMKAC 1 cut(s) 321
XmnI GAANNNNTTC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.