Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8267649.1

Orthogroup ID

OG0016656

Physical Location & Seq

Genomic Coordinates Forward (+)

82 .. 588

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8267649.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgcagaactacttcgccgccatggctaagcctatcctccaaaacctcctcaccaccatccgtctctgccgacgcgcttccatccccgtcatcttcacgcgccactcccagaagtccccctccgactatggcatgctggacgagtggtggaacggcgacctcgtcttcgacgggactcccgagtcccagctgatgcccgagctcgaccgcaggccccaccaggaccacctcgtcgacaacaagaacacctacagcgccttccgcggcacgggcctcgaggactatttgaaggagaggggcgtccaggaggtcatcgtcaccggcgtcatgaccaacttgtgctgcgaaacgacggcgcgtgaggccttcgtccggggcttcagagtgttcttttctacggacgccactgccacttcggatgaagagctgcacgaggccaccttgaagaacttggcctatggctttgcctacctcgtcgattgcaacagacttgatcaagctctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008936 GO:0009117 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0019362 GO:0019637 GO:0019674 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0071704 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Isochorismatase

Protein Analysis

168

Amino Acids

19.16

Weight (kDa)

5.18

Isoelectric Point (pI)

30.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23220 AT5G23230
malus_domestica	MD16G1003500.v1.1
prunus_persica	Prupe.1G348500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0446811
rosa_laevigata	RLG00000005628
rosa_multiflora	Rmu_co8267649.1_g000001 Rmu_sc0001753.1_g000021
rosa_rugosa	Rorug04G0374900
rosa_samantha	Rh4AG436400 Rh4BG445500 Rh4CG462800 Rh4DG444200
rosa_wichuraiana	Rw4G037320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	181, 230
AbsI	CCTCGAGG	1 cut(s)	275
AccI	GTMKAC	1 cut(s)	234
AccII	CGCG	4 cut(s)	75, 100, 264, 358
AciI	CCGC	4 cut(s)	18, 208, 262, 264
AcuI	CTGAAG	1 cut(s)	364
AcyI	GRCGYC	3 cut(s)	300, 324, 402
AfiI	CCNNNNNNNGG	2 cut(s)	268, 372
AgsI	TTSAA	2 cut(s)	289, 445
AjnI	CCWGG	2 cut(s)	219, 303
AluBI	AGCT	4 cut(s)	190, 202, 427, 500
AluI	AGCT	4 cut(s)	190, 202, 427, 500
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	1 cut(s)	68
Ama87I	CYCGRG	3 cut(s)	179, 197, 275
AoxI	GGCC	5 cut(s)	212, 271, 363, 435, 453
ApeKI	GCWGC	2 cut(s)	342, 427
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
Asp700I	GAANNNNTTC	1 cut(s)	11
AspLEI	GCGC	4 cut(s)	77, 102, 257, 358
AspS9I	GGNCC	3 cut(s)	213, 223, 271
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	2 cut(s)	43, 310
AvaI	CYCGRG	3 cut(s)	179, 197, 275
AvaII	GGWCC	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	204
BauI	CACGAG	1 cut(s)	431
BbsI	GAAGAC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	329, 414
BccI	CCATC	2 cut(s)	65, 89
BceAI	ACGGC	2 cut(s)	169, 369
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	2 cut(s)	221, 305
BclI	TGATCA	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	250
BfoI	RGCGCY	1 cut(s)	258
BglI	GCCNNNNNGGC	1 cut(s)	23
BisI	GCNGC	4 cut(s)	18, 265, 343, 428
BlpI	GCTNAGC	1 cut(s)	27
BlsI	GCNGC	4 cut(s)	19, 266, 344, 429
Bme1390I	CCNGG	3 cut(s)	221, 305, 374
Bme18I	GGWCC	1 cut(s)	223
BmeT110I	CYCGRG	3 cut(s)	179, 197, 275
BmgT120I	GGNCC	3 cut(s)	213, 223, 271
BmiI	GGNNCC	1 cut(s)	215
BmrFI	CCNGG	3 cut(s)	221, 305, 374
BmsI	GCATC	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	157
Bpu1102I	GCTNAGC	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	374
BsaHI	GRCGYC	3 cut(s)	300, 324, 402
BsaJI	CCNNGG	3 cut(s)	21, 262, 373
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 372
Bse118I	RCCGGY	1 cut(s)	320
BseBI	CCWGG	2 cut(s)	221, 305
BseDI	CCNNGG	3 cut(s)	21, 262, 373
BseGI	GGATG	3 cut(s)	57, 81, 424
BseLI	CCNNNNNNNGG	2 cut(s)	268, 372
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	329, 414
BseYI	CCCAGC	1 cut(s)	186
BsgI	GTGCAG	1 cut(s)	413
Bsh1236I	CGCG	4 cut(s)	75, 100, 264, 358
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	5 cut(s)	214, 273, 365, 437, 455
BsiEI	CGRYCG	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	204
BsiHKCI	CYCGRG	3 cut(s)	179, 197, 275
BsiSI	CCGG	2 cut(s)	321, 373
BslFI	GGGAC	3 cut(s)	100, 169, 187
BslI	CCNNNNNNNGG	2 cut(s)	268, 372
BsmAI	GTCTC	1 cut(s)	68
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	3 cut(s)	100, 169, 187
BsnI	GGCC	5 cut(s)	214, 273, 365, 437, 455
BsoBI	CYCGRG	3 cut(s)	179, 197, 275
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	1 cut(s)	493
Bsp1720I	GCTNAGC	1 cut(s)	27
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	4 cut(s)	18, 208, 262, 264
BspANI	GGCC	5 cut(s)	214, 273, 365, 437, 455
BspFNI	CGCG	4 cut(s)	75, 100, 264, 358
BspHI	TCATGA	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	215
BspQI	GCTCTTC	1 cut(s)	417
BsrFI	RCCGGY	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	3 cut(s)	21, 262, 373
BssMI	GATC	1 cut(s)	493
BssNI	GRCGYC	3 cut(s)	300, 324, 402
BssSI	CACGAG	1 cut(s)	431
BssT1I	CCWWGG	1 cut(s)	21
Bst2BI	CACGAG	1 cut(s)	431
Bst2UI	CCWGG	2 cut(s)	221, 305
Bst6I	CTCTTC	1 cut(s)	417
BstACI	GRCGYC	3 cut(s)	300, 324, 402
BstC8I	GCNNGC	2 cut(s)	134, 212
BstDEI	CTNAG	1 cut(s)	27
BstDSI	CCRYGG	2 cut(s)	21, 262
BstF5I	GGATG	3 cut(s)	57, 81, 424
BstFNI	CGCG	4 cut(s)	75, 100, 264, 358
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	4 cut(s)	77, 102, 257, 358
BstKTI	GATC	1 cut(s)	496
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	1 cut(s)	493
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 261, 270, 362
BstNI	CCWGG	2 cut(s)	221, 305
BstNSI	RCATGY	1 cut(s)	136
BstSCI	CCNGG	3 cut(s)	219, 303, 372
BstSFI	CTRYAG	1 cut(s)	250
BstUI	CGCG	4 cut(s)	75, 100, 264, 358
BstV1I	GCAGC	2 cut(s)	329, 414
BstV2I	GAAGAC	1 cut(s)	157
BsuRI	GGCC	5 cut(s)	214, 273, 365, 437, 455
BtgI	CCRYGG	2 cut(s)	21, 262
BtsCI	GGATG	3 cut(s)	57, 81, 424
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	2 cut(s)	134, 212
CciI	TCATGA	1 cut(s)	327
CfoI	GCGC	4 cut(s)	77, 102, 257, 358
Cfr10I	RCCGGY	1 cut(s)	320
Cfr13I	GGNCC	3 cut(s)	213, 223, 271
Cfr42I	CCGCGG	1 cut(s)	265
CseI	GACGC	4 cut(s)	81, 289, 313, 410
CviAII	CATG	3 cut(s)	22, 133, 328
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	1 cut(s)	495
DpnII	GATC	1 cut(s)	493
DrdI	GACNNNNNNGTC	2 cut(s)	181, 230
DseDI	GACNNNNNNGTC	2 cut(s)	181, 230
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Ecl136II	GAGCTC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	21
Eco147I	AGGCCT	1 cut(s)	365
Eco24I	GRGCYC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	223
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	364
Eco88I	CYCGRG	3 cut(s)	179, 197, 275
EcoICRI	GAGCTC	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	213
EcoRII	CCWGG	2 cut(s)	219, 303
EcoT14I	CCWWGG	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	3 cut(s)	25, 136, 331
FaiI	YATR	5 cut(s)	23, 129, 134, 329, 459
FaqI	GGGAC	3 cut(s)	100, 169, 187
FatI	CATG	3 cut(s)	21, 132, 327
FbaI	TGATCA	1 cut(s)	493
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	4 cut(s)	18, 265, 343, 428
FokI	GGATG	3 cut(s)	44, 68, 431
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	4 cut(s)	18, 265, 343, 428
GlaI	GCGC	4 cut(s)	76, 101, 256, 357
GluI	GCNGC	4 cut(s)	18, 265, 343, 428
GsaI	CCCAGC	1 cut(s)	190
HaeII	RGCGCY	1 cut(s)	258
HaeIII	GGCC	5 cut(s)	214, 273, 365, 437, 455
HapII	CCGG	2 cut(s)	321, 373
HgaI	GACGC	4 cut(s)	81, 289, 313, 410
HhaI	GCGC	4 cut(s)	77, 102, 257, 358
Hin1I	GRCGYC	3 cut(s)	300, 324, 402
Hin1II	CATG	3 cut(s)	25, 136, 331
Hin6I	GCGC	4 cut(s)	75, 100, 255, 356
HinP1I	GCGC	4 cut(s)	75, 100, 255, 356
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	2 cut(s)	175, 182
HpaII	CCGG	2 cut(s)	321, 373
HphI	GGTGA	2 cut(s)	43, 310
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	3 cut(s)	124, 383, 418
Hpy188III	TCNNGA	2 cut(s)	179, 328
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	5 cut(s)	75, 173, 236, 355, 479
HpyAV	CCTTC	3 cut(s)	268, 283, 376
HpyCH4V	TGCA	3 cut(s)	4, 430, 483
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 261, 270, 362
HpyF3I	CTNAG	1 cut(s)	27
Hsp92I	GRCGYC	3 cut(s)	300, 324, 402
Hsp92II	CATG	3 cut(s)	25, 136, 331
HspAI	GCGC	4 cut(s)	75, 100, 255, 356
Ksp22I	TGATCA	1 cut(s)	493
KspI	CCGCGG	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	493
LguI	GCTCTTC	1 cut(s)	417
Lsp1109I	GCAGC	2 cut(s)	329, 414
LweI	GCATC	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	1 cut(s)	495
MboI	GATC	1 cut(s)	493
MboII	GAAGA	4 cut(s)	85, 157, 434, 457
MhlI	GDGCHC	1 cut(s)	204
MlyI	GAGTC	2 cut(s)	169, 191
MmeI	TCCRAC	1 cut(s)	147
MroXI	GAANNNNTTC	1 cut(s)	11
MspA1I	CMGCKG	2 cut(s)	190, 264
MspI	CCGG	2 cut(s)	321, 373
MspR9I	CCNGG	3 cut(s)	221, 305, 374
MvaI	CCWGG	2 cut(s)	221, 305
MvnI	CGCG	4 cut(s)	75, 100, 264, 358
MwoI	GCNNNNNNNGC	4 cut(s)	23, 261, 270, 362
NciI	CCSGG	1 cut(s)	374
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	1 cut(s)	493
NlaIII	CATG	3 cut(s)	25, 136, 331
NlaIV	GGNNCC	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	316
NspI	RCATGY	1 cut(s)	136
PaeI	GCATGC	1 cut(s)	136
PaeR7I	CTCGAG	1 cut(s)	275
PagI	TCATGA	1 cut(s)	327
PceI	AGGCCT	1 cut(s)	365
PciSI	GCTCTTC	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	3 cut(s)	159, 177, 321
PdmI	GAANNNNTTC	1 cut(s)	11
PflFI	GACNNNGTC	1 cut(s)	161
PfoI	TCCNGGA	1 cut(s)	303
PkrI	GCNGC	4 cut(s)	19, 266, 344, 429
PleI	GAGTC	2 cut(s)	169, 190
PpsI	GAGTC	2 cut(s)	169, 190
Psp124BI	GAGCTC	1 cut(s)	204
Psp6I	CCWGG	2 cut(s)	219, 303
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	2 cut(s)	219, 303
PspN4I	GGNNCC	1 cut(s)	215
PspPI	GGNCC	3 cut(s)	213, 223, 271
PspXI	VCTCGAGB	1 cut(s)	275
PsyI	GACNNNGTC	1 cut(s)	161
PvuII	CAGCTG	1 cut(s)	190
SacI	GAGCTC	1 cut(s)	204
SacII	CCGCGG	1 cut(s)	265
SalI	GTCGAC	1 cut(s)	233
SapI	GCTCTTC	1 cut(s)	417
SatI	GCNGC	4 cut(s)	18, 265, 343, 428
Sau3AI	GATC	1 cut(s)	493
Sau96I	GGNCC	3 cut(s)	213, 223, 271
SchI	GAGTC	2 cut(s)	169, 191
ScrFI	CCNGG	3 cut(s)	221, 305, 374
SduI	GDGCHC	1 cut(s)	204
SfaNI	GCATC	1 cut(s)	183
SfcI	CTRYAG	1 cut(s)	250
Sfr274I	CTCGAG	1 cut(s)	275
Sfr303I	CCGCGG	1 cut(s)	265
SgrAI	CRCCGGYG	1 cut(s)	320
SgrBI	CCGCGG	1 cut(s)	265
SinI	GGWCC	1 cut(s)	223
SlaI	CTCGAG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SphI	GCATGC	1 cut(s)	136
SseBI	AGGCCT	1 cut(s)	365
SsiI	CCGC	4 cut(s)	18, 208, 262, 264
SstI	GAGCTC	1 cut(s)	204
StuI	AGGCCT	1 cut(s)	365
StyD4I	CCNGG	3 cut(s)	219, 303, 372
StyI	CCWWGG	1 cut(s)	21
TaqI	TCGA	5 cut(s)	168, 204, 234, 276, 477
TauI	GCSGC	2 cut(s)	20, 267
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	2 cut(s)	342, 427
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	435
TspGWI	ACGGA	2 cut(s)	50, 413
TspRI	CASTG	1 cut(s)	412
Tth111I	GACNNNGTC	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	223
XceI	RCATGY	1 cut(s)	136
XhoI	CTCGAG	1 cut(s)	275
XmiI	GTMKAC	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.