Prupe.1G371600_v2.0.a1

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017078
Physical Location & Seq
Reverse (-)
33867100 .. 33869336
2237 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G371600.1

Sequence Viewer

Length: 1104 bp
ATGGATCGCCCCACCACTCTCGTCCCCCTCCTCCTCTTCCTTTCTCTCCTGACCTCTGCACTCGCGTCCACCGTAACTCCTAACGACGCTGACCCTCTGATCCAACAAGTCGTACCGGAAGCCAACGACAATCTACTCCTCCACGCCGAGCGCCACTTCTCCAGCTTCAAAGCTACGTTCGGAAAGACCTACGCGACTCAAGAGGAGCACGACTACAGGTTCGGCGTCTTTAAGGCGAACCTGCGCCGAGCCAAGCGCCACCAGGGGCTCGACCCCACTGCCGTCCACGGTGTCACCAAGTTCTCCGATCTCACTCCGTCGGAGTTTCGCCGGAATTTTCTCGGACTAAAGCGTCTCCGGCTGCCATCAGACGCTAACAAGGCTCCCATCCTTCCTACCAATGATCTTCCCACCGACTTCGATTGGCGCGACAAAGGTGCTGTCACACCGGTGAAGGACCAGGGGTCTTGTGGGTCGTGCTGGGCATTTAGTGCGACGGGAGCTTTGGAAGGAGCTCATTATTTGCAAACAGGGGAGCTCTTGAGTCTTAGTGAGCAGCAGCTTGTGGACTGCGACCATGAGTGTGATCCAGAAGAATTTGGTTCATGCGACTCGGGGTGTAATGGTGGGCTGATGAACAATGCATTCGAGTACACACTCAAGGCTGGTGGACTAGAGCGAGAGAAGGACTATCCTTACACTGGGACTGATGATACCTGCAAATTTGACAAGAGCAAAGTTGTTGCTGCTGTATCTAACTTCAGCGTTATTTCCACAGACGAAGATCAAATTGCTGCAAATTTGGTGCACCATGGCCCACTTGCAGTTGGGATCAATGCCGTGTTCATGCAAACATACGTAAAGGGAGTTTCATGCCCTTACATCTGCGGAAAGCGTATCGATCATGGAGTGCTTCTGGTGGGGTATGGTTCTTCTGGTTTTGCTCCGATCCGATTTAAGGAGAAGCCTTACTGGATCTTGAAGAACTCATGGGGACAGAGTTGGGGAGAGGAGGGCTTTTACAAGATCTGCAGAGGTCATAATTCTTGTGGGGTGGATTCCTTGGTCTCCACTGTTGCGTCTCTGCATACATCCAATCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04210 map04142 map04210
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

368

Amino Acids

40.28

Weight (kDa)

5.9

Isoelectric Point (pI)

34.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16190
fragaria_vesca FvH4_2g38940
malus_domestica MD08G1021600.v1.1 MD15G1019300.v1.1
prunus_persica Prupe.1G371600_v2.0.a1
pyrus_communis pycom08g01710
rosa_chinensis RchiOBHm_Chr6g0302031
rosa_laevigata RLG00000011201
rosa_roxburghii Rroxscaffold_7G00166170
rosa_rugosa Rorug06G0311100
rosa_samantha Rh6BG478400 Rh6DG424000
rosa_wichuraiana Rw6G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 351
Acc36I ACCTGC 2 cut(s) 249, 725
AccII CGCG 3 cut(s) 65, 194, 429
AciI CCGC 1 cut(s) 888
AclWI GGATC 6 cut(s) 12, 94, 581, 839, 943, 983
AcsI RAATTY 4 cut(s) 334, 596, 722, 799
AcuI CTGAAG 1 cut(s) 745
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 2 cut(s) 114, 653
AfiI CCNNNNNNNGG 2 cut(s) 701, 958
AgeI ACCGGT 1 cut(s) 448
AgsI TTSAA 2 cut(s) 169, 982
AhdI GACNNNNNGTC 1 cut(s) 463
AjnI CCWGG 2 cut(s) 261, 459
AleI CACNNNNGTG 1 cut(s) 449
AluBI AGCT 6 cut(s) 165, 173, 503, 515, 538, 562
AluI AGCT 6 cut(s) 165, 173, 503, 515, 538, 562
Alw21I GWGCWC 4 cut(s) 210, 517, 540, 810
Alw26I GTCTC 3 cut(s) 359, 1072, 1086
Alw44I GTGCAC 1 cut(s) 806
AlwI GGATC 6 cut(s) 12, 94, 581, 839, 943, 983
Ama87I CYCGRG 1 cut(s) 613
AoxI GGCC 1 cut(s) 814
ApaLI GTGCAC 1 cut(s) 806
ApeKI GCWGC 5 cut(s) 361, 556, 559, 746, 794
ApoI RAATTY 4 cut(s) 334, 596, 722, 799
ArsI GACNNNNNNTTYG 6 cut(s) 203, 235, 426, 458, 487, 519
AsiGI ACCGGT 1 cut(s) 448
AspLEI GCGC 4 cut(s) 153, 246, 258, 429
AspS9I GGNCC 2 cut(s) 457, 815
AsuHPI GGTGA 2 cut(s) 286, 463
AvaI CYCGRG 1 cut(s) 613
AvaII GGWCC 1 cut(s) 457
BaeGI GKGCMC 1 cut(s) 810
BanII GRGCYC 3 cut(s) 270, 517, 540
Bbv12I GWGCWC 4 cut(s) 210, 517, 540, 810
BbvI GCAGC 5 cut(s) 348, 568, 571, 733, 781
BccI CCATC 2 cut(s) 373, 395
BceAI ACGGC 2 cut(s) 266, 824
BcgI CGANNNNNNTGC 4 cut(s) 260, 294, 419, 453
BciT130I CCWGG 2 cut(s) 263, 461
BcoDI GTCTC 3 cut(s) 359, 1072, 1086
BfaI CTAG 2 cut(s) 674, 1102
BfmI CTRYAG 2 cut(s) 214, 1030
BfoI RGCGCY 2 cut(s) 154, 259
BfuAI ACCTGC 2 cut(s) 249, 725
BglII AGATCT 1 cut(s) 1026
BisI GCNGC 5 cut(s) 362, 557, 560, 747, 795
BlsI GCNGC 5 cut(s) 363, 558, 561, 748, 796
Bme1390I CCNGG 2 cut(s) 263, 461
Bme18I GGWCC 1 cut(s) 457
BmeRI GACNNNNNGTC 1 cut(s) 463
BmeT110I CYCGRG 1 cut(s) 613
BmgT120I GGNCC 2 cut(s) 457, 815
BmiI GGNNCC 1 cut(s) 384
BmrFI CCNGG 2 cut(s) 263, 461
BmrI ACTGGG 1 cut(s) 711
BmuI ACTGGG 1 cut(s) 711
BpmI CTGGAG 1 cut(s) 145
BpuEI CTTGAG 3 cut(s) 183, 562, 644
Bsa29I ATCGAT 1 cut(s) 900
BsaAI YACGTR 1 cut(s) 859
BsaHI GRCGYC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 1072
BsaJI CCNNGG 5 cut(s) 262, 286, 460, 811, 1062
BsaWI WCCGGW 2 cut(s) 115, 448
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bsc4I CCNNNNNNNGG 2 cut(s) 701, 958
Bse118I RCCGGY 1 cut(s) 448
Bse1I ACTGG 2 cut(s) 706, 977
BseBI CCWGG 2 cut(s) 263, 461
BseCI ATCGAT 1 cut(s) 900
BseDI CCNNGG 5 cut(s) 262, 286, 460, 811, 1062
BseGI GGATG 2 cut(s) 387, 1091
BseLI CCNNNNNNNGG 2 cut(s) 701, 958
BseNI ACTGG 2 cut(s) 706, 977
BseRI GAGGAG 5 cut(s) 20, 23, 128, 218, 1025
BseSI GKGCMC 1 cut(s) 810
BseXI GCAGC 5 cut(s) 348, 568, 571, 733, 781
BseYI CCCAGC 1 cut(s) 480
BsgI GTGCAG 1 cut(s) 42
Bsh1236I CGCG 3 cut(s) 65, 194, 429
BshFI GGCC 1 cut(s) 816
BshTI ACCGGT 1 cut(s) 448
BshVI ATCGAT 1 cut(s) 900
BsiHKAI GWGCWC 4 cut(s) 210, 517, 540, 810
BsiHKCI CYCGRG 1 cut(s) 613
BsiSI CCGG 4 cut(s) 116, 331, 358, 449
BslFI GGGAC 3 cut(s) 8, 718, 1008
BslI CCNNNNNNNGG 2 cut(s) 701, 958
BsmAI GTCTC 3 cut(s) 359, 1072, 1086
BsmBI CGTCTC 2 cut(s) 359, 1086
BsmFI GGGAC 3 cut(s) 8, 718, 1008
BsmI GAATGC 1 cut(s) 644
BsnI GGCC 1 cut(s) 816
Bso31I GGTCTC 1 cut(s) 1072
BsoBI CYCGRG 1 cut(s) 613
Bsp1286I GDGCHC 5 cut(s) 210, 270, 517, 540, 810
Bsp19I CCATGG 1 cut(s) 811
BspACI CCGC 1 cut(s) 888
BspANI GGCC 1 cut(s) 816
BspDI ATCGAT 1 cut(s) 900
BspFNI CGCG 3 cut(s) 65, 194, 429
BspLI GGNNCC 1 cut(s) 384
BspMAI CTGCAG 1 cut(s) 1034
BspMI ACCTGC 2 cut(s) 249, 725
BspPI GGATC 6 cut(s) 12, 94, 581, 839, 943, 983
BspTNI GGTCTC 1 cut(s) 1072
BsrFI RCCGGY 1 cut(s) 448
BsrI ACTGG 2 cut(s) 706, 977
BssAI RCCGGY 1 cut(s) 448
BssECI CCNNGG 5 cut(s) 262, 286, 460, 811, 1062
BssNI GRCGYC 1 cut(s) 225
BssT1I CCWWGG 2 cut(s) 811, 1062
Bst2UI CCWGG 2 cut(s) 263, 461
Bst4CI ACNGT 3 cut(s) 73, 290, 1075
Bst6I CTCTTC 1 cut(s) 41
BstACI GRCGYC 1 cut(s) 225
BstAPI GCANNNNNTGC 1 cut(s) 491
BstBAI YACGTR 1 cut(s) 859
BstDEI CTNAG 1 cut(s) 548
BstDSI CCRYGG 2 cut(s) 286, 811
BstF5I GGATG 2 cut(s) 387, 1091
BstFNI CGCG 3 cut(s) 65, 194, 429
BstH2I RGCGCY 2 cut(s) 154, 259
BstHHI GCGC 4 cut(s) 153, 246, 258, 429
BstMAI GTCTC 3 cut(s) 359, 1072, 1086
BstMWI GCNNNNNNNGC 4 cut(s) 358, 380, 491, 500
BstNI CCWGG 2 cut(s) 263, 461
BstSCI CCNGG 2 cut(s) 261, 459
BstSFI CTRYAG 2 cut(s) 214, 1030
BstSLI GKGCMC 1 cut(s) 810
BstSNI TACGTA 1 cut(s) 859
BstUI CGCG 3 cut(s) 65, 194, 429
BstV1I GCAGC 5 cut(s) 348, 568, 571, 733, 781
BstX2I RGATCY 2 cut(s) 975, 1026
BstYI RGATCY 2 cut(s) 975, 1026
Bsu15I ATCGAT 1 cut(s) 900
BsuRI GGCC 1 cut(s) 816
BsuTUI ATCGAT 1 cut(s) 900
BtgI CCRYGG 2 cut(s) 286, 811
BtsCI GGATG 2 cut(s) 387, 1091
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 3 cut(s) 276, 699, 1071
BveI ACCTGC 2 cut(s) 249, 725
CfoI GCGC 4 cut(s) 153, 246, 258, 429
Cfr10I RCCGGY 1 cut(s) 448
Cfr13I GGNCC 2 cut(s) 457, 815
ClaI ATCGAT 1 cut(s) 900
CseI GACGC 6 cut(s) 54, 95, 214, 341, 380, 1068
Csp6I GTAC 2 cut(s) 113, 652
CspAI ACCGGT 1 cut(s) 448
CspCI CAANNNNNGTGG 2 cut(s) 649, 684
CviAII CATG 7 cut(s) 578, 606, 812, 847, 873, 905, 990
CviQI GTAC 2 cut(s) 113, 652
DdeI CTNAG 1 cut(s) 548
DrdI GACNNNNNNGTC 1 cut(s) 351
DriI GACNNNNNGTC 1 cut(s) 463
DseDI GACNNNNNNGTC 1 cut(s) 351
Eam1104I CTCTTC 1 cut(s) 41
Eam1105I GACNNNNNGTC 1 cut(s) 463
EarI CTCTTC 1 cut(s) 41
Ecl136II GAGCTC 2 cut(s) 515, 538
Eco105I TACGTA 1 cut(s) 859
Eco130I CCWWGG 2 cut(s) 811, 1062
Eco24I GRGCYC 3 cut(s) 270, 517, 540
Eco31I GGTCTC 1 cut(s) 1072
Eco47I GGWCC 1 cut(s) 457
Eco53kI GAGCTC 2 cut(s) 515, 538
Eco57I CTGAAG 1 cut(s) 745
Eco88I CYCGRG 1 cut(s) 613
EcoICRI GAGCTC 2 cut(s) 515, 538
EcoRII CCWGG 2 cut(s) 261, 459
EcoT14I CCWWGG 2 cut(s) 811, 1062
EcoT22I ATGCAT 1 cut(s) 646
EcoT38I GRGCYC 3 cut(s) 270, 517, 540
ErhI CCWWGG 2 cut(s) 811, 1062
Esp3I CGTCTC 2 cut(s) 359, 1086
FaeI CATG 7 cut(s) 581, 609, 815, 850, 876, 908, 993
FaqI GGGAC 3 cut(s) 8, 718, 1008
FatI CATG 7 cut(s) 577, 605, 811, 846, 872, 904, 989
Fnu4HI GCNGC 5 cut(s) 362, 557, 560, 747, 795
FokI GGATG 2 cut(s) 374, 1078
FriOI GRGCYC 3 cut(s) 270, 517, 540
Fsp4HI GCNGC 5 cut(s) 362, 557, 560, 747, 795
FspBI CTAG 2 cut(s) 674, 1102
GlaI GCGC 4 cut(s) 152, 245, 257, 428
GluI GCNGC 5 cut(s) 362, 557, 560, 747, 795
GsaI CCCAGC 1 cut(s) 484
GsuI CTGGAG 1 cut(s) 145
HaeII RGCGCY 2 cut(s) 154, 259
HaeIII GGCC 1 cut(s) 816
HapII CCGG 4 cut(s) 116, 331, 358, 449
HgaI GACGC 6 cut(s) 54, 95, 214, 341, 380, 1068
HhaI GCGC 4 cut(s) 153, 246, 258, 429
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 7 cut(s) 581, 609, 815, 850, 876, 908, 993
Hin6I GCGC 4 cut(s) 151, 244, 256, 427
HinP1I GCGC 4 cut(s) 151, 244, 256, 427
HinfI GANTC 4 cut(s) 196, 544, 611, 1058
HpaII CCGG 4 cut(s) 116, 331, 358, 449
HphI GGTGA 2 cut(s) 286, 463
Hpy166II GTNNAC 6 cut(s) 69, 286, 568, 654, 671, 808
Hpy188I TCNGA 8 cut(s) 99, 182, 307, 322, 344, 370, 948, 953
Hpy188III TCNNGA 5 cut(s) 49, 200, 541, 590, 979
Hpy8I GTNNAC 6 cut(s) 69, 286, 568, 654, 671, 808
Hpy99I CGWCG 3 cut(s) 89, 322, 499
HpyAV CCTTC 4 cut(s) 401, 448, 503, 679
HpyCH4III ACNGT 3 cut(s) 73, 290, 1075
HpyCH4IV ACGT 2 cut(s) 176, 858
HpyF10VI GCNNNNNNNGC 4 cut(s) 358, 380, 491, 500
HpyF3I CTNAG 1 cut(s) 548
HpySE526I ACGT 2 cut(s) 176, 858
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 7 cut(s) 581, 609, 815, 850, 876, 908, 993
HspAI GCGC 4 cut(s) 151, 244, 256, 427
LmnI GCTCC 6 cut(s) 205, 388, 500, 512, 535, 949
Lsp1109I GCAGC 5 cut(s) 348, 568, 571, 733, 781
MaeI CTAG 2 cut(s) 674, 1102
MaeII ACGT 2 cut(s) 176, 858
MaeIII GTNAC 3 cut(s) 73, 292, 442
MboII GAAGA 6 cut(s) 28, 398, 605, 794, 924, 994
MflI RGATCY 2 cut(s) 975, 1026
MhlI GDGCHC 5 cut(s) 210, 270, 517, 540, 810
MluCI AATT 6 cut(s) 334, 596, 722, 789, 799, 1042
MlyI GAGTC 3 cut(s) 190, 553, 605
MmeI TCCRAC 2 cut(s) 127, 300
Mph1103I ATGCAT 1 cut(s) 646
MseI TTAA 2 cut(s) 231, 957
MslI CAYNNNNRTG 2 cut(s) 449, 582
MspI CCGG 4 cut(s) 116, 331, 358, 449
MspR9I CCNGG 2 cut(s) 263, 461
Mva1269I GAATGC 1 cut(s) 644
MvaI CCWGG 2 cut(s) 263, 461
MvnI CGCG 3 cut(s) 65, 194, 429
MwoI GCNNNNNNNGC 4 cut(s) 358, 380, 491, 500
NcoI CCATGG 1 cut(s) 811
NlaIII CATG 7 cut(s) 581, 609, 815, 850, 876, 908, 993
NlaIV GGNNCC 1 cut(s) 384
NmeAIII GCCGAG 2 cut(s) 172, 272
NmuCI GTSAC 2 cut(s) 292, 442
NsiI ATGCAT 1 cut(s) 646
OliI CACNNNNGTG 1 cut(s) 449
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 426
PctI GAATGC 1 cut(s) 644
PfeI GAWTC 1 cut(s) 1058
PinAI ACCGGT 1 cut(s) 448
PkrI GCNGC 5 cut(s) 363, 558, 561, 748, 796
PleI GAGTC 3 cut(s) 190, 552, 605
PpsI GAGTC 3 cut(s) 190, 552, 605
Ppu21I YACGTR 1 cut(s) 859
Psp124BI GAGCTC 2 cut(s) 517, 540
Psp6I CCWGG 2 cut(s) 261, 459
PspFI CCCAGC 1 cut(s) 480
PspGI CCWGG 2 cut(s) 261, 459
PspN4I GGNNCC 1 cut(s) 384
PspPI GGNCC 2 cut(s) 457, 815
PstI CTGCAG 1 cut(s) 1034
PsuI RGATCY 2 cut(s) 975, 1026
RsaI GTAC 2 cut(s) 114, 653
RsaNI GTAC 2 cut(s) 113, 652
RseI CAYNNNNRTG 2 cut(s) 449, 582
SacI GAGCTC 2 cut(s) 517, 540
SaqAI TTAA 2 cut(s) 231, 957
SatI GCNGC 5 cut(s) 362, 557, 560, 747, 795
Sau96I GGNCC 2 cut(s) 457, 815
SchI GAGTC 3 cut(s) 190, 553, 605
ScrFI CCNGG 2 cut(s) 263, 461
SduI GDGCHC 5 cut(s) 210, 270, 517, 540, 810
SfcI CTRYAG 2 cut(s) 214, 1030
SgrAI CRCCGGYG 1 cut(s) 448
SinI GGWCC 1 cut(s) 457
SmiMI CAYNNNNRTG 2 cut(s) 449, 582
SmlI CTYRAG 3 cut(s) 198, 541, 659
SmoI CTYRAG 3 cut(s) 198, 541, 659
SnaBI TACGTA 1 cut(s) 859
Sse9I AATT 6 cut(s) 334, 596, 722, 789, 799, 1042
SsiI CCGC 1 cut(s) 888
SspMI CTAG 2 cut(s) 674, 1102
SstI GAGCTC 2 cut(s) 517, 540
StyD4I CCNGG 2 cut(s) 261, 459
StyI CCWWGG 2 cut(s) 811, 1062
TaaI ACNGT 3 cut(s) 73, 290, 1075
TaiI ACGT 2 cut(s) 179, 861
TaqI TCGA 4 cut(s) 270, 420, 648, 900
TasI AATT 6 cut(s) 334, 596, 722, 789, 799, 1042
TatI WGTACW 1 cut(s) 651
TfiI GAWTC 1 cut(s) 1058
Tru1I TTAA 2 cut(s) 231, 957
Tru9I TTAA 2 cut(s) 231, 957
TscAI CASTG 3 cut(s) 283, 706, 1078
TseFI GTSAC 2 cut(s) 292, 442
TseI GCWGC 5 cut(s) 361, 556, 559, 746, 794
Tsp45I GTSAC 2 cut(s) 292, 442
TspDTI ATGAA 4 cut(s) 594, 650, 835, 861
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 3 cut(s) 283, 706, 1078
VneI GTGCAC 1 cut(s) 806
VpaK11BI GGWCC 1 cut(s) 457
XapI RAATTY 4 cut(s) 334, 596, 722, 799
XcmI CCANNNNNNNNNTGG 1 cut(s) 467
XspI CTAG 2 cut(s) 674, 1102
Zsp2I ATGCAT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.