RH6DG424000

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0017078
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG424000.1

Sequence Viewer

Length: 1143 bp
ATGTGTACATTAGAAGTAATTAATCCTCATTTCCTTAACTCACTCGCTCCACCAATGGATCATCTCGCTCTCCTCTCTCTTTTTCTCTTCCTATCCTCCGCTGCCGCGTCCGCCGTAAGCGACGGTGGCGATCCTTTCATCCGACAAGTCGTGCCGGAGGCGGAGGAGGATCCACTCCTCCACGCGGAGCATCACTTCTCAAACTTCAAAGCCACCTTCGGAAAGACCTACGCGAGCCAGGAGGAGCACGACTACAGGTTCGGCGTCTTCAAGGCCAACCTCCGCCGAGCCAAAATACACCAGGGGCTGGACCCCACCGCCGTCCACGGTGTCACCAAGTTCTCCGATCTCACTCCCAAGGAGTTTCGCCGGAATTTTCTCGGGCTCAAGAAGGGTCTCCGGCTACCGGAGGACGCCCACACGGCTCCGATCCTTCCGACCAATGATCTTCCCACCGACTTCGACTGGCGCGAGAAGGGTGCCGTCACGCCGGTCAAGGACCAGGGTTCGTGTGGATCATGCTGGTCGTTTAGTGCGGCCGGAGCACTGGAAGGAGCTCATTATTTGGCAACAGGGGAGCTCGTGAGTCTCAGCAGTCAGCAGCTTGTGGACTGTGATCATGAGTGTGATCCAGAAGAATATGGTTCATGTGACTCAGGCTGTAGTGGTGGACTGATGACCAATGCCTTTGAGTACGCACTCAAGGCTGGGGGTTTGGAGCAAGAGAAGGACTACCCTTACACTGGGACTGATCGCGGTACCTGCAAATTTGACAAGAGCAAAGTTGTTGCTACTGTCTCCAACTTCAGTGTTGTTTCCCTTGACGAAGATCAAATTGCTGCAAATTTGGTCCACAATGGCCCTCTTGCAATTGGCATCAATGCGGTGTTCATGCAAACATACGTGGGGGGAGTCTCGTGCCCTTACATCTGCGCAAAACATCGTCTGGATCACGGGGTGCTTCTGGTGGGTTACGGCTCCTCTGGGTTTGCTCCGATACGCTTCAAGGAGAAGCCTTACTGGATCATAAAGAATTCATGGGGACAGAGTTGGGGAGAGGAAGGGTATTACAAGATCTGCAGGGGTCATAATGTTTGTGGGGTGGATAGCATGGTCTCTACCGTTGCTGCTATGCACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04210 map04142 map04210
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

380

Amino Acids

41.43

Weight (kDa)

5.63

Isoelectric Point (pI)

33.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 66 - 122 9.7e-15 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 150 - 374 1.7e-75 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16190
fragaria_vesca FvH4_2g38940
malus_domestica MD08G1021600.v1.1 MD15G1019300.v1.1
prunus_persica Prupe.1G371600_v2.0.a1
pyrus_communis pycom08g01710
rosa_chinensis RchiOBHm_Chr6g0302031
rosa_laevigata RLG00000011201
rosa_roxburghii Rroxscaffold_7G00166170
rosa_rugosa Rorug06G0311100
rosa_samantha Rh6BG478400 Rh6DG424000
rosa_wichuraiana Rw6G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 934
Acc36I ACCTGC 1 cut(s) 770
Acc65I GGTACC 1 cut(s) 758
AccB1I GGYRCC 2 cut(s) 479, 758
AccB7I CCANNNNNTGG 1 cut(s) 307
AccII CGCG 5 cut(s) 107, 185, 233, 471, 756
AclWI GGATC 9 cut(s) 66, 125, 164, 177, 424, 523, 623, 957, 1031
AcoI YGGCCR 1 cut(s) 537
AcsI RAATTY 4 cut(s) 373, 767, 844, 1033
AcuI CTGAAG 1 cut(s) 790
AcyI GRCGYC 2 cut(s) 264, 414
AdeI CACNNNGTG 1 cut(s) 958
AfaI GTAC 3 cut(s) 7, 695, 760
AfiI CCNNNNNNNGG 4 cut(s) 184, 307, 406, 743
AgsI TTSAA 3 cut(s) 208, 271, 1006
AjnI CCWGG 3 cut(s) 237, 300, 501
AluBI AGCT 3 cut(s) 557, 580, 604
AluI AGCT 3 cut(s) 557, 580, 604
Alw21I GWGCWC 4 cut(s) 249, 547, 559, 582
Alw26I GTCTC 5 cut(s) 401, 593, 802, 919, 1120
AlwI GGATC 9 cut(s) 66, 125, 164, 177, 424, 523, 623, 957, 1031
AlwNI CAGNNNCTG 1 cut(s) 307
Ama87I CYCGRG 1 cut(s) 380
AoxI GGCC 3 cut(s) 273, 537, 859
ApeKI GCWGC 4 cut(s) 101, 601, 839, 1127
ApoI RAATTY 4 cut(s) 373, 767, 844, 1033
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AseI ATTAAT 1 cut(s) 21
Asp718I GGTACC 1 cut(s) 758
AspLEI GCGC 2 cut(s) 471, 935
AspS9I GGNCC 4 cut(s) 310, 499, 850, 860
AsuHPI GGTGA 1 cut(s) 325
AvaI CYCGRG 1 cut(s) 380
AvaII GGWCC 3 cut(s) 310, 499, 850
BaeGI GKGCMC 1 cut(s) 923
BamHI GGATCC 1 cut(s) 169
BanI GGYRCC 2 cut(s) 479, 758
BanII GRGCYC 3 cut(s) 387, 559, 582
BauI CACGAG 2 cut(s) 581, 916
BbsI GAAGAC 1 cut(s) 259
Bbv12I GWGCWC 4 cut(s) 249, 547, 559, 582
BbvI GCAGC 4 cut(s) 88, 613, 826, 1114
BceAI ACGGC 5 cut(s) 98, 305, 438, 467, 991
BcgI CGANNNNNNTGC 2 cut(s) 461, 495
BciT130I CCWGG 3 cut(s) 239, 302, 503
BclI TGATCA 1 cut(s) 616
BcoDI GTCTC 5 cut(s) 401, 593, 802, 919, 1120
BfmI CTRYAG 3 cut(s) 253, 661, 1078
BfuAI ACCTGC 1 cut(s) 770
BglI GCCNNNNNGGC 1 cut(s) 422
BglII AGATCT 1 cut(s) 1074
BisI GCNGC 6 cut(s) 102, 105, 537, 602, 840, 1128
BlsI GCNGC 6 cut(s) 103, 106, 538, 603, 841, 1129
Bme1390I CCNGG 3 cut(s) 239, 302, 503
Bme18I GGWCC 3 cut(s) 310, 499, 850
BmeT110I CYCGRG 1 cut(s) 380
BmgT120I GGNCC 4 cut(s) 310, 499, 850, 860
BmiI GGNNCC 6 cut(s) 171, 312, 426, 481, 760, 979
BmrFI CCNGG 3 cut(s) 239, 302, 503
BmrI ACTGGG 1 cut(s) 753
BmsI GCATC 2 cut(s) 199, 885
BmuI ACTGGG 1 cut(s) 753
BpiI GAAGAC 1 cut(s) 259
BpuEI CTTGAG 2 cut(s) 371, 686
BsaAI YACGTR 1 cut(s) 904
BsaHI GRCGYC 2 cut(s) 264, 414
BsaI GGTCTC 2 cut(s) 401, 1120
BsaJI CCNNGG 4 cut(s) 301, 325, 357, 502
BsaWI WCCGGW 1 cut(s) 406
Bsc4I CCNNNNNNNGG 4 cut(s) 184, 307, 406, 743
Bse118I RCCGGY 1 cut(s) 490
Bse1I ACTGG 4 cut(s) 470, 552, 748, 1025
BseBI CCWGG 3 cut(s) 239, 302, 503
BseDI CCNNGG 4 cut(s) 301, 325, 357, 502
BseGI GGATG 1 cut(s) 138
BseLI CCNNNNNNNGG 4 cut(s) 184, 307, 406, 743
BseMII CTCAG 2 cut(s) 604, 669
BseNI ACTGG 4 cut(s) 470, 552, 748, 1025
BseRI GAGGAG 5 cut(s) 62, 167, 179, 257, 970
BseSI GKGCMC 1 cut(s) 923
BseX3I CGGCCG 1 cut(s) 537
BseXI GCAGC 4 cut(s) 88, 613, 826, 1114
BseYI CCCAGC 1 cut(s) 707
Bsh1236I CGCG 5 cut(s) 107, 185, 233, 471, 756
Bsh1285I CGRYCG 1 cut(s) 540
BshFI GGCC 3 cut(s) 275, 539, 861
BshNI GGYRCC 2 cut(s) 479, 758
BsiEI CGRYCG 1 cut(s) 540
BsiHKAI GWGCWC 4 cut(s) 249, 547, 559, 582
BsiHKCI CYCGRG 1 cut(s) 380
BsiSI CCGG 6 cut(s) 155, 370, 400, 407, 491, 540
BslFI GGGAC 2 cut(s) 760, 1056
BslI CCNNNNNNNGG 4 cut(s) 184, 307, 406, 743
BsmAI GTCTC 5 cut(s) 401, 593, 802, 919, 1120
BsmFI GGGAC 2 cut(s) 760, 1056
BsnI GGCC 3 cut(s) 275, 539, 861
Bso31I GGTCTC 2 cut(s) 401, 1120
BsoBI CYCGRG 1 cut(s) 380
Bsp1286I GDGCHC 6 cut(s) 249, 387, 547, 559, 582, 923
Bsp1407I TGTACA 1 cut(s) 5
BspANI GGCC 3 cut(s) 275, 539, 861
BspCNI CTCAG 2 cut(s) 603, 668
BspFNI CGCG 5 cut(s) 107, 185, 233, 471, 756
BspHI TCATGA 1 cut(s) 619
BspLI GGNNCC 6 cut(s) 171, 312, 426, 481, 760, 979
BspMAI CTGCAG 1 cut(s) 1082
BspMI ACCTGC 1 cut(s) 770
BspPI GGATC 9 cut(s) 66, 125, 164, 177, 424, 523, 623, 957, 1031
BspT107I GGYRCC 2 cut(s) 479, 758
BspTNI GGTCTC 2 cut(s) 401, 1120
BsrFI RCCGGY 1 cut(s) 490
BsrGI TGTACA 1 cut(s) 5
BsrI ACTGG 4 cut(s) 470, 552, 748, 1025
BssAI RCCGGY 1 cut(s) 490
BssECI CCNNGG 4 cut(s) 301, 325, 357, 502
BssNI GRCGYC 2 cut(s) 264, 414
BssSI CACGAG 2 cut(s) 581, 916
BssT1I CCWWGG 1 cut(s) 357
Bst2BI CACGAG 2 cut(s) 581, 916
Bst2UI CCWGG 3 cut(s) 239, 302, 503
Bst4CI ACNGT 5 cut(s) 125, 329, 614, 796, 1123
Bst6I CTCTTC 1 cut(s) 92
BstACI GRCGYC 2 cut(s) 264, 414
BstAUI TGTACA 1 cut(s) 5
BstBAI YACGTR 1 cut(s) 904
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 2 cut(s) 590, 655
BstDSI CCRYGG 1 cut(s) 325
BstF5I GGATG 1 cut(s) 138
BstFNI CGCG 5 cut(s) 107, 185, 233, 471, 756
BstHHI GCGC 2 cut(s) 471, 935
BstMAI GTCTC 5 cut(s) 401, 593, 802, 919, 1120
BstMCI CGRYCG 1 cut(s) 540
BstMWI GCNNNNNNNGC 6 cut(s) 110, 126, 422, 542, 704, 762
BstNI CCWGG 3 cut(s) 239, 302, 503
BstSCI CCNGG 3 cut(s) 237, 300, 501
BstSFI CTRYAG 3 cut(s) 253, 661, 1078
BstSLI GKGCMC 1 cut(s) 923
BstUI CGCG 5 cut(s) 107, 185, 233, 471, 756
BstV1I GCAGC 4 cut(s) 88, 613, 826, 1114
BstV2I GAAGAC 1 cut(s) 259
BstX2I RGATCY 2 cut(s) 169, 1074
BstYI RGATCY 2 cut(s) 169, 1074
BstZI CGGCCG 1 cut(s) 537
BsuRI GGCC 3 cut(s) 275, 539, 861
BtgI CCRYGG 1 cut(s) 325
BtsCI GGATG 1 cut(s) 138
BtsIMutI CAGTG 3 cut(s) 545, 741, 814
BveI ACCTGC 1 cut(s) 770
Cac8I GCNNGC 1 cut(s) 235
CaiI CAGNNNCTG 1 cut(s) 307
CciI TCATGA 1 cut(s) 619
CfoI GCGC 2 cut(s) 471, 935
Cfr10I RCCGGY 1 cut(s) 490
Cfr13I GGNCC 4 cut(s) 310, 499, 850, 860
CseI GACGC 3 cut(s) 96, 253, 422
Csp6I GTAC 3 cut(s) 6, 694, 759
CviAII CATG 7 cut(s) 519, 620, 648, 892, 1038, 1111, 1140
CviQI GTAC 3 cut(s) 6, 694, 759
DdeI CTNAG 2 cut(s) 590, 655
DraIII CACNNNGTG 1 cut(s) 958
EaeI YGGCCR 1 cut(s) 537
EagI CGGCCG 1 cut(s) 537
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
EciI GGCGGA 3 cut(s) 100, 176, 272
Ecl136II GAGCTC 2 cut(s) 557, 580
EclXI CGGCCG 1 cut(s) 537
Eco130I CCWWGG 1 cut(s) 357
Eco24I GRGCYC 3 cut(s) 387, 559, 582
Eco31I GGTCTC 2 cut(s) 401, 1120
Eco47I GGWCC 3 cut(s) 310, 499, 850
Eco52I CGGCCG 1 cut(s) 537
Eco53kI GAGCTC 2 cut(s) 557, 580
Eco57I CTGAAG 1 cut(s) 790
Eco88I CYCGRG 1 cut(s) 380
EcoICRI GAGCTC 2 cut(s) 557, 580
EcoRI GAATTC 1 cut(s) 1033
EcoRII CCWGG 3 cut(s) 237, 300, 501
EcoT14I CCWWGG 1 cut(s) 357
EcoT38I GRGCYC 3 cut(s) 387, 559, 582
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 7 cut(s) 522, 623, 651, 895, 1041, 1114, 1143
FaqI GGGAC 2 cut(s) 760, 1056
FatI CATG 7 cut(s) 518, 619, 647, 891, 1037, 1110, 1139
FbaI TGATCA 1 cut(s) 616
Fnu4HI GCNGC 6 cut(s) 102, 105, 537, 602, 840, 1128
FokI GGATG 1 cut(s) 125
FriOI GRGCYC 3 cut(s) 387, 559, 582
Fsp4HI GCNGC 6 cut(s) 102, 105, 537, 602, 840, 1128
FspI TGCGCA 1 cut(s) 934
GlaI GCGC 2 cut(s) 470, 934
GluI GCNGC 6 cut(s) 102, 105, 537, 602, 840, 1128
GsaI CCCAGC 1 cut(s) 711
HaeIII GGCC 3 cut(s) 275, 539, 861
HapII CCGG 6 cut(s) 155, 370, 400, 407, 491, 540
HgaI GACGC 3 cut(s) 96, 253, 422
HhaI GCGC 2 cut(s) 471, 935
Hin1I GRCGYC 2 cut(s) 264, 414
Hin1II CATG 7 cut(s) 522, 623, 651, 895, 1041, 1114, 1143
Hin6I GCGC 2 cut(s) 469, 933
HinP1I GCGC 2 cut(s) 469, 933
HinfI GANTC 3 cut(s) 586, 653, 912
HpaII CCGG 6 cut(s) 155, 370, 400, 407, 491, 540
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 5 cut(s) 6, 325, 610, 671, 853
Hpy188I TCNGA 6 cut(s) 143, 221, 346, 429, 438, 996
Hpy188III TCNNGA 5 cut(s) 388, 583, 620, 632, 947
Hpy8I GTNNAC 5 cut(s) 6, 325, 610, 671, 853
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 7 cut(s) 226, 385, 443, 469, 545, 721, 1055
HpyCH4III ACNGT 5 cut(s) 125, 329, 614, 796, 1123
HpyCH4IV ACGT 1 cut(s) 903
HpyCH4V TGCA 6 cut(s) 765, 842, 869, 895, 1080, 1135
HpyF10VI GCNNNNNNNGC 6 cut(s) 110, 126, 422, 542, 704, 762
HpyF3I CTNAG 2 cut(s) 590, 655
HpySE526I ACGT 1 cut(s) 903
Hsp92I GRCGYC 2 cut(s) 264, 414
Hsp92II CATG 7 cut(s) 522, 623, 651, 895, 1041, 1114, 1143
HspAI GCGC 2 cut(s) 469, 933
KpnI GGTACC 1 cut(s) 762
Ksp22I TGATCA 1 cut(s) 616
Lsp1109I GCAGC 4 cut(s) 88, 613, 826, 1114
LweI GCATC 2 cut(s) 199, 885
MaeII ACGT 1 cut(s) 903
MaeIII GTNAC 4 cut(s) 331, 484, 650, 971
MboII GAAGA 5 cut(s) 79, 259, 440, 647, 839
MfeI CAATTG 1 cut(s) 870
MflI RGATCY 2 cut(s) 169, 1074
MhlI GDGCHC 6 cut(s) 249, 387, 547, 559, 582, 923
MluCI AATT 7 cut(s) 18, 373, 767, 834, 844, 870, 1033
MlyI GAGTC 3 cut(s) 595, 647, 921
MmeI TCCRAC 3 cut(s) 166, 461, 825
MseI TTAA 2 cut(s) 21, 36
MslI CAYNNNNRTG 1 cut(s) 624
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 6 cut(s) 155, 370, 400, 407, 491, 540
MspR9I CCNGG 3 cut(s) 239, 302, 503
MunI CAATTG 1 cut(s) 870
MvaI CCWGG 3 cut(s) 239, 302, 503
MvnI CGCG 5 cut(s) 107, 185, 233, 471, 756
MwoI GCNNNNNNNGC 6 cut(s) 110, 126, 422, 542, 704, 762
NlaIII CATG 7 cut(s) 522, 623, 651, 895, 1041, 1114, 1143
NlaIV GGNNCC 6 cut(s) 171, 312, 426, 481, 760, 979
NmeAIII GCCGAG 1 cut(s) 311
NmuCI GTSAC 3 cut(s) 331, 484, 650
NsbI TGCGCA 1 cut(s) 934
PagI TCATGA 1 cut(s) 619
PcsI WCGNNNNNNNCGW 1 cut(s) 468
PflMI CCANNNNNTGG 1 cut(s) 307
PkrI GCNGC 6 cut(s) 103, 106, 538, 603, 841, 1129
PleI GAGTC 3 cut(s) 594, 647, 920
PpsI GAGTC 3 cut(s) 594, 647, 920
Ppu21I YACGTR 1 cut(s) 904
PshBI ATTAAT 1 cut(s) 21
Psp124BI GAGCTC 2 cut(s) 559, 582
Psp6I CCWGG 3 cut(s) 237, 300, 501
PspFI CCCAGC 1 cut(s) 707
PspGI CCWGG 3 cut(s) 237, 300, 501
PspN4I GGNNCC 6 cut(s) 171, 312, 426, 481, 760, 979
PspPI GGNCC 4 cut(s) 310, 499, 850, 860
PstI CTGCAG 1 cut(s) 1082
PstNI CAGNNNCTG 1 cut(s) 307
PsuI RGATCY 2 cut(s) 169, 1074
RsaI GTAC 3 cut(s) 7, 695, 760
RsaNI GTAC 3 cut(s) 6, 694, 759
RseI CAYNNNNRTG 1 cut(s) 624
SacI GAGCTC 2 cut(s) 559, 582
SaqAI TTAA 2 cut(s) 21, 36
SatI GCNGC 6 cut(s) 102, 105, 537, 602, 840, 1128
Sau96I GGNCC 4 cut(s) 310, 499, 850, 860
SchI GAGTC 3 cut(s) 595, 647, 921
ScrFI CCNGG 3 cut(s) 239, 302, 503
SduI GDGCHC 6 cut(s) 249, 387, 547, 559, 582, 923
SetI ASST 9 cut(s) 218, 230, 260, 282, 559, 582, 606, 764, 906
SfaNI GCATC 2 cut(s) 199, 885
SfcI CTRYAG 3 cut(s) 253, 661, 1078
SinI GGWCC 3 cut(s) 310, 499, 850
SmiMI CAYNNNNRTG 1 cut(s) 624
SmlI CTYRAG 2 cut(s) 386, 701
SmoI CTYRAG 2 cut(s) 386, 701
Sse9I AATT 7 cut(s) 18, 373, 767, 834, 844, 870, 1033
SstI GAGCTC 2 cut(s) 559, 582
StyD4I CCNGG 3 cut(s) 237, 300, 501
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 5 cut(s) 125, 329, 614, 796, 1123
TaiI ACGT 1 cut(s) 906
TaqI TCGA 1 cut(s) 462
TasI AATT 7 cut(s) 18, 373, 767, 834, 844, 870, 1033
TatI WGTACW 1 cut(s) 5
TauI GCSGC 2 cut(s) 107, 539
Tru1I TTAA 2 cut(s) 21, 36
Tru9I TTAA 2 cut(s) 21, 36
TscAI CASTG 3 cut(s) 552, 748, 814
TseFI GTSAC 3 cut(s) 331, 484, 650
TseI GCWGC 4 cut(s) 101, 601, 839, 1127
Tsp45I GTSAC 3 cut(s) 331, 484, 650
TspDTI ATGAA 4 cut(s) 127, 636, 880, 1026
TspRI CASTG 3 cut(s) 552, 748, 814
Van91I CCANNNNNTGG 1 cut(s) 307
VpaK11BI GGWCC 3 cut(s) 310, 499, 850
VspI ATTAAT 1 cut(s) 21
XapI RAATTY 4 cut(s) 373, 767, 844, 1033
XcmI CCANNNNNNNNNTGG 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.