Rorug06G0311100

Transcription initiation factor IIF subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
46243828 .. 46248748
4921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0311100.1

Sequence Viewer

Length: 1089 bp
ATGGCCTCTCAATCTTCACCTTCATCTCCTTCTTCTTCTTCTTCTTCATCTTCATCTTCCTTATCATCATCATCATCATCATCATCTCCGCCTCTAATCCCAGGCCTCCCAAACGACGTCGCTTCCTTAATCCTCTCCCTCATCCCCTTCTCCCACCACGCCCGCCTCAAACCCACCTGCAAATCATGGCGCCTCTTCCTCTCCTCCAAAGCCCTCTTCTCTTCCCGCCAAACCCACCGCAGCCTCTCCCACCTCATCTGCATCTTCCCCGAGGACCCCGCCGTCACCGGACCTTACCTCTTCGACCCCCGCCACCTCGCCTGGTGCCCCCTCCCCCCCATGCCCTGTAACCCCTACGTCTACGGCCTCTGCAACTTCACCTCCGTCGCGATCGGGCCCCACCTCTACGTCCTCGGCGGCTCTCTCTTCGACGCCCGCTCCTTCCCGATCGACCGTCCCACGCCGTCGTCGGCGGTGTTCCGGTTTGACTTCACCACCGCCGCCTGGGAGTACCGCGCTCCGATGCTCACCCCGCGCGGGAGCTTCGCGTGCGCCAAGGTTCCGGATTCCGACCAGATCATCGTCGCCGGAGGCGGTTCCCGCCACACCATGTTCAGCGCCGCCGGGAGCAGGATGAGCTCGGTGGAGAGGTATGATGTATGTAGAGACGAGTGGGTGGCCATGGAAGGGCTGCCGAGCTTTCGGGCCGGGTGTGTGGGGTTCTTTGCCGGAGATGAGGAGGAGAGGGAGTTTTGGGTGATGGGCGGGTACGGCCAGGCCAGGACTATATCGGAGGTGGTGCCGGTGGACGAGTATTACCGGAATGCGGTGGTGATGGAATTGACGAGTAGGAATGGCGGGGGCAGGTGGAGGGAGACTGGTGATATGTGGGAAGGAGGGGAGAGAATGAGGCTTGGGAAAATTGTGGTGGTTGATAATGAGGTTGATCCTGCACAACCTGGTGTGTTCATGCTTGATGGGAATGATATATTCAGATATGACCTGGCATCAAATCGCTGGAGTTTGGAGTCACATATTGCAACTCATCATTTGCGTTCGTTGTATTGGAGGGAGAGTTGTATGTTATAA

Protein Analysis

362

Amino Acids

39.96

Weight (kDa)

6.21

Isoelectric Point (pI)

56.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_1 PF01344 124 - 175 8e-06 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1087
AarI CACCTGC 2 cut(s) 185, 855
AasI GACNNNNNNGTC 1 cut(s) 281
AatII GACGTC 1 cut(s) 120
Acc36I ACCTGC 2 cut(s) 185, 855
AccB1I GGYRCC 3 cut(s) 189, 324, 799
AccBSI CCGCTC 1 cut(s) 438
AccI GTMKAC 1 cut(s) 360
AccII CGCG 5 cut(s) 389, 516, 535, 537, 548
AccIII TCCGGA 1 cut(s) 562
AclWI GGATC 1 cut(s) 941
AcoI YGGCCR 2 cut(s) 678, 772
AcyI GRCGYC 3 cut(s) 117, 190, 432
AfaI GTAC 2 cut(s) 512, 770
AfiI CCNNNNNNNGG 5 cut(s) 504, 537, 630, 687, 826
AjnI CCWGG 7 cut(s) 100, 320, 503, 774, 779, 958, 1002
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 3 cut(s) 543, 639, 699
AluI AGCT 3 cut(s) 543, 639, 699
Alw21I GWGCWC 1 cut(s) 641
Alw26I GTCTC 2 cut(s) 660, 869
AlwI GGATC 1 cut(s) 941
Ama87I CYCGRG 1 cut(s) 269
Aor13HI TCCGGA 1 cut(s) 562
AoxI GGCC 8 cut(s) 3, 103, 364, 395, 678, 705, 772, 777
ApaI GGGCCC 1 cut(s) 399
ApeKI GCWGC 2 cut(s) 240, 691
AspLEI GCGC 5 cut(s) 192, 518, 537, 554, 620
AspS9I GGNCC 5 cut(s) 274, 290, 395, 396, 705
AsuC2I CCSGG 2 cut(s) 625, 709
AsuHPI GGTGA 8 cut(s) 9, 277, 370, 484, 520, 769, 844, 893
AvaI CYCGRG 1 cut(s) 269
AvaII GGWCC 2 cut(s) 274, 290
BaeGI GKGCMC 2 cut(s) 329, 399
BalI TGGCCA 1 cut(s) 680
BanI GGYRCC 3 cut(s) 189, 324, 799
BanII GRGCYC 2 cut(s) 399, 641
Bbv12I GWGCWC 1 cut(s) 641
BbvI GCAGC 2 cut(s) 252, 678
BccI CCATC 3 cut(s) 754, 829, 971
BceAI ACGGC 4 cut(s) 266, 379, 448, 787
BciT130I CCWGG 7 cut(s) 102, 322, 505, 776, 781, 960, 1004
BcnI CCSGG 2 cut(s) 625, 709
BcoDI GTCTC 2 cut(s) 660, 869
BfoI RGCGCY 2 cut(s) 193, 621
BfuAI ACCTGC 2 cut(s) 185, 855
BisI GCNGC 5 cut(s) 241, 418, 501, 621, 692
BlsI GCNGC 5 cut(s) 242, 419, 502, 622, 693
Bme1390I CCNGG 9 cut(s) 102, 322, 505, 625, 709, 776, 781, 960, 1004
Bme18I GGWCC 2 cut(s) 274, 290
BmeT110I CYCGRG 1 cut(s) 269
BmgT120I GGNCC 5 cut(s) 274, 290, 395, 396, 705
BmiI GGNNCC 8 cut(s) 191, 276, 326, 397, 398, 561, 598, 801
BmrFI CCNGG 9 cut(s) 102, 322, 505, 625, 709, 776, 781, 960, 1004
BmsI GCATC 3 cut(s) 270, 513, 1016
BpmI CTGGAG 1 cut(s) 1039
BpuMI CCSGG 2 cut(s) 625, 709
BsaHI GRCGYC 3 cut(s) 117, 190, 432
BsaJI CCNNGG 6 cut(s) 100, 270, 412, 504, 555, 681
BsaWI WCCGGW 4 cut(s) 287, 480, 562, 819
BsaXI ACNNNNNCTCC 7 cut(s) 365, 395, 422, 452, 734, 764, 1060
Bsc4I CCNNNNNNNGG 5 cut(s) 504, 537, 630, 687, 826
Bse118I RCCGGY 1 cut(s) 802
Bse1I ACTGG 1 cut(s) 883
BseAI TCCGGA 1 cut(s) 562
BseBI CCWGG 7 cut(s) 102, 322, 505, 776, 781, 960, 1004
BseDI CCNNGG 6 cut(s) 100, 270, 412, 504, 555, 681
BseGI GGATG 2 cut(s) 141, 639
BseLI CCNNNNNNNGG 5 cut(s) 504, 537, 630, 687, 826
BseNI ACTGG 1 cut(s) 883
BseRI GAGGAG 3 cut(s) 193, 752, 755
BseSI GKGCMC 2 cut(s) 329, 399
BseXI GCAGC 2 cut(s) 252, 678
BsgI GTGCAG 1 cut(s) 936
Bsh1236I CGCG 5 cut(s) 389, 516, 535, 537, 548
Bsh1285I CGRYCG 3 cut(s) 393, 450, 454
BshFI GGCC 8 cut(s) 5, 105, 366, 397, 680, 707, 774, 779
BshNI GGYRCC 3 cut(s) 189, 324, 799
BsiEI CGRYCG 3 cut(s) 393, 450, 454
BsiHKAI GWGCWC 1 cut(s) 641
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 9 cut(s) 288, 481, 563, 588, 624, 708, 729, 803, 820
BslFI GGGAC 1 cut(s) 441
BslI CCNNNNNNNGG 5 cut(s) 504, 537, 630, 687, 826
BsmAI GTCTC 2 cut(s) 660, 869
BsmBI CGTCTC 1 cut(s) 660
BsmFI GGGAC 1 cut(s) 441
BsmI GAATGC 1 cut(s) 829
BsnI GGCC 8 cut(s) 5, 105, 366, 397, 680, 707, 774, 779
BsoBI CYCGRG 1 cut(s) 269
Bsp120I GGGCCC 1 cut(s) 395
Bsp1286I GDGCHC 3 cut(s) 329, 399, 641
Bsp13I TCCGGA 1 cut(s) 562
Bsp143I GATC 4 cut(s) 390, 447, 576, 946
Bsp19I CCATGG 1 cut(s) 681
Bsp68I TCGCGA 1 cut(s) 389
BspANI GGCC 8 cut(s) 5, 105, 366, 397, 680, 707, 774, 779
BspEI TCCGGA 1 cut(s) 562
BspFNI CGCG 5 cut(s) 389, 516, 535, 537, 548
BspLI GGNNCC 8 cut(s) 191, 276, 326, 397, 398, 561, 598, 801
BspMI ACCTGC 2 cut(s) 185, 855
BspPI GGATC 1 cut(s) 941
BspT107I GGYRCC 3 cut(s) 189, 324, 799
BsrBI CCGCTC 1 cut(s) 438
BsrFI RCCGGY 1 cut(s) 802
BsrI ACTGG 1 cut(s) 883
BssAI RCCGGY 1 cut(s) 802
BssECI CCNNGG 6 cut(s) 100, 270, 412, 504, 555, 681
BssMI GATC 4 cut(s) 390, 447, 576, 946
BssNI GRCGYC 3 cut(s) 117, 190, 432
BssT1I CCWWGG 2 cut(s) 555, 681
Bst2UI CCWGG 7 cut(s) 102, 322, 505, 776, 781, 960, 1004
Bst4CI ACNGT 1 cut(s) 455
Bst6I CTCTTC 5 cut(s) 200, 221, 226, 305, 431
BstACI GRCGYC 3 cut(s) 117, 190, 432
BstC8I GCNNGC 3 cut(s) 163, 436, 550
BstDSI CCRYGG 1 cut(s) 681
BstF5I GGATG 2 cut(s) 141, 639
BstFNI CGCG 5 cut(s) 389, 516, 535, 537, 548
BstH2I RGCGCY 2 cut(s) 193, 621
BstHHI GCGC 5 cut(s) 192, 518, 537, 554, 620
BstKTI GATC 4 cut(s) 393, 450, 579, 949
BstMAI GTCTC 2 cut(s) 660, 869
BstMBI GATC 4 cut(s) 390, 447, 576, 946
BstMCI CGRYCG 3 cut(s) 393, 450, 454
BstMWI GCNNNNNNNGC 5 cut(s) 532, 549, 600, 636, 771
BstNI CCWGG 7 cut(s) 102, 322, 505, 776, 781, 960, 1004
BstSCI CCNGG 9 cut(s) 100, 320, 503, 623, 707, 774, 779, 958, 1002
BstSLI GKGCMC 2 cut(s) 329, 399
BstUI CGCG 5 cut(s) 389, 516, 535, 537, 548
BstV1I GCAGC 2 cut(s) 252, 678
BsuRI GGCC 8 cut(s) 5, 105, 366, 397, 680, 707, 774, 779
BtgI CCRYGG 1 cut(s) 681
BtsCI GGATG 2 cut(s) 141, 639
BtuMI TCGCGA 1 cut(s) 389
BveI ACCTGC 2 cut(s) 185, 855
Cac8I GCNNGC 3 cut(s) 163, 436, 550
CfoI GCGC 5 cut(s) 192, 518, 537, 554, 620
Cfr10I RCCGGY 1 cut(s) 802
Cfr13I GGNCC 5 cut(s) 274, 290, 395, 396, 705
CseI GACGC 1 cut(s) 440
CsiI ACCWGGT 1 cut(s) 958
Csp6I GTAC 2 cut(s) 511, 769
CviAII CATG 5 cut(s) 186, 340, 610, 682, 970
CviQI GTAC 2 cut(s) 511, 769
DinI GGCGCC 1 cut(s) 191
DpnI GATC 4 cut(s) 392, 449, 578, 948
DpnII GATC 4 cut(s) 390, 447, 576, 946
DrdI GACNNNNNNGTC 1 cut(s) 281
DseDI GACNNNNNNGTC 1 cut(s) 281
EaeI YGGCCR 2 cut(s) 678, 772
Eam1104I CTCTTC 5 cut(s) 200, 221, 226, 305, 431
EarI CTCTTC 5 cut(s) 200, 221, 226, 305, 431
EciI GGCGGA 1 cut(s) 78
Ecl136II GAGCTC 1 cut(s) 639
Eco130I CCWWGG 2 cut(s) 555, 681
Eco147I AGGCCT 1 cut(s) 105
Eco24I GRGCYC 2 cut(s) 399, 641
Eco47I GGWCC 2 cut(s) 274, 290
Eco53kI GAGCTC 1 cut(s) 639
Eco88I CYCGRG 1 cut(s) 269
EcoICRI GAGCTC 1 cut(s) 639
EcoO109I RGGNCCY 2 cut(s) 274, 396
EcoRII CCWGG 7 cut(s) 100, 320, 503, 774, 779, 958, 1002
EcoT14I CCWWGG 2 cut(s) 555, 681
EcoT38I GRGCYC 2 cut(s) 399, 641
EgeI GGCGCC 1 cut(s) 191
EheI GGCGCC 1 cut(s) 191
ErhI CCWWGG 2 cut(s) 555, 681
Esp3I CGTCTC 1 cut(s) 660
FaeI CATG 5 cut(s) 189, 343, 613, 685, 973
FaqI GGGAC 1 cut(s) 441
FatI CATG 5 cut(s) 185, 339, 609, 681, 969
FblI GTMKAC 1 cut(s) 360
Fnu4HI GCNGC 5 cut(s) 241, 418, 501, 621, 692
FokI GGATG 2 cut(s) 128, 646
FriOI GRGCYC 2 cut(s) 399, 641
Fsp4HI GCNGC 5 cut(s) 241, 418, 501, 621, 692
GlaI GCGC 5 cut(s) 191, 517, 536, 553, 619
GluI GCNGC 5 cut(s) 241, 418, 501, 621, 692
GsuI CTGGAG 1 cut(s) 1039
HaeII RGCGCY 2 cut(s) 193, 621
HaeIII GGCC 8 cut(s) 5, 105, 366, 397, 680, 707, 774, 779
HapII CCGG 9 cut(s) 288, 481, 563, 588, 624, 708, 729, 803, 820
HgaI GACGC 1 cut(s) 440
HhaI GCGC 5 cut(s) 192, 518, 537, 554, 620
Hin1I GRCGYC 3 cut(s) 117, 190, 432
Hin1II CATG 5 cut(s) 189, 343, 613, 685, 973
Hin6I GCGC 5 cut(s) 190, 516, 535, 552, 618
HinP1I GCGC 5 cut(s) 190, 516, 535, 552, 618
HinfI GANTC 2 cut(s) 566, 1028
HpaII CCGG 9 cut(s) 288, 481, 563, 588, 624, 708, 729, 803, 820
HphI GGTGA 8 cut(s) 9, 277, 370, 484, 520, 769, 844, 893
Hpy166II GTNNAC 2 cut(s) 361, 808
Hpy188I TCNGA 4 cut(s) 522, 571, 793, 995
Hpy188III TCNNGA 3 cut(s) 388, 445, 563
Hpy8I GTNNAC 2 cut(s) 361, 808
Hpy99I CGWCG 7 cut(s) 119, 122, 389, 434, 469, 472, 587
HpyAV CCTTC 6 cut(s) 30, 39, 157, 451, 680, 887
HpyCH4III ACNGT 1 cut(s) 455
HpyCH4IV ACGT 3 cut(s) 117, 357, 408
HpyCH4V TGCA 5 cut(s) 180, 261, 372, 953, 1040
HpyF10VI GCNNNNNNNGC 5 cut(s) 532, 549, 600, 636, 771
HpySE526I ACGT 3 cut(s) 117, 357, 408
Hsp92I GRCGYC 3 cut(s) 117, 190, 432
Hsp92II CATG 5 cut(s) 189, 343, 613, 685, 973
HspAI GCGC 5 cut(s) 190, 516, 535, 552, 618
KasI GGCGCC 1 cut(s) 189
Kpn2I TCCGGA 1 cut(s) 562
Kzo9I GATC 4 cut(s) 390, 447, 576, 946
LmnI GCTCC 4 cut(s) 443, 523, 540, 627
Lsp1109I GCAGC 2 cut(s) 252, 678
LweI GCATC 3 cut(s) 270, 513, 1016
MabI ACCWGGT 1 cut(s) 958
MaeII ACGT 3 cut(s) 117, 357, 408
MaeIII GTNAC 3 cut(s) 283, 347, 1029
MalI GATC 4 cut(s) 392, 449, 578, 948
MbiI CCGCTC 1 cut(s) 438
MboI GATC 4 cut(s) 390, 447, 576, 946
MhlI GDGCHC 3 cut(s) 329, 399, 641
MlsI TGGCCA 1 cut(s) 680
MluCI AATT 2 cut(s) 839, 921
MluNI TGGCCA 1 cut(s) 680
Mly113I GGCGCC 1 cut(s) 190
MlyI GAGTC 1 cut(s) 1037
MmeI TCCRAC 1 cut(s) 594
Mox20I TGGCCA 1 cut(s) 680
MroI TCCGGA 1 cut(s) 562
MscI TGGCCA 1 cut(s) 680
MseI TTAA 1 cut(s) 128
Msp20I TGGCCA 1 cut(s) 680
MspI CCGG 9 cut(s) 288, 481, 563, 588, 624, 708, 729, 803, 820
MspR9I CCNGG 9 cut(s) 102, 322, 505, 625, 709, 776, 781, 960, 1004
Mva1269I GAATGC 1 cut(s) 829
MvaI CCWGG 7 cut(s) 102, 322, 505, 776, 781, 960, 1004
MvnI CGCG 5 cut(s) 389, 516, 535, 537, 548
MwoI GCNNNNNNNGC 5 cut(s) 532, 549, 600, 636, 771
NarI GGCGCC 1 cut(s) 190
NciI CCSGG 2 cut(s) 625, 709
NcoI CCATGG 1 cut(s) 681
NdeII GATC 4 cut(s) 390, 447, 576, 946
NlaIII CATG 5 cut(s) 189, 343, 613, 685, 973
NlaIV GGNNCC 8 cut(s) 191, 276, 326, 397, 398, 561, 598, 801
NmeAIII GCCGAG 2 cut(s) 393, 720
NmuCI GTSAC 2 cut(s) 283, 1029
NruI TCGCGA 1 cut(s) 389
PaqCI CACCTGC 2 cut(s) 185, 855
PceI AGGCCT 1 cut(s) 105
PctI GAATGC 1 cut(s) 829
PfeI GAWTC 1 cut(s) 566
PkrI GCNGC 5 cut(s) 242, 419, 502, 622, 693
Ple19I CGATCG 2 cut(s) 393, 450
PleI GAGTC 1 cut(s) 1036
PluTI GGCGCC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 1036
PpuMI RGGWCCY 1 cut(s) 274
PsiI TTATAA 1 cut(s) 1087
Psp124BI GAGCTC 1 cut(s) 641
Psp5II RGGWCCY 1 cut(s) 274
Psp6I CCWGG 7 cut(s) 100, 320, 503, 774, 779, 958, 1002
PspGI CCWGG 7 cut(s) 100, 320, 503, 774, 779, 958, 1002
PspN4I GGNNCC 8 cut(s) 191, 276, 326, 397, 398, 561, 598, 801
PspOMI GGGCCC 1 cut(s) 395
PspPI GGNCC 5 cut(s) 274, 290, 395, 396, 705
PspPPI RGGWCCY 1 cut(s) 274
PvuI CGATCG 2 cut(s) 393, 450
RruI TCGCGA 1 cut(s) 389
RsaI GTAC 2 cut(s) 512, 770
RsaNI GTAC 2 cut(s) 511, 769
SacI GAGCTC 1 cut(s) 641
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 5 cut(s) 241, 418, 501, 621, 692
Sau3AI GATC 4 cut(s) 390, 447, 576, 946
Sau96I GGNCC 5 cut(s) 274, 290, 395, 396, 705
SchI GAGTC 1 cut(s) 1037
ScrFI CCNGG 9 cut(s) 102, 322, 505, 625, 709, 776, 781, 960, 1004
SduI GDGCHC 3 cut(s) 329, 399, 641
SexAI ACCWGGT 1 cut(s) 958
SfaNI GCATC 3 cut(s) 270, 513, 1016
SfoI GGCGCC 1 cut(s) 191
SinI GGWCC 2 cut(s) 274, 290
Sse9I AATT 2 cut(s) 839, 921
SseBI AGGCCT 1 cut(s) 105
SspDI GGCGCC 1 cut(s) 189
SstI GAGCTC 1 cut(s) 641
StuI AGGCCT 1 cut(s) 105
StyD4I CCNGG 9 cut(s) 100, 320, 503, 623, 707, 774, 779, 958, 1002
StyI CCWWGG 2 cut(s) 555, 681
TaaI ACNGT 1 cut(s) 455
TaiI ACGT 3 cut(s) 120, 360, 411
TaqI TCGA 3 cut(s) 303, 429, 450
TasI AATT 2 cut(s) 839, 921
TauI GCSGC 3 cut(s) 420, 503, 623
TfiI GAWTC 1 cut(s) 566
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TseFI GTSAC 2 cut(s) 283, 1029
TseI GCWGC 2 cut(s) 240, 691
Tsp45I GTSAC 2 cut(s) 283, 1029
TspDTI ATGAA 4 cut(s) 12, 36, 42, 958
TspGWI ACGGA 1 cut(s) 373
VpaK11BI GGWCC 2 cut(s) 274, 290
XmiI GTMKAC 1 cut(s) 360
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.