Transcription initiation factor IIF subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G52270 |
| rosa_chinensis | RchiOBHm_Chr1g0318621 RchiOBHm_Chr2g0111291 RchiOBHm_Chr6g0302021 |
| rosa_laevigata | RLG00000011202 RLG00000017882 |
| rosa_multiflora | Rmu_co8206050.1_g000001 Rmu_sc0005033.1_g000009 Rmu_sc0040640.1_g000001 Rmu_sc0040770.1_g000002 |
| rosa_roxburghii | Rroxscaffold_7G00166180 |
| rosa_rugosa | Rorug05G0494200 Rorug05G0591000.1 Rorug06G0311100 |
| rosa_samantha | Rh1AG035400 Rh1DG171200 Rh2CG228600 Rh2DG233100 Rh6AG423800 Rh6BG478500 Rh6CG436800 Rh6DG423900 |
| rosa_wichuraiana | Rw2G009110 Rw2G017410 Rw6G036710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 162 |
| AccBSI | CCGCTC | 1 cut(s) | 226 |
| AciI | CCGC | 1 cut(s) | 224 |
| AclWI | GGATC | 2 cut(s) | 179, 215 |
| AcoI | YGGCCR | 1 cut(s) | 153 |
| AcvI | CACGTG | 1 cut(s) | 49 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 162 |
| AluBI | AGCT | 3 cut(s) | 13, 121, 139 |
| AluI | AGCT | 3 cut(s) | 13, 121, 139 |
| AlwI | GGATC | 2 cut(s) | 179, 215 |
| AoxI | GGCC | 1 cut(s) | 153 |
| AspS9I | GGNCC | 1 cut(s) | 76 |
| AsuHPI | GGTGA | 2 cut(s) | 73, 182 |
| AvaII | GGWCC | 1 cut(s) | 76 |
| BalI | TGGCCA | 1 cut(s) | 155 |
| BbrPI | CACGTG | 1 cut(s) | 49 |
| BbsI | GAAGAC | 1 cut(s) | 71 |
| BciVI | GTATCC | 1 cut(s) | 94 |
| BfuI | GTATCC | 1 cut(s) | 94 |
| Bme18I | GGWCC | 1 cut(s) | 76 |
| BmgT120I | GGNCC | 1 cut(s) | 76 |
| BpiI | GAAGAC | 1 cut(s) | 71 |
| Bsa29I | ATCGAT | 1 cut(s) | 234 |
| BsaAI | YACGTR | 1 cut(s) | 49 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 29, 164, 194 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 162 |
| BseCI | ATCGAT | 1 cut(s) | 234 |
| BseGI | GGATG | 1 cut(s) | 329 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 162 |
| BseRI | GAGGAG | 3 cut(s) | 20, 86, 235 |
| BsgI | GTGCAG | 2 cut(s) | 272, 279 |
| BshFI | GGCC | 1 cut(s) | 155 |
| BshVI | ATCGAT | 1 cut(s) | 234 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 162 |
| BsnI | GGCC | 1 cut(s) | 155 |
| Bsp143I | GATC | 2 cut(s) | 184, 220 |
| BspACI | CCGC | 1 cut(s) | 224 |
| BspANI | GGCC | 1 cut(s) | 155 |
| BspDI | ATCGAT | 1 cut(s) | 234 |
| BspPI | GGATC | 2 cut(s) | 179, 215 |
| BsrBI | CCGCTC | 1 cut(s) | 226 |
| BssMI | GATC | 2 cut(s) | 184, 220 |
| Bst4CI | ACNGT | 1 cut(s) | 151 |
| Bst6I | CTCTTC | 1 cut(s) | 17 |
| BstBAI | YACGTR | 1 cut(s) | 49 |
| BstF5I | GGATG | 1 cut(s) | 329 |
| BstKTI | GATC | 2 cut(s) | 187, 223 |
| BstMBI | GATC | 2 cut(s) | 184, 220 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 127, 136, 206 |
| BstV2I | GAAGAC | 1 cut(s) | 71 |
| Bsu15I | ATCGAT | 1 cut(s) | 234 |
| BsuI | GTATCC | 1 cut(s) | 94 |
| BsuRI | GGCC | 1 cut(s) | 155 |
| BsuTUI | ATCGAT | 1 cut(s) | 234 |
| BtsCI | GGATG | 1 cut(s) | 329 |
| Cfr13I | GGNCC | 1 cut(s) | 76 |
| ClaI | ATCGAT | 1 cut(s) | 234 |
| CviJI | RGCY | 7 cut(s) | 13, 113, 121, 130, 139, 155, 209 |
| CviKI_1 | RGCY | 7 cut(s) | 13, 113, 121, 130, 139, 155, 209 |
| DpnI | GATC | 2 cut(s) | 186, 222 |
| DpnII | GATC | 2 cut(s) | 184, 220 |
| EaeI | YGGCCR | 1 cut(s) | 153 |
| Eam1104I | CTCTTC | 1 cut(s) | 17 |
| EarI | CTCTTC | 1 cut(s) | 17 |
| Eco47I | GGWCC | 1 cut(s) | 76 |
| Eco72I | CACGTG | 1 cut(s) | 49 |
| FaiI | YATR | 5 cut(s) | 84, 267, 291, 335, 337 |
| FokI | GGATG | 1 cut(s) | 316 |
| HaeIII | GGCC | 1 cut(s) | 155 |
| HinfI | GANTC | 1 cut(s) | 27 |
| HphI | GGTGA | 2 cut(s) | 73, 182 |
| Hpy188I | TCNGA | 2 cut(s) | 37, 184 |
| Hpy99I | CGWCG | 1 cut(s) | 22 |
| HpyAV | CCTTC | 3 cut(s) | 49, 186, 205 |
| HpyCH4III | ACNGT | 1 cut(s) | 151 |
| HpyCH4IV | ACGT | 1 cut(s) | 48 |
| HpyCH4V | TGCA | 2 cut(s) | 253, 296 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 127, 136, 206 |
| HpySE526I | ACGT | 1 cut(s) | 48 |
| Kzo9I | GATC | 2 cut(s) | 184, 220 |
| LpnPI | CCDG | 1 cut(s) | 107 |
| MaeII | ACGT | 1 cut(s) | 48 |
| MalI | GATC | 2 cut(s) | 186, 222 |
| MbiI | CCGCTC | 1 cut(s) | 226 |
| MboI | GATC | 2 cut(s) | 184, 220 |
| MboII | GAAGA | 2 cut(s) | 34, 76 |
| MlsI | TGGCCA | 1 cut(s) | 155 |
| MluNI | TGGCCA | 1 cut(s) | 155 |
| MlyI | GAGTC | 1 cut(s) | 36 |
| Mox20I | TGGCCA | 1 cut(s) | 155 |
| MscI | TGGCCA | 1 cut(s) | 155 |
| MseI | TTAA | 1 cut(s) | 318 |
| Msp20I | TGGCCA | 1 cut(s) | 155 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 127, 136, 206 |
| NdeII | GATC | 2 cut(s) | 184, 220 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 225 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 162 |
| PleI | GAGTC | 1 cut(s) | 35 |
| PmaCI | CACGTG | 1 cut(s) | 49 |
| PmlI | CACGTG | 1 cut(s) | 49 |
| PpsI | GAGTC | 1 cut(s) | 35 |
| Ppu21I | YACGTR | 1 cut(s) | 49 |
| PspCI | CACGTG | 1 cut(s) | 49 |
| PspPI | GGNCC | 1 cut(s) | 76 |
| SaqAI | TTAA | 1 cut(s) | 318 |
| Sau3AI | GATC | 2 cut(s) | 184, 220 |
| Sau96I | GGNCC | 1 cut(s) | 76 |
| SchI | GAGTC | 1 cut(s) | 36 |
| SetI | ASST | 7 cut(s) | 15, 51, 63, 123, 141, 245, 316 |
| SinI | GGWCC | 1 cut(s) | 76 |
| SsiI | CCGC | 1 cut(s) | 224 |
| TaaI | ACNGT | 1 cut(s) | 151 |
| TaiI | ACGT | 1 cut(s) | 51 |
| TaqI | TCGA | 4 cut(s) | 20, 219, 228, 234 |
| Tru1I | TTAA | 1 cut(s) | 318 |
| Tru9I | TTAA | 1 cut(s) | 318 |
| TspDTI | ATGAA | 1 cut(s) | 149 |
| TspGWI | ACGGA | 1 cut(s) | 83 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 162 |
| VpaK11BI | GGWCC | 1 cut(s) | 76 |