Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007079

Physical Location & Seq

Genomic Coordinates Forward (+)

9137264 .. 9137842

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G009110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAGGTTGCTCCCACTGAGGCTGGGATGAAGCCGAAGAATTATTCTATGAACATGTCGAAAGACTTTATTCCTATGTGCGTTTTCTCGGAGGGAAATCAAGGCAAGATTGCTGTGGAAGGAAAAGTAGAGCACAAGTTTGACATGAAGCCCCATGGTACAAACTTTGAAGAGTATGGGAAGATGTGTCGTGAAAGGACAAACAAGTCCATGATCAAGAATAGACAAATACAGGTTATTGATAATGACCGAGGAGTACATATGAGGCCCATGCCTGGTATGATTGGCTTGATTTCTACCAATGCCAAGGATAAGAAGAAACCTGTACCAATTAAACAATCAGATGTGAAAAGGACTAGAAGGGATCGTGGGGAACTGGAGGATATAATGTTCAAGGGAACCAACCAGGGTACTTATGAGCTTAAGCCAGAGTACAAGACATCTGTTGATGATACACCTGCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIIF_beta

Protein Analysis

155

Amino Acids

17.72

Weight (kDa)

9.15

Isoelectric Point (pI)

19.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52270
rosa_chinensis	RchiOBHm_Chr1g0318621 RchiOBHm_Chr2g0111291 RchiOBHm_Chr6g0302021
rosa_laevigata	RLG00000011202 RLG00000017882
rosa_multiflora	Rmu_co8206050.1_g000001 Rmu_sc0005033.1_g000009 Rmu_sc0040640.1_g000001 Rmu_sc0040770.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166180
rosa_rugosa	Rorug05G0494200 Rorug05G0591000.1 Rorug06G0311100
rosa_samantha	Rh1AG035400 Rh1DG171200 Rh2CG228600 Rh2DG233100 Rh6AG423800 Rh6BG478500 Rh6CG436800 Rh6DG423900
rosa_wichuraiana	Rw2G009110 Rw2G017410 Rw6G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	205
AclWI	GGATC	1 cut(s)	372
AfaI	GTAC	5 cut(s)	160, 258, 327, 412, 434
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflII	CTTAAG	1 cut(s)	422
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	2 cut(s)	170, 394
AjnI	CCWGG	2 cut(s)	274, 405
AloI	GAACNNNNNNTCC	2 cut(s)	374, 406
AluBI	AGCT	1 cut(s)	421
AluI	AGCT	1 cut(s)	421
Alw21I	GWGCWC	1 cut(s)	135
AlwI	GGATC	1 cut(s)	372
AoxI	GGCC	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	135
BciT130I	CCWGG	2 cut(s)	276, 407
BclI	TGATCA	1 cut(s)	213
BfaI	CTAG	1 cut(s)	357
BfmI	CTRYAG	1 cut(s)	459
BfrI	CTTAAG	1 cut(s)	422
Bme1390I	CCNGG	2 cut(s)	276, 407
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	400
BmrFI	CCNGG	2 cut(s)	276, 407
BpmI	CTGGAG	1 cut(s)	398
BsaJI	CCNNGG	4 cut(s)	154, 250, 306, 406
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	381
BseBI	CCWGG	2 cut(s)	276, 407
BseDI	CCNNGG	4 cut(s)	154, 250, 306, 406
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	1 cut(s)	381
BseRI	GAGGAG	1 cut(s)	267
BseYI	CCCAGC	1 cut(s)	23
BshFI	GGCC	1 cut(s)	268
BsiHKAI	GWGCWC	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	275
BsnI	GGCC	1 cut(s)	268
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	213, 364
Bsp19I	CCATGG	1 cut(s)	154
BspANI	GGCC	1 cut(s)	268
BspCNI	CTCAG	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	400
BspMAI	CTGCAG	1 cut(s)	463
BspPI	GGATC	1 cut(s)	372
BspTI	CTTAAG	1 cut(s)	422
BsrI	ACTGG	1 cut(s)	381
BssECI	CCNNGG	4 cut(s)	154, 250, 306, 406
BssMI	GATC	2 cut(s)	213, 364
BssT1I	CCWWGG	2 cut(s)	154, 306
Bst2UI	CCWGG	2 cut(s)	276, 407
Bst6I	CTCTTC	1 cut(s)	165
BstAFI	CTTAAG	1 cut(s)	422
BstDEI	CTNAG	1 cut(s)	18
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	1 cut(s)	33
BstKTI	GATC	2 cut(s)	216, 367
BstMBI	GATC	2 cut(s)	213, 364
BstNI	CCWGG	2 cut(s)	276, 407
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	2 cut(s)	274, 405
BstSFI	CTRYAG	1 cut(s)	459
BsuRI	GGCC	1 cut(s)	268
BtgI	CCRYGG	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	267
Csp6I	GTAC	5 cut(s)	159, 257, 326, 411, 433
CviAII	CATG	5 cut(s)	55, 145, 155, 211, 271
CviJI	RGCY	7 cut(s)	23, 34, 151, 268, 288, 421, 427
CviKI_1	RGCY	7 cut(s)	23, 34, 151, 268, 288, 421, 427
CviQI	GTAC	5 cut(s)	159, 257, 326, 411, 433
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	2 cut(s)	215, 366
DpnII	GATC	2 cut(s)	213, 364
DrdI	GACNNNNNNGTC	1 cut(s)	205
DseDI	GACNNNNNNGTC	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco130I	CCWWGG	2 cut(s)	154, 306
EcoRII	CCWGG	2 cut(s)	274, 405
EcoT14I	CCWWGG	2 cut(s)	154, 306
ErhI	CCWWGG	2 cut(s)	154, 306
FaeI	CATG	5 cut(s)	58, 148, 158, 214, 274
FatI	CATG	5 cut(s)	54, 144, 154, 210, 270
FauNDI	CATATG	1 cut(s)	261
FbaI	TGATCA	1 cut(s)	213
FokI	GGATG	1 cut(s)	40
FspBI	CTAG	1 cut(s)	357
GsaI	CCCAGC	1 cut(s)	27
GsuI	CTGGAG	1 cut(s)	398
HaeIII	GGCC	1 cut(s)	268
Hin1II	CATG	5 cut(s)	58, 148, 158, 214, 274
Hpy188I	TCNGA	2 cut(s)	91, 343
Hpy188III	TCNNGA	2 cut(s)	191, 217
HpyAV	CCTTC	2 cut(s)	113, 354
HpyCH4V	TGCA	1 cut(s)	461
HpyF3I	CTNAG	1 cut(s)	18
Hsp92II	CATG	5 cut(s)	58, 148, 158, 214, 274
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	2 cut(s)	213, 364
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	9 cut(s)	9, 218, 261, 288, 336, 362, 392, 419, 441
MaeI	CTAG	1 cut(s)	357
MalI	GATC	2 cut(s)	215, 366
MboI	GATC	2 cut(s)	213, 364
MboII	GAAGA	4 cut(s)	49, 182, 193, 328
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	2 cut(s)	40, 330
MnlI	CCTC	5 cut(s)	13, 85, 245, 258, 373
MseI	TTAA	2 cut(s)	333, 423
MspCI	CTTAAG	1 cut(s)	422
MspR9I	CCNGG	2 cut(s)	276, 407
MvaI	CCWGG	2 cut(s)	276, 407
NcoI	CCATGG	1 cut(s)	154
NdeI	CATATG	1 cut(s)	261
NdeII	GATC	2 cut(s)	213, 364
NlaIII	CATG	5 cut(s)	58, 148, 158, 214, 274
NlaIV	GGNNCC	1 cut(s)	400
NspI	RCATGY	1 cut(s)	58
PciI	ACATGT	1 cut(s)	54
PscI	ACATGT	1 cut(s)	54
Psp6I	CCWGG	2 cut(s)	274, 405
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	2 cut(s)	274, 405
PspN4I	GGNNCC	1 cut(s)	400
PspPI	GGNCC	1 cut(s)	267
PstI	CTGCAG	1 cut(s)	463
RsaI	GTAC	5 cut(s)	160, 258, 327, 412, 434
RsaNI	GTAC	5 cut(s)	159, 257, 326, 411, 433
SaqAI	TTAA	2 cut(s)	333, 423
Sau3AI	GATC	2 cut(s)	213, 364
Sau96I	GGNCC	1 cut(s)	267
ScrFI	CCNGG	2 cut(s)	276, 407
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	5 cut(s)	9, 237, 325, 423, 460
SfcI	CTRYAG	1 cut(s)	459
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	2 cut(s)	40, 330
SspMI	CTAG	1 cut(s)	357
StyD4I	CCNGG	2 cut(s)	274, 405
StyI	CCWWGG	2 cut(s)	154, 306
TaqI	TCGA	1 cut(s)	59
TaqII	GACCGA	1 cut(s)	264
TasI	AATT	2 cut(s)	40, 330
TatI	WGTACW	2 cut(s)	256, 432
Tru1I	TTAA	2 cut(s)	333, 423
Tru9I	TTAA	2 cut(s)	333, 423
TscAI	CASTG	1 cut(s)	22
TspDTI	ATGAA	3 cut(s)	44, 65, 161
TspRI	CASTG	1 cut(s)	22
Vha464I	CTTAAG	1 cut(s)	422
XceI	RCATGY	1 cut(s)	58
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.