Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007079

Physical Location & Seq

Genomic Coordinates Forward (+)

6193891 .. 6195272

Gene Structure 1382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG035400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAGGAGAAGCCGTCGTCGAAGAGAATCAAGTCAGAGGACGACCACGTGGCGAAGAAGGTGAAGACGGAGGAGGACCATTGCCGTAGCAAAAGCTTGGATACTGCGAAAGTCGATAAGTTGGTGTGGCTGATGAAGCTGTCGCAGGCAGTGGCCAAGTCTTGGAACTCACACCCTTCCTCTGATCTTCACCCCGTCGCCAAAGTCATCCTCTCCCTCGATCCAACCGATGAGACCTCCGCTGTGCAGTTCAAAATGGAGGGGTCTGCGACTGAGGTTGGTATGAAGCCGAAGAGTTATTCTATGAACACGTCGAAAGACTTTATTCCCATGTGCGTTTTTCCTGAGGCAAATCAAGGCAAGATTGTTGTGGAAGGGAAAGTAGAGCACTATGAAGCCCCATGGTACAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIIF_beta

Protein Analysis

138

Amino Acids

15.54

Weight (kDa)

6.96

Isoelectric Point (pI)

29.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52270
rosa_chinensis	RchiOBHm_Chr1g0318621 RchiOBHm_Chr2g0111291 RchiOBHm_Chr6g0302021
rosa_laevigata	RLG00000011202 RLG00000017882
rosa_multiflora	Rmu_co8206050.1_g000001 Rmu_sc0005033.1_g000009 Rmu_sc0040640.1_g000001 Rmu_sc0040770.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166180
rosa_rugosa	Rorug05G0494200 Rorug05G0591000.1 Rorug06G0311100
rosa_samantha	Rh1AG035400 Rh1DG171200 Rh2CG228600 Rh2DG233100 Rh6AG423800 Rh6BG478500 Rh6CG436800 Rh6DG423900
rosa_wichuraiana	Rw2G009110 Rw2G017410 Rw6G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	162
AciI	CCGC	1 cut(s)	240
AclWI	GGATC	1 cut(s)	215
AcoI	YGGCCR	1 cut(s)	153
AcvI	CACGTG	1 cut(s)	49
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	1 cut(s)	162
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	1 cut(s)	253
AjiI	CACGTC	1 cut(s)	312
AluBI	AGCT	2 cut(s)	96, 139
AluI	AGCT	2 cut(s)	96, 139
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	1 cut(s)	215
AoxI	GGCC	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	2 cut(s)	73, 182
AvaII	GGWCC	1 cut(s)	76
AxyI	CCTNAGG	1 cut(s)	345
BalI	TGGCCA	1 cut(s)	155
BbrPI	CACGTG	1 cut(s)	49
BbsI	GAAGAC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	390
BceAI	ACGGC	1 cut(s)	69
BciVI	GTATCC	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	227
BfuI	GTATCC	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	76
BmgBI	CACGTC	1 cut(s)	312
BmgT120I	GGNCC	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	71
BsaAI	YACGTR	1 cut(s)	49
BsaI	GGTCTC	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	401
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse21I	CCTNAGG	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	79
BseDI	CCNNGG	1 cut(s)	401
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMI	GCAATG	1 cut(s)	79
BseMII	CTCAG	2 cut(s)	264, 336
BseRI	GAGGAG	2 cut(s)	20, 86
BsgI	GTGCAG	1 cut(s)	266
BshFI	GGCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	390
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmAI	GTCTC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	155
Bso31I	GGTCTC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	184, 220
Bsp19I	CCATGG	1 cut(s)	401
BspACI	CCGC	1 cut(s)	240
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	2 cut(s)	265, 337
BspPI	GGATC	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	401
BssMI	GATC	2 cut(s)	184, 220
BssT1I	CCWWGG	1 cut(s)	401
Bst6I	CTCTTC	2 cut(s)	17, 287
BstBAI	YACGTR	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	273, 345
BstDSI	CCRYGG	1 cut(s)	401
BstF5I	GGATG	1 cut(s)	207
BstKTI	GATC	2 cut(s)	187, 223
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	2 cut(s)	184, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstV2I	GAAGAC	1 cut(s)	71
Bsu36I	CCTNAGG	1 cut(s)	345
BsuI	GTATCC	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	401
BtrI	CACGTC	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	207
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	2 cut(s)	331, 402
CviJI	RGCY	7 cut(s)	13, 96, 130, 139, 155, 289, 398
CviKI_1	RGCY	7 cut(s)	13, 96, 130, 139, 155, 289, 398
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	2 cut(s)	273, 345
DpnI	GATC	2 cut(s)	186, 222
DpnII	GATC	2 cut(s)	184, 220
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	2 cut(s)	17, 287
EarI	CTCTTC	2 cut(s)	17, 287
Eco130I	CCWWGG	1 cut(s)	401
Eco31I	GGTCTC	1 cut(s)	227
Eco47I	GGWCC	1 cut(s)	76
Eco72I	CACGTG	1 cut(s)	49
Eco81I	CCTNAGG	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	401
ErhI	CCWWGG	1 cut(s)	401
FaeI	CATG	2 cut(s)	334, 405
FaiI	YATR	5 cut(s)	284, 305, 332, 393, 403
FatI	CATG	2 cut(s)	330, 401
FokI	GGATG	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	155
Hin1II	CATG	2 cut(s)	334, 405
HindIII	AAGCTT	1 cut(s)	94
HinfI	GANTC	1 cut(s)	27
HphI	GGTGA	2 cut(s)	73, 182
Hpy188I	TCNGA	2 cut(s)	37, 184
Hpy188III	TCNNGA	1 cut(s)	344
Hpy99I	CGWCG	4 cut(s)	19, 22, 200, 316
HpyAV	CCTTC	3 cut(s)	52, 186, 368
HpyCH4IV	ACGT	2 cut(s)	48, 311
HpyCH4V	TGCA	1 cut(s)	247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	2 cut(s)	273, 345
HpySE526I	ACGT	2 cut(s)	48, 311
Hsp92II	CATG	2 cut(s)	334, 405
Kzo9I	GATC	2 cut(s)	184, 220
LpnPI	CCDG	2 cut(s)	131, 357
MaeII	ACGT	2 cut(s)	48, 311
MalI	GATC	2 cut(s)	186, 222
MboI	GATC	2 cut(s)	184, 220
MboII	GAAGA	5 cut(s)	34, 67, 76, 179, 304
MhlI	GDGCHC	1 cut(s)	390
MlsI	TGGCCA	1 cut(s)	155
MluNI	TGGCCA	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	248
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
Msp20I	TGGCCA	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	242
MwoI	GCNNNNNNNGC	1 cut(s)	136
NcoI	CCATGG	1 cut(s)	401
NdeII	GATC	2 cut(s)	184, 220
NlaIII	CATG	2 cut(s)	334, 405
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	27
PflMI	CCANNNNNTGG	1 cut(s)	162
PmaCI	CACGTG	1 cut(s)	49
PmlI	CACGTG	1 cut(s)	49
Ppu21I	YACGTR	1 cut(s)	49
PspCI	CACGTG	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	76
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
Sau3AI	GATC	2 cut(s)	184, 220
Sau96I	GGNCC	1 cut(s)	76
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	7 cut(s)	51, 63, 98, 141, 239, 279, 314
SinI	GGWCC	1 cut(s)	76
SsiI	CCGC	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	401
TaiI	ACGT	2 cut(s)	51, 314
TaqI	TCGA	4 cut(s)	20, 114, 219, 314
TfiI	GAWTC	1 cut(s)	27
TscAI	CASTG	1 cut(s)	156
TspDTI	ATGAA	4 cut(s)	149, 299, 320, 408
TspGWI	ACGGA	1 cut(s)	83
TspRI	CASTG	1 cut(s)	156
Van91I	CCANNNNNTGG	1 cut(s)	162
VpaK11BI	GGWCC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.