Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040640.1

Orthogroup ID

OG0007079

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 800

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040640.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

gataagaagaaacctgtaccggttaaacaatcagatgtcaaaaggactagaagggatcgtggggaactggaggatataatgttcaagttatttgaaagacaaccaaattgggcattgaagcagcttgtgcaagagactgatcaacctgcgcaattcttgaaagagatactaaatgagctctgtgtatacaacaaaaggggaaccaaccagggtacttatgagcttaagccagagtacaagaaatctgttgatgatacacctgcagagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIIF_beta

Protein Analysis

89

Amino Acids

10.54

Weight (kDa)

8.7

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52270
rosa_chinensis	RchiOBHm_Chr1g0318621 RchiOBHm_Chr2g0111291 RchiOBHm_Chr6g0302021
rosa_laevigata	RLG00000011202 RLG00000017882
rosa_multiflora	Rmu_co8206050.1_g000001 Rmu_sc0005033.1_g000009 Rmu_sc0040640.1_g000001 Rmu_sc0040770.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166180
rosa_rugosa	Rorug05G0494200 Rorug05G0591000.1 Rorug06G0311100
rosa_samantha	Rh1AG035400 Rh1DG171200 Rh2CG228600 Rh2DG233100 Rh6AG423800 Rh6BG478500 Rh6CG436800 Rh6DG423900
rosa_wichuraiana	Rw2G009110 Rw2G017410 Rw6G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	150
Acc36I	ACCTGC	1 cut(s)	154
AccI	GTMKAC	1 cut(s)	186
AclWI	GGATC	1 cut(s)	63
AfaI	GTAC	3 cut(s)	18, 214, 236
AflII	CTTAAG	1 cut(s)	224
AgeI	ACCGGT	1 cut(s)	19
AgsI	TTSAA	4 cut(s)	85, 95, 118, 160
AjnI	CCWGG	1 cut(s)	207
AloI	GAACNNNNNNTCC	2 cut(s)	65, 97
AluBI	AGCT	3 cut(s)	124, 178, 223
AluI	AGCT	3 cut(s)	124, 178, 223
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	121
AsiGI	ACCGGT	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	151
BanII	GRGCYC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	209
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	48
BfmI	CTRYAG	1 cut(s)	261
BfrI	CTTAAG	1 cut(s)	224
BfuAI	ACCTGC	1 cut(s)	154
BisI	GCNGC	1 cut(s)	122
BlsI	GCNGC	1 cut(s)	123
Bme1390I	CCNGG	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	208
BsaWI	WCCGGW	1 cut(s)	19
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	208
BseNI	ACTGG	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	133
BshTI	ACCGGT	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	55, 139
BspLI	GGNNCC	1 cut(s)	202
BspMAI	CTGCAG	1 cut(s)	265
BspMI	ACCTGC	1 cut(s)	154
BspPI	GGATC	1 cut(s)	63
BspTI	CTTAAG	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	72
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	2 cut(s)	55, 139
BssNAI	GTATAC	1 cut(s)	187
Bst1107I	GTATAC	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	209
BstAFI	CTTAAG	1 cut(s)	224
BstAPI	GCANNNNNTGC	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	2 cut(s)	58, 142
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	2 cut(s)	55, 139
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNI	CCWGG	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	207
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	133
BstZ17I	GTATAC	1 cut(s)	187
BveI	ACCTGC	1 cut(s)	154
CfoI	GCGC	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	19
Csp6I	GTAC	3 cut(s)	17, 213, 235
CspAI	ACCGGT	1 cut(s)	19
CviJI	RGCY	4 cut(s)	124, 178, 223, 229
CviKI_1	RGCY	4 cut(s)	124, 178, 223, 229
CviQI	GTAC	3 cut(s)	17, 213, 235
DpnI	GATC	2 cut(s)	57, 141
DpnII	GATC	2 cut(s)	55, 139
Ecl136II	GAGCTC	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	180
FaiI	YATR	3 cut(s)	77, 187, 219
FbaI	TGATCA	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	122
FspBI	CTAG	1 cut(s)	48
FspI	TGCGCA	1 cut(s)	150
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	1 cut(s)	122
GsuI	CTGGAG	1 cut(s)	89
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	151
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	20
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	1 cut(s)	157
Hpy8I	GTNNAC	1 cut(s)	187
HpyAV	CCTTC	1 cut(s)	45
HpyCH4V	TGCA	2 cut(s)	130, 263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HspAI	GCGC	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	55, 139
LpnPI	CCDG	7 cut(s)	27, 33, 53, 159, 194, 221, 243
Lsp1109I	GCAGC	1 cut(s)	133
MaeI	CTAG	1 cut(s)	48
MalI	GATC	2 cut(s)	57, 141
MboI	GATC	2 cut(s)	55, 139
MboII	GAAGA	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	2 cut(s)	106, 152
MnlI	CCTC	1 cut(s)	64
MseI	TTAA	2 cut(s)	24, 225
MspCI	CTTAAG	1 cut(s)	224
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeII	GATC	2 cut(s)	55, 139
NlaIV	GGNNCC	1 cut(s)	202
NsbI	TGCGCA	1 cut(s)	150
PinAI	ACCGGT	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	123
Psp124BI	GAGCTC	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	265
RsaI	GTAC	3 cut(s)	18, 214, 236
RsaNI	GTAC	3 cut(s)	17, 213, 235
SacI	GAGCTC	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	24, 225
SatI	GCNGC	1 cut(s)	122
Sau3AI	GATC	2 cut(s)	55, 139
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	6 cut(s)	16, 126, 148, 180, 225, 262
SfcI	CTRYAG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	2 cut(s)	106, 152
SspMI	CTAG	1 cut(s)	48
SstI	GAGCTC	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	207
TasI	AATT	2 cut(s)	106, 152
TatI	WGTACW	1 cut(s)	234
Tru1I	TTAA	2 cut(s)	24, 225
Tru9I	TTAA	2 cut(s)	24, 225
TseI	GCWGC	1 cut(s)	121
Vha464I	CTTAAG	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.