Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005033.1

Orthogroup ID

OG0007079

Physical Location & Seq

Genomic Coordinates Forward (+)

34709 .. 37430

Gene Structure 2722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005033.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atggaggagaagcgagtcaagtcagaggacgaccacgtggcgaaggaggtgaagacggaggaggaccattacggtagcaaaagcttggatactgcgaaagccgataagctcgtgtggctgatgaagctaccgcagacagtagccaagtctaggaactcgcacccttcctccgatcctcacctcttcgccaacgtagccctctcccttgatccgctcgaaaccgataagacctcctctgtgcaggtaataaaacgtgactccagtgaccgaaattcggcggctggtcaccagaatctgatcaccagagacaggactctggtggccgatcatcgcattctggcaaccaaccatggaactcctgttaccgaaatccgacgaagtctccaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIIF_beta

Protein Analysis

129

Amino Acids

14.45

Weight (kDa)

7.07

Isoelectric Point (pI)

48.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52270
rosa_chinensis	RchiOBHm_Chr1g0318621 RchiOBHm_Chr2g0111291 RchiOBHm_Chr6g0302021
rosa_laevigata	RLG00000011202 RLG00000017882
rosa_multiflora	Rmu_co8206050.1_g000001 Rmu_sc0005033.1_g000009 Rmu_sc0040640.1_g000001 Rmu_sc0040770.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166180
rosa_rugosa	Rorug05G0494200 Rorug05G0591000.1 Rorug06G0311100
rosa_samantha	Rh1AG035400 Rh1DG171200 Rh2CG228600 Rh2DG233100 Rh6AG423800 Rh6BG478500 Rh6CG436800 Rh6DG423900
rosa_wichuraiana	Rw2G009110 Rw2G017410 Rw6G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	232
AccBSI	CCGCTC	1 cut(s)	214
AciI	CCGC	3 cut(s)	131, 212, 278
AclWI	GGATC	2 cut(s)	167, 203
AcoI	YGGCCR	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	271
AcvI	CACGTG	1 cut(s)	37
AfiI	CCNNNNNNNGG	3 cut(s)	150, 274, 309
AluBI	AGCT	3 cut(s)	84, 109, 127
AluI	AGCT	3 cut(s)	84, 109, 127
Alw26I	GTCTC	2 cut(s)	300, 386
AlwI	GGATC	2 cut(s)	167, 203
AlwNI	CAGNNNCTG	1 cut(s)	295
AoxI	GGCC	1 cut(s)	321
ApoI	RAATTY	1 cut(s)	271
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	4 cut(s)	61, 170, 278, 292
AvaII	GGWCC	1 cut(s)	64
BauI	CACGAG	1 cut(s)	110
BbrPI	CACGTG	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	59
BciVI	GTATCC	1 cut(s)	82
BclI	TGATCA	1 cut(s)	297
BcoDI	GTCTC	2 cut(s)	300, 386
BfaI	CTAG	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	232
BfuI	GTATCC	1 cut(s)	82
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	59
BpmI	CTGGAG	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	349
BsaXI	ACNNNNNCTCC	3 cut(s)	152, 182, 366
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 274, 309
Bse1I	ACTGG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	349
BseLI	CCNNNNNNNGG	3 cut(s)	150, 274, 309
BseNI	ACTGG	1 cut(s)	261
BseRI	GAGGAG	3 cut(s)	20, 74, 223
BsgI	GTGCAG	1 cut(s)	260
BshFI	GGCC	1 cut(s)	323
BslI	CCNNNNNNNGG	3 cut(s)	150, 274, 309
BsmAI	GTCTC	2 cut(s)	300, 386
BsmI	GAATGC	1 cut(s)	333
BsnI	GGCC	1 cut(s)	323
Bsp143I	GATC	4 cut(s)	172, 208, 297, 325
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	3 cut(s)	131, 212, 278
BspANI	GGCC	1 cut(s)	323
BspMI	ACCTGC	1 cut(s)	232
BspPI	GGATC	2 cut(s)	167, 203
BsrBI	CCGCTC	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	4 cut(s)	172, 208, 297, 325
BssSI	CACGAG	1 cut(s)	110
BssT1I	CCWWGG	1 cut(s)	349
Bst2BI	CACGAG	1 cut(s)	110
Bst4CI	ACNGT	2 cut(s)	74, 139
Bst6I	CTCTTC	1 cut(s)	188
BstBAI	YACGTR	1 cut(s)	37
BstDSI	CCRYGG	1 cut(s)	349
BstEII	GGTNACC	1 cut(s)	284
BstKTI	GATC	4 cut(s)	175, 211, 300, 328
BstMAI	GTCTC	2 cut(s)	300, 386
BstMBI	GATC	4 cut(s)	172, 208, 297, 325
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 124, 194
BstPI	GGTNACC	1 cut(s)	284
BstV2I	GAAGAC	1 cut(s)	59
BsuI	GTATCC	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	323
BtgI	CCRYGG	1 cut(s)	349
BtgZI	GCGATG	1 cut(s)	314
BtsIMutI	CAGTG	1 cut(s)	268
BveI	ACCTGC	1 cut(s)	232
CaiI	CAGNNNCTG	1 cut(s)	295
Cfr13I	GGNCC	1 cut(s)	64
CviAII	CATG	1 cut(s)	350
CviJI	RGCY	9 cut(s)	84, 101, 109, 118, 127, 143, 197, 281, 323
CviKI_1	RGCY	9 cut(s)	84, 101, 109, 118, 127, 143, 197, 281, 323
DpnI	GATC	4 cut(s)	174, 210, 299, 327
DpnII	GATC	4 cut(s)	172, 208, 297, 325
EaeI	YGGCCR	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	64
Eco72I	CACGTG	1 cut(s)	37
Eco91I	GGTNACC	1 cut(s)	284
EcoO65I	GGTNACC	1 cut(s)	284
EcoT14I	CCWWGG	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	1 cut(s)	353
FaiI	YATR	1 cut(s)	351
FatI	CATG	1 cut(s)	349
FbaI	TGATCA	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	244
HaeIII	GGCC	1 cut(s)	323
Hin1II	CATG	1 cut(s)	353
HindIII	AAGCTT	1 cut(s)	82
HinfI	GANTC	4 cut(s)	15, 257, 292, 313
HphI	GGTGA	4 cut(s)	61, 170, 278, 292
Hpy188I	TCNGA	4 cut(s)	25, 172, 297, 374
Hpy99I	CGWCG	1 cut(s)	378
HpyAV	CCTTC	2 cut(s)	37, 174
HpyCH4III	ACNGT	2 cut(s)	74, 139
HpyCH4IV	ACGT	3 cut(s)	36, 192, 253
HpyCH4V	TGCA	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 124, 194
HpySE526I	ACGT	3 cut(s)	36, 192, 253
Hsp92II	CATG	1 cut(s)	353
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	4 cut(s)	172, 208, 297, 325
LpnPI	CCDG	9 cut(s)	227, 267, 274, 295, 302, 302, 316, 323, 372
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	3 cut(s)	36, 192, 253
MaeIII	GTNAC	4 cut(s)	254, 263, 284, 361
MalI	GATC	4 cut(s)	174, 210, 299, 327
MbiI	CCGCTC	1 cut(s)	214
MboI	GATC	4 cut(s)	172, 208, 297, 325
MboII	GAAGA	2 cut(s)	64, 175
MluCI	AATT	1 cut(s)	271
MlyI	GAGTC	3 cut(s)	24, 251, 307
Mva1269I	GAATGC	1 cut(s)	333
MwoI	GCNNNNNNNGC	3 cut(s)	115, 124, 194
NcoI	CCATGG	1 cut(s)	349
NdeII	GATC	4 cut(s)	172, 208, 297, 325
NlaIII	CATG	1 cut(s)	353
NmuCI	GTSAC	3 cut(s)	254, 263, 284
PctI	GAATGC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	292
PflFI	GACNNNGTC	1 cut(s)	378
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	3 cut(s)	23, 251, 307
PmaCI	CACGTG	1 cut(s)	37
PmlI	CACGTG	1 cut(s)	37
PpsI	GAGTC	3 cut(s)	23, 251, 307
Ppu21I	YACGTR	1 cut(s)	37
PspCI	CACGTG	1 cut(s)	37
PspEI	GGTNACC	1 cut(s)	284
PspPI	GGNCC	1 cut(s)	64
PsrI	GAACNNNNNNTAC	2 cut(s)	346, 378
PstNI	CAGNNNCTG	1 cut(s)	295
PsyI	GACNNNGTC	1 cut(s)	378
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	4 cut(s)	172, 208, 297, 325
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	3 cut(s)	24, 251, 307
SinI	GGWCC	1 cut(s)	64
Sse9I	AATT	1 cut(s)	271
SsiI	CCGC	3 cut(s)	131, 212, 278
SspMI	CTAG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	2 cut(s)	74, 139
TaiI	ACGT	3 cut(s)	39, 195, 256
TaqI	TCGA	1 cut(s)	216
TaqII	GACCGA	1 cut(s)	282
TasI	AATT	1 cut(s)	271
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	1 cut(s)	292
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	3 cut(s)	254, 263, 284
Tsp45I	GTSAC	3 cut(s)	254, 263, 284
TspDTI	ATGAA	1 cut(s)	137
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	268
Tth111I	GACNNNGTC	1 cut(s)	378
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	1 cut(s)	271
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.