Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007079

Physical Location & Seq

Genomic Coordinates Reverse (-)

22591900 .. 22594614

Gene Structure 2715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017882

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGAGGAGACGCCATCGTCGAAGAGAGTCAAGTCAGATGATGACCAGGTGGTGAAGAAGGTGAAGACGGAGGAGGACCATTACGATAGCAAAAGCTTGGATACTACGAAATCTGATAAGCTGGTGTGGCTGATGAAGCTACCGCAGACGGTGGCCAAGTCTTGGAACTTGCACCCTTCCTCCGATCCTCACTCTGTCGCCAGAGTAGCCCTCTCCCTCACTCCGCTCGAAACCGATAAGACCTCCGTTGTGCAGGAATTCGCTACTTTTCTCAATCTGAACAAAGTCTCCAAGAGCGGTTTCACGGTCACCATCACCAAAACCACCTTCTCACCACCACCACTTGCTGCCTCACCACCTCCTACTCCATTTGTCACTACACCCAATCCGACCACCCTTACCCTCTACCACAACCATTCCCAGACCCACTTCTCTAAGTCACTGCCTCTCAACTCCTCATTTCTAATCCCCCAGATCCCTACCTTCACCACCACCAAAACACCACAACCACCATTAAGCTCAACCAACAATCCAATTGCGATTATATATCAACAAATTCCAAGAACTACACCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIIF_beta

Protein Analysis

193

Amino Acids

21.21

Weight (kDa)

9.27

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52270
rosa_chinensis	RchiOBHm_Chr1g0318621 RchiOBHm_Chr2g0111291 RchiOBHm_Chr6g0302021
rosa_laevigata	RLG00000011202 RLG00000017882
rosa_multiflora	Rmu_co8206050.1_g000001 Rmu_sc0005033.1_g000009 Rmu_sc0040640.1_g000001 Rmu_sc0040770.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166180
rosa_rugosa	Rorug05G0494200 Rorug05G0591000.1 Rorug06G0311100
rosa_samantha	Rh1AG035400 Rh1DG171200 Rh2CG228600 Rh2DG233100 Rh6AG423800 Rh6BG478500 Rh6CG436800 Rh6DG423900
rosa_wichuraiana	Rw2G009110 Rw2G017410 Rw6G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	16
AccB7I	CCANNNNNTGG	1 cut(s)	162
AccBSI	CCGCTC	2 cut(s)	226, 297
AciI	CCGC	3 cut(s)	143, 224, 297
AclWI	GGATC	2 cut(s)	179, 469
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	2 cut(s)	257, 555
AcyI	GRCGYC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	162
AjnI	CCWGG	1 cut(s)	45
AjuI	GAANNNNNNNTTGG	4 cut(s)	284, 311, 316, 343
AloI	GAACNNNNNNTCC	2 cut(s)	272, 304
AluBI	AGCT	4 cut(s)	96, 121, 139, 519
AluI	AGCT	4 cut(s)	96, 121, 139, 519
Alw26I	GTCTC	2 cut(s)	2, 292
AlwI	GGATC	2 cut(s)	179, 469
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	2 cut(s)	257, 555
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	7 cut(s)	64, 73, 301, 307, 324, 345, 478
AvaII	GGWCC	1 cut(s)	76
BalI	TGGCCA	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	2 cut(s)	22, 320
BciT130I	CCWGG	1 cut(s)	47
BciVI	GTATCC	1 cut(s)	94
BcoDI	GTCTC	2 cut(s)	2, 292
BfuI	GTATCC	1 cut(s)	94
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
Bme1390I	CCNGG	1 cut(s)	47
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	71
BplI	GAGNNNNNCTC	2 cut(s)	195, 227
BsaHI	GRCGYC	1 cut(s)	11
BsaXI	ACNNNNNCTCC	4 cut(s)	164, 194, 272, 302
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseRI	GAGGAG	3 cut(s)	20, 86, 445
BseXI	GCAGC	1 cut(s)	334
BsgI	GTGCAG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmAI	GTCTC	2 cut(s)	2, 292
BsmBI	CGTCTC	1 cut(s)	2
BsnI	GGCC	1 cut(s)	155
Bsp143I	GATC	2 cut(s)	184, 474
BspACI	CCGC	3 cut(s)	143, 224, 297
BspANI	GGCC	1 cut(s)	155
BspPI	GGATC	2 cut(s)	179, 469
BsrBI	CCGCTC	2 cut(s)	226, 297
BssMI	GATC	2 cut(s)	184, 474
BssNI	GRCGYC	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	2 cut(s)	151, 307
Bst6I	CTCTTC	1 cut(s)	17
BstACI	GRCGYC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	435
BstEII	GGTNACC	1 cut(s)	307
BstKTI	GATC	2 cut(s)	187, 477
BstMAI	GTCTC	2 cut(s)	2, 292
BstMBI	GATC	2 cut(s)	184, 474
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 136, 206
BstNI	CCWGG	1 cut(s)	47
BstPI	GGTNACC	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	334
BstV2I	GAAGAC	1 cut(s)	71
BstX2I	RGATCY	1 cut(s)	474
BstYI	RGATCY	1 cut(s)	474
BsuI	GTATCC	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	155
BtsI	GCAGTG	1 cut(s)	440
BtsIMutI	CAGTG	1 cut(s)	440
Cfr13I	GGNCC	1 cut(s)	76
CseI	GACGC	1 cut(s)	19
CsiI	ACCWGGT	1 cut(s)	45
CviJI	RGCY	7 cut(s)	96, 121, 130, 139, 155, 209, 519
CviKI_1	RGCY	7 cut(s)	96, 121, 130, 139, 155, 209, 519
DdeI	CTNAG	1 cut(s)	435
DpnI	GATC	2 cut(s)	186, 476
DpnII	GATC	2 cut(s)	184, 474
DrdI	GACNNNNNNGTC	1 cut(s)	16
DseDI	GACNNNNNNGTC	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	76
Eco91I	GGTNACC	1 cut(s)	307
EcoO65I	GGTNACC	1 cut(s)	307
EcoRI	GAATTC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	2
FaiI	YATR	3 cut(s)	545, 547, 577
Fnu4HI	GCNGC	1 cut(s)	348
Fsp4HI	GCNGC	1 cut(s)	348
GluI	GCNGC	1 cut(s)	348
HaeIII	GGCC	1 cut(s)	155
HgaI	GACGC	1 cut(s)	19
Hin1I	GRCGYC	1 cut(s)	11
HindIII	AAGCTT	1 cut(s)	94
HinfI	GANTC	1 cut(s)	27
HphI	GGTGA	7 cut(s)	64, 73, 301, 307, 324, 345, 478
Hpy188I	TCNGA	5 cut(s)	37, 115, 184, 279, 390
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	4 cut(s)	52, 186, 337, 493
HpyCH4III	ACNGT	2 cut(s)	151, 307
HpyCH4V	TGCA	3 cut(s)	172, 253, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 136, 206
HpyF3I	CTNAG	1 cut(s)	435
Hsp92I	GRCGYC	1 cut(s)	11
Kzo9I	GATC	2 cut(s)	184, 474
LpnPI	CCDG	7 cut(s)	32, 59, 107, 214, 239, 434, 485
Lsp1109I	GCAGC	1 cut(s)	334
MabI	ACCWGGT	1 cut(s)	45
MaeIII	GTNAC	3 cut(s)	307, 373, 438
MalI	GATC	2 cut(s)	186, 476
MbiI	CCGCTC	2 cut(s)	226, 297
MboI	GATC	2 cut(s)	184, 474
MboII	GAAGA	3 cut(s)	34, 67, 76
MfeI	CAATTG	1 cut(s)	534
MflI	RGATCY	1 cut(s)	474
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	3 cut(s)	257, 534, 555
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	413
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	1 cut(s)	515
Msp20I	TGGCCA	1 cut(s)	155
MspR9I	CCNGG	1 cut(s)	47
MunI	CAATTG	1 cut(s)	534
MvaI	CCWGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	3 cut(s)	127, 136, 206
NdeII	GATC	2 cut(s)	184, 474
NmuCI	GTSAC	3 cut(s)	307, 373, 438
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PflMI	CCANNNNNTGG	1 cut(s)	162
PkrI	GCNGC	1 cut(s)	349
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	45
PspEI	GGTNACC	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	474
SaqAI	TTAA	1 cut(s)	515
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	2 cut(s)	184, 474
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	1 cut(s)	47
SexAI	ACCWGGT	1 cut(s)	45
SinI	GGWCC	1 cut(s)	76
Sse9I	AATT	3 cut(s)	257, 534, 555
SsiI	CCGC	3 cut(s)	143, 224, 297
StyD4I	CCNGG	1 cut(s)	45
TaaI	ACNGT	2 cut(s)	151, 307
TaqI	TCGA	2 cut(s)	20, 228
TasI	AATT	3 cut(s)	257, 534, 555
Tru1I	TTAA	1 cut(s)	515
Tru9I	TTAA	1 cut(s)	515
TscAI	CASTG	1 cut(s)	447
TseFI	GTSAC	3 cut(s)	307, 373, 438
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	3 cut(s)	307, 373, 438
TspDTI	ATGAA	1 cut(s)	149
TspGWI	ACGGA	2 cut(s)	83, 235
TspRI	CASTG	1 cut(s)	447
Van91I	CCANNNNNTGG	1 cut(s)	162
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	2 cut(s)	257, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.