Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007079

Physical Location & Seq

Genomic Coordinates Reverse (-)

22921314 .. 22932752

Gene Structure 11439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48488

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGTCAATCAAGCTCCAACAAGCTCAGATATGGAGGAGAAGCCGTCGTCGAAGAGAGTCAAGTCAGAGGACGACCACGTGGCGAAGGAGGTGAAGACGGAGGAGGACCATTACGGTAGCAAAAGCTTGGATACTGCGAAAGCCGATAAGCTGGTGTGGCTGATGAAGCTACCGCAGACGGTGGCCAAGTCTTGGAACTCGCACCCTTCCTCCGATCCTCACCCCTTCGCCAAAGTAGCCCTCTCCCTTGATCCGCTCGAAACCGATAAGACCTCCTCTGTGCAGCTTTCAAACCTTTGCGCGGGTGACCATAACATTTTAAAGACATGGATGGAAATACAAATGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIIF_beta

Protein Analysis

116

Amino Acids

12.89

Weight (kDa)

5.67

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52270
rosa_chinensis	RchiOBHm_Chr1g0318621 RchiOBHm_Chr2g0111291 RchiOBHm_Chr6g0302021
rosa_laevigata	RLG00000011202 RLG00000017882
rosa_multiflora	Rmu_co8206050.1_g000001 Rmu_sc0005033.1_g000009 Rmu_sc0040640.1_g000001 Rmu_sc0040770.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166180
rosa_rugosa	Rorug05G0494200 Rorug05G0591000.1 Rorug06G0311100
rosa_samantha	Rh1AG035400 Rh1DG171200 Rh2CG228600 Rh2DG233100 Rh6AG423800 Rh6BG478500 Rh6CG436800 Rh6DG423900
rosa_wichuraiana	Rw2G009110 Rw2G017410 Rw6G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	192
AccBSI	CCGCTC	1 cut(s)	256
AccII	CGCG	1 cut(s)	302
AciI	CCGC	3 cut(s)	173, 254, 302
AclWI	GGATC	2 cut(s)	209, 245
AcoI	YGGCCR	1 cut(s)	183
AcvI	CACGTG	1 cut(s)	79
AfiI	CCNNNNNNNGG	2 cut(s)	192, 301
AgsI	TTSAA	1 cut(s)	291
AluBI	AGCT	6 cut(s)	14, 24, 126, 151, 169, 286
AluI	AGCT	6 cut(s)	14, 24, 126, 151, 169, 286
AlwI	GGATC	2 cut(s)	209, 245
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	1 cut(s)	283
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	3 cut(s)	103, 212, 317
AvaII	GGWCC	1 cut(s)	106
BalI	TGGCCA	1 cut(s)	185
BbrPI	CACGTG	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	1 cut(s)	325
BceAI	ACGGC	1 cut(s)	28
BciVI	GTATCC	1 cut(s)	124
BfuI	GTATCC	1 cut(s)	124
BisI	GCNGC	1 cut(s)	284
BlsI	GCNGC	1 cut(s)	285
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	101
BsaAI	YACGTR	1 cut(s)	79
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 194, 224
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 301
BseGI	GGATG	1 cut(s)	336
BseLI	CCNNNNNNNGG	2 cut(s)	192, 301
BseMII	CTCAG	1 cut(s)	39
BseRI	GAGGAG	3 cut(s)	50, 116, 265
BseXI	GCAGC	1 cut(s)	295
BsgI	GTGCAG	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	302
BshFI	GGCC	1 cut(s)	185
BslI	CCNNNNNNNGG	2 cut(s)	192, 301
BsnI	GGCC	1 cut(s)	185
Bsp143I	GATC	2 cut(s)	214, 250
BspACI	CCGC	3 cut(s)	173, 254, 302
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	1 cut(s)	38
BspFNI	CGCG	1 cut(s)	302
BspPI	GGATC	2 cut(s)	209, 245
BsrBI	CCGCTC	1 cut(s)	256
BssMI	GATC	2 cut(s)	214, 250
Bst4CI	ACNGT	2 cut(s)	116, 181
Bst6I	CTCTTC	1 cut(s)	47
BstBAI	YACGTR	1 cut(s)	79
BstDEI	CTNAG	1 cut(s)	25
BstEII	GGTNACC	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	336
BstFNI	CGCG	1 cut(s)	302
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	2 cut(s)	217, 253
BstMBI	GATC	2 cut(s)	214, 250
BstMWI	GCNNNNNNNGC	3 cut(s)	157, 166, 236
BstPI	GGTNACC	1 cut(s)	305
BstUI	CGCG	1 cut(s)	302
BstV1I	GCAGC	1 cut(s)	295
BstV2I	GAAGAC	1 cut(s)	101
BsuI	GTATCC	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	336
CfoI	GCGC	1 cut(s)	302
Cfr13I	GGNCC	1 cut(s)	106
CviAII	CATG	1 cut(s)	327
DdeI	CTNAG	1 cut(s)	25
DpnI	GATC	2 cut(s)	216, 252
DpnII	GATC	2 cut(s)	214, 250
DraI	TTTAAA	1 cut(s)	321
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	106
Eco72I	CACGTG	1 cut(s)	79
Eco91I	GGTNACC	1 cut(s)	305
EcoO65I	GGTNACC	1 cut(s)	305
FaeI	CATG	1 cut(s)	330
FaiI	YATR	3 cut(s)	32, 312, 328
FatI	CATG	1 cut(s)	326
FauI	CCCGC	1 cut(s)	295
Fnu4HI	GCNGC	1 cut(s)	284
FokI	GGATG	1 cut(s)	343
Fsp4HI	GCNGC	1 cut(s)	284
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	1 cut(s)	284
HaeIII	GGCC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	1 cut(s)	330
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HindIII	AAGCTT	1 cut(s)	124
HinfI	GANTC	1 cut(s)	57
HphI	GGTGA	3 cut(s)	103, 212, 317
Hpy188I	TCNGA	3 cut(s)	28, 67, 214
Hpy99I	CGWCG	2 cut(s)	49, 52
HpyAV	CCTTC	3 cut(s)	79, 216, 235
HpyCH4III	ACNGT	2 cut(s)	116, 181
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	1 cut(s)	283
HpyF10VI	GCNNNNNNNGC	3 cut(s)	157, 166, 236
HpyF3I	CTNAG	1 cut(s)	25
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	330
HspAI	GCGC	1 cut(s)	300
Kzo9I	GATC	2 cut(s)	214, 250
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	1 cut(s)	137
Lsp1109I	GCAGC	1 cut(s)	295
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	2 cut(s)	216, 252
MbiI	CCGCTC	1 cut(s)	256
MboI	GATC	2 cut(s)	214, 250
MboII	GAAGA	2 cut(s)	64, 106
MlsI	TGGCCA	1 cut(s)	185
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	66
MmeI	TCCRAC	1 cut(s)	41
Mox20I	TGGCCA	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	185
MseI	TTAA	1 cut(s)	320
Msp20I	TGGCCA	1 cut(s)	185
MvnI	CGCG	1 cut(s)	302
MwoI	GCNNNNNNNGC	3 cut(s)	157, 166, 236
NdeII	GATC	2 cut(s)	214, 250
NlaIII	CATG	1 cut(s)	330
NmuCI	GTSAC	1 cut(s)	305
PflMI	CCANNNNNTGG	1 cut(s)	192
PkrI	GCNGC	1 cut(s)	285
PleI	GAGTC	1 cut(s)	65
PmaCI	CACGTG	1 cut(s)	79
PmlI	CACGTG	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	65
Ppu21I	YACGTR	1 cut(s)	79
PspCI	CACGTG	1 cut(s)	79
PspEI	GGTNACC	1 cut(s)	305
PspPI	GGNCC	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	320
SatI	GCNGC	1 cut(s)	284
Sau3AI	GATC	2 cut(s)	214, 250
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	1 cut(s)	66
SinI	GGWCC	1 cut(s)	106
SsiI	CCGC	3 cut(s)	173, 254, 302
TaaI	ACNGT	2 cut(s)	116, 181
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	2 cut(s)	50, 258
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	1 cut(s)	179
TspGWI	ACGGA	1 cut(s)	113
Van91I	CCANNNNNTGG	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.